Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.07g205180 Amaranthus hybridus HOM05D004896 ORTHO05D060504 8.9e-102 373.6 191 100.0
Ah.12g059440 Amaranthus hybridus HOM05D004896 ORTHO05D006447 1.1e-24 117.5 154 50.0
arahy.Tifrunner.gnm1.ann1.10VWGS Arachis hypogaea HOM05D004896 ORTHO05D006447 3.8e-20 102.4 176 39.8
arahy.Tifrunner.gnm1.ann1.5ILH08 Arachis hypogaea HOM05D004896 ORTHO05D006447 3.8e-20 102.4 176 39.8
Cpa.g.sc130.54 Carica papaya HOM05D004896 ORTHO05D006447 3.8e-20 102.4 154 42.2
Psat3g168560 Pisum sativum HOM05D004896 ORTHO05D006447 3.8e-20 102.4 154 42.2
Lj7A604T65 Lonicera japonica HOM05D004896 ORTHO05D006447 1.9e-19 100.1 154 41.6
PGR142G1575 Punica granatum HOM05D004896 ORTHO05D006447 4.2e-19 99.0 176 38.1
Actinidia18427 Actinidia chinensis HOM05D004896 ORTHO05D006447 5.5e-19 98.6 154 41.6
AUR62030697 Chenopodium quinoa HOM05D004896 ORTHO05D006447 5.5e-19 98.6 154 39.6
EL10Ac9g21007 Beta vulgaris HOM05D004896 ORTHO05D006447 7.2e-19 98.2 154 41.6
Ca_03861_v3 Cicer arietinum L. HOM05D004896 ORTHO05D006447 7.2e-19 98.2 154 40.9
Sc03g0007130 Simmondsia chinensis HOM05D004896 ORTHO05D006447 7.2e-19 98.2 144 43.8
Ca_01399_v3 Cicer arietinum L. HOM05D004896 ORTHO05D006447 9.4e-19 97.8 154 40.9
Medtr0018s0290 Medicago truncatula HOM05D004896 ORTHO05D006447 9.4e-19 97.8 154 41.6
CAN.G473.48 Capsicum annuum HOM05D004896 ORTHO05D006447 1.2e-18 97.4 154 40.3
Cc07_g00300 Coffea canephora HOM05D004896 ORTHO05D006447 1.6e-18 97.1 154 40.9
GSVIVG01003974001 Vitis vinifera HOM05D004896 ORTHO05D006447 2.1e-18 96.7 176 37.5
Aqoxy1G02023 Aquilegia oxysepala HOM05D004896 ORTHO05D006447 2.7e-18 96.3 176 38.6
AUR62036338 Chenopodium quinoa HOM05D004896 ORTHO05D006447 2.7e-18 96.3 154 39.6
Lj1g0027814 Lotus japonicus HOM05D004896 ORTHO05D006447 2.7e-18 96.3 154 39.6
QL02p073334 Quercus lobata HOM05D004896 ORTHO05D006447 3.6e-18 95.9 154 38.3
Manes.15G155100 Manihot esculenta HOM05D004896 ORTHO05D006447 4.7e-18 95.5 154 38.3
TPR.G1112 Trifolium pratense HOM05D004896 ORTHO05D006447 6.1e-18 95.1 154 40.3
ClCG05G013000 Citrullus lanatus HOM05D004896 ORTHO05D006447 8.0e-18 94.7 154 37.7
SGA_v2.0_scaffold135G34930 Striga asiatica HOM05D004896 ORTHO05D006447 8.0e-18 94.7 154 39.0
Eucgr.I01701 Eucalyptus grandis HOM05D004896 ORTHO05D006447 1.0e-17 94.4 154 39.0
EL10Ac5g10496 Beta vulgaris HOM05D004896 ORTHO05D006447 1.4e-17 94.0 154 40.9
MD09G1019000 Malus domestica HOM05D004896 ORTHO05D006447 1.8e-17 93.6 154 39.0
vmacro18309 Vaccinium macrocarpon HOM05D004896 ORTHO05D006447 1.8e-17 93.6 154 38.3
Hma1.2p1_0383F.1_g140290 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 2.3e-17 93.2 154 39.0
Hma1.2p1_1407F.1_g281400 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 2.3e-17 93.2 154 39.0
Hma1.2p1_1484F.1_g286400 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 2.3e-17 93.2 154 39.0
Potri.001G338200 Populus trichocarpa HOM05D004896 ORTHO05D006447 2.3e-17 93.2 154 36.4
Sed0025595 Sechium edule HOM05D004896 ORTHO05D006447 2.3e-17 93.2 154 36.4
Cfa007299 Carpinus fangiana HOM05D004896 ORTHO05D006447 3.0e-17 92.8 154 37.7
Migut.H00045 Erythranthe guttata HOM05D004896 ORTHO05D006447 3.0e-17 92.8 154 39.0
Hund14985 Selenicereus undatus HOM05D004896 ORTHO05D006447 3.0e-17 92.8 71 64.8
Ciclev10015882m.g Citrus clementina HOM05D004896 ORTHO05D006447 4.0e-17 92.4 154 37.7
Atru.chr6.2473 Acer truncatum HOM05D004896 ORTHO05D006447 5.2e-17 92.0 142 40.1
Haze_14796 Corylus avellana HOM05D004896 ORTHO05D006447 5.2e-17 92.0 154 37.0
Dinv33394 Davidia involucrata HOM05D004896 ORTHO05D006447 5.2e-17 92.0 154 39.0
MBI19_g04325_MAGBIO Magnolia biondii HOM05D004896 ORTHO05D006447 5.2e-17 92.0 154 38.3
Peaxi162Scf00420g00251 Petunia axillaris HOM05D004896 ORTHO05D006447 5.2e-17 92.0 154 38.3
Rhsim08G0046600 Rhododendron simsii HOM05D004896 ORTHO05D006447 5.2e-17 92.0 154 38.3
unitig_0.g536 Utricularia gibba HOM05D004896 ORTHO05D006447 5.2e-17 92.0 154 38.3
CSS0017957 Camellia sinensis var. sinensis HOM05D004896 ORTHO05D006447 6.7e-17 91.7 154 39.6
FAN05G4015 Fragaria x ananassa HOM05D004896 ORTHO05D006447 6.7e-17 91.7 154 37.0
Nitab4.5_0002158g0160 Nicotiana tabacum HOM05D004896 ORTHO05D006447 6.7e-17 91.7 154 39.0
MELO3C014823.2 Cucumis melo HOM05D004896 ORTHO05D006447 8.8e-17 91.3 148 38.5
FAN14G4168 Fragaria x ananassa HOM05D004896 ORTHO05D006447 8.8e-17 91.3 154 37.0
Gohir.A05G342400 Gossypium hirsutum HOM05D004896 ORTHO05D006447 8.8e-17 91.3 154 38.3
Gorai.012G091200 Gossypium raimondii HOM05D004896 ORTHO05D006447 8.8e-17 91.3 154 38.3
Nn5g27187 Nelumbo nucifera HOM05D004896 ORTHO05D006447 8.8e-17 91.3 154 39.0
TWI56G0223 Tripterygium wilfordii HOM05D004896 ORTHO05D006447 8.8e-17 91.3 176 35.2
Glyma.16G066000 Glycine max HOM05D004896 ORTHO05D006447 1.2e-16 90.9 177 37.3
CiPaw.03G049000 Carya illinoinensis HOM05D004896 ORTHO05D006447 1.5e-16 90.5 154 37.0
Duzib264G0232 Durio zibethinus HOM05D004896 ORTHO05D006447 1.5e-16 90.5 154 39.0
EL10Ac5g11826 Beta vulgaris HOM05D004896 ORTHO05D006447 2.0e-16 90.1 97 51.5
CiPaw.04G032200 Carya illinoinensis HOM05D004896 ORTHO05D006447 2.0e-16 90.1 154 37.0
ECA246G3787 Erigeron canadensis HOM05D004896 ORTHO05D006447 2.0e-16 90.1 154 36.4
FAN09G1675 Fragaria x ananassa HOM05D004896 ORTHO05D006447 2.0e-16 90.1 154 36.4
Gohir.D04G080440 Gossypium hirsutum HOM05D004896 ORTHO05D006447 2.0e-16 90.1 154 37.7
RcHm_v2.0_Chr2g0173821 Rosa chinensis HOM05D004896 ORTHO05D006447 2.0e-16 90.1 154 36.4
CANSAT64G0177 Cannabis sativa HOM05D004896 ORTHO05D006447 2.6e-16 89.7 154 36.4
DCAR_021752 Daucus carota HOM05D004896 ORTHO05D006447 2.6e-16 89.7 154 38.3
FvH4_6g52290 Fragaria vesca HOM05D004896 ORTHO05D006447 2.6e-16 89.7 154 36.4
Solyc02g093690.3 Solanum lycopersicum HOM05D004896 ORTHO05D006447 2.6e-16 89.7 154 37.7
Sopen02g038330 Solanum pennellii HOM05D004896 ORTHO05D006447 2.6e-16 89.7 154 37.7
Thecc.04G026600 Theobroma cacao HOM05D004896 ORTHO05D006447 2.6e-16 89.7 154 38.3
CSS0036459 Camellia sinensis var. sinensis HOM05D004896 ORTHO05D006447 3.3e-16 89.4 142 41.5
FvH4_6g52310 Fragaria vesca HOM05D004896 ORTHO05D006447 3.3e-16 89.4 154 36.4
HanXRQChr17g0549471 Helianthus annuus HOM05D004896 ORTHO05D006447 5.7e-16 88.6 154 37.0
Phvul.008G145713 Phaseolus vulgaris HOM05D004896 ORTHO05D006447 7.5e-16 88.2 154 37.7
VMungo1080G0372 Vigna mungo HOM05D004896 ORTHO05D006447 7.5e-16 88.2 154 37.7
MSTRG.3120 Avicennia marina HOM05D004896 ORTHO05D006447 9.7e-16 87.8 154 37.7
Hma1.2p1_1484F.1_g286403 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 9.7e-16 87.8 73 60.3
Hma1.2p1_1484F.1_g286440 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 9.7e-16 87.8 73 60.3
FAN02G3298 Fragaria x ananassa HOM05D004896 ORTHO05D006447 1.3e-15 87.4 154 35.7
TAR629G1306 Trochodendron aralioides HOM05D004896 ORTHO05D006447 1.3e-15 87.4 154 37.7
Nitab4.5_0001031g0180 Nicotiana tabacum HOM05D004896 ORTHO05D006447 1.7e-15 87.0 71 62.0
PGSC0003DMG400012644 Solanum tuberosum HOM05D004896 ORTHO05D006447 2.8e-15 86.3 154 36.4
CDE07G0249 Ceratophyllum demersum HOM05D004896 ORTHO05D006447 3.7e-15 85.9 154 35.7
Lalb_Chr14g0362991 Lupinus albus HOM05D004896 ORTHO05D006447 3.7e-15 85.9 154 35.1
PSO675G8471 Papaver somniferum HOM05D004896 ORTHO05D006447 3.7e-15 85.9 176 34.1
THA.LOC104825307 Tarenaya hassleriana HOM05D004896 ORTHO05D006447 3.7e-15 85.9 154 37.0
Atru.chr3.2666 Acer truncatum HOM05D004896 ORTHO05D006447 4.8e-15 85.5 121 43.0
CsaV3_3G027540 Cucumis sativus L. HOM05D004896 ORTHO05D006447 4.8e-15 85.5 73 54.8
Duzib147G0160 Durio zibethinus HOM05D004896 ORTHO05D006447 4.8e-15 85.5 71 59.2
MD17G1019600 Malus domestica HOM05D004896 ORTHO05D006447 6.3e-15 85.1 73 57.5
Prupe.3G298100 Prunus persica HOM05D004896 ORTHO05D006447 6.3e-15 85.1 71 60.6
Zm00001eb329190 Zea mays HOM05D004896 ORTHO05D006447 1.1e-14 84.3 154 36.4
Glyma.19G080702 Glycine max HOM05D004896 ORTHO05D006447 1.8e-14 83.6 90 50.0
PSO541G0959 Papaver somniferum HOM05D004896 ORTHO05D006447 1.8e-14 83.6 176 33.5
RcHm_v2.0_Chr2g0174241 Rosa chinensis HOM05D004896 ORTHO05D006447 4.1e-14 82.4 72 54.2
BcaB06g27542 Brassica carinata HOM05D004896 ORTHO05D006447 5.3e-14 82.0 154 35.7
A04p13700 Brassica napus HOM05D004896 ORTHO05D006447 5.3e-14 82.0 154 35.7
C04p47490 Brassica napus HOM05D004896 ORTHO05D006447 5.3e-14 82.0 154 35.7
BolC4t26350H Brassica oleracea HOM05D004896 ORTHO05D006447 5.3e-14 82.0 154 35.7
BraA04t17030Z Brassica rapa HOM05D004896 ORTHO05D006447 5.3e-14 82.0 154 35.7
Carub.0007s3482 Capsella rubella HOM05D004896 ORTHO05D006447 5.3e-14 82.0 154 35.1
CARHR261290 Cardamine hirsuta HOM05D004896 ORTHO05D006447 5.3e-14 82.0 154 35.7
COL.COLO4_29242 Corchorus olitorius HOM05D004896 ORTHO05D006447 7.0e-14 81.6 154 35.7
MBI19_g02443_MAGBIO Magnolia biondii HOM05D004896 ORTHO05D006447 9.1e-14 81.3 69 59.4
Sabra16G0218900 Salix brachista HOM05D004896 ORTHO05D006447 9.1e-14 81.3 73 50.7
Lsat_1_v5_gn_0_30781 Lactuca sativa HOM05D004896 ORTHO05D006447 1.2e-13 80.9 154 34.4
HPP92_020467 Vanilla planifolia HOM05D004896 ORTHO05D006447 1.2e-13 80.9 154 37.0
HPP92_026167 Vanilla planifolia HOM05D004896 ORTHO05D006447 1.2e-13 80.9 154 37.0
Aa31LG9G960 Aethionema arabicum HOM05D004896 ORTHO05D006447 2.7e-13 79.7 154 34.4
ATR0099G063 Amborella trichopoda HOM05D004896 ORTHO05D006447 2.7e-13 79.7 154 33.8
AL7G49080 Arabidopsis lyrata HOM05D004896 ORTHO05D006447 3.5e-13 79.3 154 34.4
AT5G40660 Arabidopsis thaliana HOM05D004896 ORTHO05D006447 3.5e-13 79.3 154 34.4
Oeu064389.1 Olea europaea HOM05D004896 ORTHO05D006447 3.5e-13 79.3 73 54.8
Sed0012039 Sechium edule HOM05D004896 ORTHO05D006447 3.5e-13 79.3 73 49.3
Sp7g01200 Schrenkiella parvula HOM05D004896 ORTHO05D006447 4.5e-13 79.0 154 35.1
Thhalv10027828m.g Eutrema salsugineum HOM05D004896 ORTHO05D006447 7.7e-13 78.2 154 34.4
Os07g0644000 Oryza sativa ssp. japonica HOM05D004896 ORTHO05D006447 1.7e-12 77.0 154 33.8
SHI03827 Sapria himalayana HOM05D004896 ORTHO05D006447 3.8e-12 75.9 149 32.9
SGA_v2.0_scaffold18G08247 Striga asiatica HOM05D004896 ORTHO05D006447 6.5e-12 75.1 97 45.4
Cc06_g20980 Coffea canephora HOM05D004896 ORTHO05D006447 8.5e-12 74.7 133 39.8
SEGI_10618 Sequoiadendron giganteum HOM05D004896 ORTHO05D006447 1.2e-10 70.9 154 33.1
FAN14G0298 Fragaria x ananassa HOM05D004896 ORTHO05D006447 4.0e-09 65.9 158 32.9
Pp3c2_19250 Physcomitrium patens HOM05D004896 ORTHO05D006447 1.8e-06 57.0 69 44.9
SMO200G0187 Selaginella moellendorffii HOM05D004896 ORTHO05D006447 7.0e-06 55.1 75 40.0
AagrBONN_evm.TU.Sc2ySwM_362.2811 Anthoceros agrestis HOM05D004896 ORTHO05D006447 9.1e-06 54.7 97 35.1


User provided reference genes

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