Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.07g204850 Amaranthus hybridus HOM05D003640 ORTHO05D004439 0.0e+00 1445.6 842 100.0
EL10Ac3g05201 Beta vulgaris HOM05D003640 ORTHO05D004439 4.5e-299 1031.2 853 70.1
AUR62006022 Chenopodium quinoa HOM05D003640 ORTHO05D004439 7.0e-284 980.7 827 69.4
AUR62035604 Chenopodium quinoa HOM05D003640 ORTHO05D004439 1.3e-282 976.5 835 71.1
Hund09700 Selenicereus undatus HOM05D003640 ORTHO05D004439 2.8e-240 835.9 838 60.3
Hund21040 Selenicereus undatus HOM05D003640 ORTHO05D004439 4.5e-230 802.0 840 57.6
CSS0041088 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 2.6e-214 749.6 869 55.1
QL09p007408 Quercus lobata HOM05D003640 ORTHO05D004439 1.6e-211 740.3 872 54.8
Prupe.2G317300 Prunus persica HOM05D003640 ORTHO05D004439 3.3e-209 732.6 863 52.7
QL93p0214_0013 Quercus lobata HOM05D003640 ORTHO05D004439 1.3e-208 730.7 872 54.5
Dinv29226 Davidia involucrata HOM05D003640 ORTHO05D004439 5.9e-206 721.8 909 50.7
Rhsim03G0214000 Rhododendron simsii HOM05D003640 ORTHO05D004439 3.8e-205 719.2 873 53.3
Haze_00277 Corylus avellana HOM05D003640 ORTHO05D004439 3.2e-204 716.1 887 52.3
MD01G1227300 Malus domestica HOM05D003640 ORTHO05D004439 5.9e-198 695.3 859 52.2
Thecc.03G206700 Theobroma cacao HOM05D003640 ORTHO05D004439 8.5e-197 691.4 880 55.7
MD07G1297600 Malus domestica HOM05D003640 ORTHO05D004439 3.2e-196 689.5 860 53.4
Potri.012G023200 Populus trichocarpa HOM05D003640 ORTHO05D004439 4.2e-196 689.1 854 50.5
Atru.chr12.2367 Acer truncatum HOM05D003640 ORTHO05D004439 1.6e-195 687.2 869 50.2
Actinidia34257 Actinidia chinensis HOM05D003640 ORTHO05D004439 4.7e-195 685.6 880 50.3
GSVIVG01038625001 Vitis vinifera HOM05D003640 ORTHO05D004439 1.8e-194 683.7 805 54.3
Potri.015G006700 Populus trichocarpa HOM05D003640 ORTHO05D004439 2.3e-194 683.3 858 51.2
vmacro06427 Vaccinium macrocarpon HOM05D003640 ORTHO05D004439 5.1e-194 682.2 914 48.9
Actinidia28276 Actinidia chinensis HOM05D003640 ORTHO05D004439 1.4e-191 674.1 877 49.9
Manes.01G041300 Manihot esculenta HOM05D003640 ORTHO05D004439 4.1e-191 672.5 859 51.1
Duzib084G0116 Durio zibethinus HOM05D003640 ORTHO05D004439 7.2e-188 661.8 879 50.2
CiPaw.06G042300 Carya illinoinensis HOM05D003640 ORTHO05D004439 1.6e-187 660.6 884 49.8
FAN01G0295 Fragaria x ananassa HOM05D003640 ORTHO05D004439 1.0e-186 657.9 859 51.0
RcHm_v2.0_Chr1g0382521 Rosa chinensis HOM05D003640 ORTHO05D004439 2.3e-186 656.8 862 51.2
TWI39G1295 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 5.7e-185 652.1 884 50.5
Actinidia08687 Actinidia chinensis HOM05D003640 ORTHO05D004439 1.3e-181 641.0 805 52.5
TAR375G0550 Trochodendron aralioides HOM05D003640 ORTHO05D004439 2.2e-181 640.2 867 48.6
Cc02_g00960 Coffea canephora HOM05D003640 ORTHO05D004439 5.0e-181 639.0 883 50.3
FAN10G0822 Fragaria x ananassa HOM05D003640 ORTHO05D004439 1.1e-180 637.9 862 50.2
Sabra15G0004700 Salix brachista HOM05D003640 ORTHO05D004439 1.9e-180 637.1 866 49.2
CANSAT21G0645 Cannabis sativa HOM05D003640 ORTHO05D004439 2.5e-180 636.7 860 50.6
FAN10G2795 Fragaria x ananassa HOM05D003640 ORTHO05D004439 7.2e-180 635.2 862 50.2
ClCG01G000140 Citrullus lanatus HOM05D003640 ORTHO05D004439 7.5e-177 625.2 878 46.9
TAR629G0154 Trochodendron aralioides HOM05D003640 ORTHO05D004439 3.7e-176 622.9 880 47.5
MELO3C005925.2 Cucumis melo HOM05D003640 ORTHO05D004439 1.1e-175 621.3 872 46.4
Gorai.004G124100 Gossypium raimondii HOM05D003640 ORTHO05D004439 1.4e-175 620.9 880 51.4
Nn1g00405 Nelumbo nucifera HOM05D003640 ORTHO05D004439 3.1e-175 619.8 889 46.3
arahy.Tifrunner.gnm1.ann1.BT3HV7 Arachis hypogaea HOM05D003640 ORTHO05D004439 9.1e-175 618.2 846 49.3
Duzib068G1167 Durio zibethinus HOM05D003640 ORTHO05D004439 9.1e-175 618.2 882 49.8
CsaV3_5G000020 Cucumis sativus L. HOM05D003640 ORTHO05D004439 1.2e-174 617.8 872 47.0
Dinv35374 Davidia involucrata HOM05D003640 ORTHO05D004439 1.2e-174 617.8 763 53.1
Sed0000635 Sechium edule HOM05D003640 ORTHO05D004439 1.2e-174 617.8 867 46.5
arahy.Tifrunner.gnm1.ann1.1EDB5Y Arachis hypogaea HOM05D003640 ORTHO05D004439 5.9e-174 615.5 846 48.8
Sabra12G0010700 Salix brachista HOM05D003640 ORTHO05D004439 7.7e-174 615.1 937 44.5
Duzib205G1657 Durio zibethinus HOM05D003640 ORTHO05D004439 1.3e-173 614.4 883 50.5
Gohir.D08G115200 Gossypium hirsutum HOM05D003640 ORTHO05D004439 2.9e-173 613.2 880 51.2
FAN03G1455 Fragaria x ananassa HOM05D003640 ORTHO05D004439 9.4e-172 608.2 862 49.1
Ca_16756_v3 Cicer arietinum L. HOM05D003640 ORTHO05D004439 1.2e-171 607.8 844 49.5
Glyma.06G134300 Glycine max HOM05D003640 ORTHO05D004439 2.7e-171 606.7 839 47.2
Gohir.A08G103800 Gossypium hirsutum HOM05D003640 ORTHO05D004439 2.6e-169 600.1 881 50.7
FvH4_7g32660 Fragaria vesca HOM05D003640 ORTHO05D004439 4.4e-169 599.4 785 50.3
TAR636G3562 Trochodendron aralioides HOM05D003640 ORTHO05D004439 4.9e-168 595.9 873 47.2
Nn3g18833 Nelumbo nucifera HOM05D003640 ORTHO05D004439 6.3e-168 595.5 819 46.4
Lj1g0027227 Lotus japonicus HOM05D003640 ORTHO05D004439 1.1e-167 594.7 879 47.3
Sed0021595 Sechium edule HOM05D003640 ORTHO05D004439 4.1e-167 592.8 867 45.3
Lj1C1026T8 Lonicera japonica HOM05D003640 ORTHO05D004439 7.0e-167 592.0 862 48.4
Solyc03g082490.4 Solanum lycopersicum HOM05D003640 ORTHO05D004439 3.5e-166 589.7 871 47.0
VMungo1309G3003 Vigna mungo HOM05D003640 ORTHO05D004439 1.0e-165 588.2 859 47.6
Glyma.04G230800 Glycine max HOM05D003640 ORTHO05D004439 5.0e-165 585.9 864 48.0
Medtr3g092250 Medicago truncatula HOM05D003640 ORTHO05D004439 6.6e-165 585.5 847 47.9
Hma1.2p1_0094F.1_g047240 Hydrangea macrophylla HOM05D003640 ORTHO05D004439 1.5e-164 584.3 898 46.2
CiPaw.05G202900 Carya illinoinensis HOM05D003640 ORTHO05D004439 5.6e-164 582.4 764 50.1
Psat0s2807g0080 Pisum sativum HOM05D003640 ORTHO05D004439 9.5e-164 581.6 852 48.8
Nitab4.5_0001993g0040 Nicotiana tabacum HOM05D003640 ORTHO05D004439 1.2e-163 581.3 858 45.1
Lalb_Chr08g0239801 Lupinus albus HOM05D003640 ORTHO05D004439 8.0e-163 578.6 880 46.0
Gorai.008G265800 Gossypium raimondii HOM05D003640 ORTHO05D004439 1.4e-162 577.8 879 50.6
Lalb_Chr11g0067271 Lupinus albus HOM05D003640 ORTHO05D004439 2.3e-162 577.0 867 44.8
Oeu037965.1 Olea europaea HOM05D003640 ORTHO05D004439 5.2e-162 575.9 883 45.4
Phvul.009G050200 Phaseolus vulgaris HOM05D003640 ORTHO05D004439 6.8e-162 575.5 846 48.8
Gohir.D12G247700 Gossypium hirsutum HOM05D003640 ORTHO05D004439 8.9e-162 575.1 883 50.3
Gohir.D09G181300 Gossypium hirsutum HOM05D003640 ORTHO05D004439 7.5e-161 572.0 875 48.0
Gohir.A12G247000 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.1e-159 568.2 879 50.2
MBI12_g23004_MAGBIO Magnolia biondii HOM05D003640 ORTHO05D004439 1.7e-157 560.8 898 46.7
Oeu055180.3 Olea europaea HOM05D003640 ORTHO05D004439 2.3e-157 560.5 911 45.1
CSS0045837 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 1.1e-156 558.1 752 49.9
MSTRG.26989 Avicennia marina HOM05D003640 ORTHO05D004439 1.0e-154 551.6 868 47.0
Gorai.006G203300 Gossypium raimondii HOM05D003640 ORTHO05D004439 1.2e-153 548.1 875 48.1
PGR142G2086 Punica granatum HOM05D003640 ORTHO05D004439 2.0e-153 547.4 863 43.9
Sc19g0000670 Simmondsia chinensis HOM05D003640 ORTHO05D004439 1.3e-152 544.7 702 50.9
MSTRG.8618 Avicennia marina HOM05D003640 ORTHO05D004439 4.7e-147 526.2 892 45.1
Oeu061023.1 Olea europaea HOM05D003640 ORTHO05D004439 2.3e-146 523.9 787 46.4
Lalb_Chr23g0271841 Lupinus albus HOM05D003640 ORTHO05D004439 5.2e-146 522.7 818 45.0
Migut.F00997 Erythranthe guttata HOM05D003640 ORTHO05D004439 4.4e-145 519.6 858 44.4
DCAR_020359 Daucus carota HOM05D003640 ORTHO05D004439 2.2e-144 517.3 848 42.6
Aqoxy7G00014 Aquilegia oxysepala HOM05D003640 ORTHO05D004439 1.6e-142 511.1 876 41.1
SalBow6G0961 Salvia bowleyana HOM05D003640 ORTHO05D004439 4.3e-140 503.1 809 45.9
SGA_v2.0_scaffold565G52945 Striga asiatica HOM05D003640 ORTHO05D004439 3.6e-139 500.0 810 43.1
PSO135G0929 Papaver somniferum HOM05D003640 ORTHO05D004439 1.4e-135 488.0 862 43.0
COL.COLO4_14351 Corchorus olitorius HOM05D003640 ORTHO05D004439 6.0e-134 482.6 873 42.7
Sopen03g022220 Solanum pennellii HOM05D003640 ORTHO05D004439 2.5e-132 477.2 714 46.2
SGA_v2.0_scaffold136G35055 Striga asiatica HOM05D003640 ORTHO05D004439 3.3e-132 476.9 819 42.7
THA.LOC104825162 Tarenaya hassleriana HOM05D003640 ORTHO05D004439 4.7e-131 473.0 810 45.6
PSO384G0385 Papaver somniferum HOM05D003640 ORTHO05D004439 6.2e-131 472.6 868 42.1
Gohir.A09G186400 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.4e-130 471.5 870 41.0
SalBow2G2490 Salvia bowleyana HOM05D003640 ORTHO05D004439 4.0e-130 469.9 860 42.1
TWI23G0563 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 4.9e-128 463.0 665 48.0
DCAR_008967 Daucus carota HOM05D003640 ORTHO05D004439 3.0e-125 453.8 840 41.5
CAN.G358.147 Capsicum annuum HOM05D003640 ORTHO05D004439 1.9e-124 451.1 617 48.5
MSTRG.8540 Avicennia marina HOM05D003640 ORTHO05D004439 6.2e-123 446.0 836 41.7
ECA232G0587 Erigeron canadensis HOM05D003640 ORTHO05D004439 1.2e-121 441.8 813 40.7
unitig_92.g28243 Utricularia gibba HOM05D003640 ORTHO05D004439 1.5e-121 441.4 843 41.0
HanXRQChr05g0139301 Helianthus annuus HOM05D003640 ORTHO05D004439 8.4e-120 435.6 851 39.6
HanXRQChr15g0485391 Helianthus annuus HOM05D003640 ORTHO05D004439 7.1e-119 432.6 855 39.5
Cpa.g.sc3.144 Carica papaya HOM05D003640 ORTHO05D004439 9.3e-119 432.2 679 44.9
PSO063G3729 Papaver somniferum HOM05D003640 ORTHO05D004439 2.6e-113 414.1 838 41.2
ATR0580G072 Amborella trichopoda HOM05D003640 ORTHO05D004439 2.9e-112 410.6 902 38.0
HPP92_020943 Vanilla planifolia HOM05D003640 ORTHO05D008613 1.2e-110 405.2 858 39.2
Aa31sc289G20 Aethionema arabicum HOM05D003640 ORTHO05D004439 8.7e-109 399.1 744 41.9
Lsat_1_v5_gn_9_50221 Lactuca sativa HOM05D003640 ORTHO05D004439 9.6e-108 395.6 809 38.7
Lsat_1_v5_gn_9_50181 Lactuca sativa HOM05D003640 ORTHO05D004439 1.4e-106 391.7 810 39.0
Zm00001eb037420 Zea mays HOM05D003640 ORTHO05D004439 2.4e-106 391.0 855 36.7
Carub.0008s1397 Capsella rubella HOM05D003640 ORTHO05D004439 2.6e-105 387.5 754 42.0
Os08g0543600 Oryza sativa ssp. japonica HOM05D003640 ORTHO05D004439 3.8e-104 383.6 883 36.9
Zm00001eb198460 Zea mays HOM05D003640 ORTHO05D004439 6.0e-102 376.3 857 36.8
CARHR266770 Cardamine hirsuta HOM05D003640 ORTHO05D004439 6.7e-101 372.9 755 41.3
CARHR266800 Cardamine hirsuta HOM05D003640 ORTHO05D004439 9.6e-100 369.0 763 41.2
AL8G28460 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 8.5e-96 355.9 738 41.1
RcHm_v2.0_Chr1g0382561 Rosa chinensis HOM05D003640 ORTHO05D004439 1.9e-95 354.8 502 46.2
AT5G53620 Arabidopsis thaliana HOM05D003640 ORTHO05D004439 7.2e-95 352.8 741 40.5
Carub.0008s1383 Capsella rubella HOM05D003640 ORTHO05D004439 1.6e-94 351.7 739 41.8
Thhalv10012857m.g Eutrema salsugineum HOM05D003640 ORTHO05D004439 1.0e-93 349.0 794 39.2
CDE04G2417 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 2.2e-91 341.3 807 35.8
BolC3t14166H Brassica oleracea HOM05D003640 ORTHO05D004439 1.2e-81 308.9 728 38.5
BcaB01g04251 Brassica carinata HOM05D003640 ORTHO05D004439 2.6e-81 307.8 734 37.2
C03p17530 Brassica napus HOM05D003640 ORTHO05D004439 2.2e-80 304.7 725 37.9
Sp6g15750 Schrenkiella parvula HOM05D003640 ORTHO05D004439 1.4e-79 302.0 756 36.6
BraA03t10798Z Brassica rapa HOM05D003640 ORTHO05D004439 2.2e-75 288.1 730 37.3
A03p15040 Brassica napus HOM05D003640 ORTHO05D004439 2.8e-75 287.7 727 37.0
Sp6g15760 Schrenkiella parvula HOM05D003640 ORTHO05D004439 1.1e-74 285.8 750 37.5
BcaB05g22060 Brassica carinata HOM05D003640 ORTHO05D004439 5.2e-69 266.9 734 37.3
SHI02298 Sapria himalayana HOM05D003640 ORTHO05D004439 2.4e-66 258.1 411 44.8
unitig_37.g11993 Utricularia gibba HOM05D003640 ORTHO05D004439 1.8e-61 241.9 722 37.5
RcHm_v2.0_Chr1g0382611 Rosa chinensis HOM05D003640 ORTHO05D004439 1.1e-58 232.6 301 48.5
QL09p007399 Quercus lobata HOM05D003640 ORTHO05D004439 2.0e-57 228.4 318 48.1
QL93p0214_0021 Quercus lobata HOM05D003640 ORTHO05D004439 2.0e-57 228.4 318 48.1
Pp3c14_13150 Physcomitrium patens HOM05D003640 ORTHO05D004439 1.2e-52 212.6 869 30.5
Mapoly0021s0043 Marchantia polymorpha HOM05D003640 ORTHO05D004439 1.7e-51 208.8 975 29.0
RcHm_v2.0_Chr1g0382631 Rosa chinensis HOM05D003640 ORTHO05D004439 3.5e-49 201.1 367 40.3
BcaB01g04247 Brassica carinata HOM05D003640 ORTHO05D004439 6.1e-46 190.3 649 32.2
Pp3c17_17470 Physcomitrium patens HOM05D003640 ORTHO05D004439 5.4e-42 177.2 805 27.1
RcHm_v2.0_Chr1g0382641 Rosa chinensis HOM05D003640 ORTHO05D004439 1.8e-37 162.2 134 65.7
A03p14940 Brassica napus HOM05D003640 ORTHO05D004439 5.2e-37 160.6 122 69.7
BraA03t10789Z Brassica rapa HOM05D003640 ORTHO05D004439 5.2e-37 160.6 122 69.7
BcaC01g06262 Brassica carinata HOM05D003640 ORTHO05D004439 6.8e-37 160.2 719 27.8
arahy.Tifrunner.gnm1.ann1.3V8RAA Arachis hypogaea HOM05D003640 ORTHO05D004439 1.2e-36 159.5 422 34.1
PSO782G5739 Papaver somniferum HOM05D003640 ORTHO05D004439 6.4e-35 153.7 164 52.4
CDE07G0792 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 2.3e-29 135.2 691 27.9
CDE04G2700 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 3.5e-25 121.3 160 43.8
HanXRQChr03g0061701 Helianthus annuus HOM05D003640 ORTHO05D004439 9.5e-23 113.2 175 39.4
SEGI_36158 Sequoiadendron giganteum HOM05D003640 ORTHO05D004439 2.1e-22 112.1 338 32.5
Dinv06471 Davidia involucrata HOM05D003640 ORTHO05D004439 2.0e-20 105.5 120 50.8
Dinv35373 Davidia involucrata HOM05D003640 ORTHO05D004439 9.9e-20 103.2 98 64.3
Potri.016G069900 Populus trichocarpa HOM05D003640 ORTHO05D034990 2.4e-18 98.6 77 66.2
C09p43570 Brassica napus HOM05D003640 ORTHO05D004439 1.1e-15 89.7 213 32.4
COL.COLO4_06022 Corchorus olitorius HOM05D003057 ORTHO05D003904 1.1e-15 89.7 141 46.1
PSO017G5262 Papaver somniferum HOM05D003640 ORTHO05D004439 8.1e-14 83.6 153 40.5
HanXRQChr06g0170111 Helianthus annuus HOM05D003640 ORTHO05D004439 1.1e-13 83.2 119 40.3
HanXRQChr15g0479781 Helianthus annuus HOM05D003640 ORTHO05D004439 1.4e-13 82.8 130 38.5
PSO170G6851 Papaver somniferum HOM05D003640 ORTHO05D004439 9.0e-13 80.1 153 40.5
C09p43560 Brassica napus HOM05D003640 ORTHO05D004439 2.6e-12 78.6 101 48.5
BolC9t57239H Brassica oleracea HOM05D003640 ORTHO05D004439 2.6e-12 78.6 101 48.5
CAN.G1387.1 Capsicum annuum HOM05D003640 ORTHO05D004439 3.4e-12 78.2 210 33.3
PGR042G3558 Punica granatum HOM05D000045 ORTHO05D000611 2.2e-11 75.5 137 42.3
COL.COLO4_24960 Corchorus olitorius HOM05D003640 ORTHO05D004439 3.2e-10 71.6 100 47.0


User provided reference genes

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