Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.07g203740 Amaranthus hybridus HOM05D005841 ORTHO05D007132 4.1e-201 704.5 358 100.0
EL10Ac9g20941 Beta vulgaris HOM05D005841 ORTHO05D007132 1.9e-158 562.8 342 83.3
AUR62041651 Chenopodium quinoa HOM05D005841 ORTHO05D007132 3.8e-154 548.5 342 81.9
AUR62035532 Chenopodium quinoa HOM05D005841 ORTHO05D007132 9.0e-148 527.3 342 79.5
Hund07799 Selenicereus undatus HOM05D005841 ORTHO05D007132 1.6e-144 516.5 342 76.9
Sc20g0000960 Simmondsia chinensis HOM05D005841 ORTHO05D007132 2.2e-138 496.1 341 73.6
CSS0015441 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 9.7e-134 480.7 351 70.7
Medtr3g011510 Medicago truncatula HOM05D005841 ORTHO05D007132 1.3e-133 480.3 352 69.0
Rhsim03G0005600 Rhododendron simsii HOM05D005841 ORTHO05D007132 4.1e-132 475.3 351 69.5
Ca_26913_v3 Cicer arietinum L. HOM05D005841 ORTHO05D007132 9.1e-132 474.2 342 70.2
Atru.chr12.1096 Acer truncatum HOM05D005841 ORTHO05D007132 1.5e-131 473.4 346 68.8
Glyma.04G125600 Glycine max HOM05D005841 ORTHO05D007132 1.0e-130 470.7 342 71.1
vmacro07900 Vaccinium macrocarpon HOM05D005841 ORTHO05D007132 1.3e-130 470.3 351 67.8
Lalb_Chr18g0048171 Lupinus albus HOM05D005841 ORTHO05D007132 2.2e-130 469.5 341 70.4
VMungo1080G1721 Vigna mungo HOM05D005841 ORTHO05D007132 3.8e-130 468.8 351 70.1
Lj3g0005753 Lotus japonicus HOM05D005841 ORTHO05D007132 5.0e-130 468.4 351 68.9
QL04p022932 Quercus lobata HOM05D005841 ORTHO05D007132 8.5e-130 467.6 393 63.6
Sabra03G0139600 Salix brachista HOM05D005841 ORTHO05D007132 1.4e-129 466.8 354 67.8
Potri.003G189400 Populus trichocarpa HOM05D005841 ORTHO05D007132 1.9e-129 466.5 354 68.9
Phvul.005G012800 Phaseolus vulgaris HOM05D005841 ORTHO05D007132 9.4e-129 464.2 342 69.3
TPR.G5121 Trifolium pratense HOM05D005841 ORTHO05D007132 3.6e-128 462.2 388 62.4
Dinv24065 Davidia involucrata HOM05D005841 ORTHO05D007132 6.1e-128 461.5 352 67.3
Glyma.06G313000 Glycine max HOM05D005841 ORTHO05D007132 7.9e-128 461.1 342 69.9
Sabra01G0025200 Salix brachista HOM05D005841 ORTHO05D007132 7.9e-128 461.1 354 68.1
THA.LOC104809184 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 1.0e-127 460.7 351 66.4
Dinv14310 Davidia involucrata HOM05D005841 ORTHO05D007132 1.8e-127 459.9 351 68.1
Manes.04G153300 Manihot esculenta HOM05D005841 ORTHO05D007132 1.8e-127 459.9 363 66.4
Potri.001G036400 Populus trichocarpa HOM05D005841 ORTHO05D007132 2.3e-127 459.5 354 67.8
THA.LOC104824200 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 3.9e-127 458.8 344 68.3
Actinidia22040 Actinidia chinensis HOM05D005841 ORTHO05D007132 6.7e-127 458.0 336 70.8
CiPaw.14G011500 Carya illinoinensis HOM05D005841 ORTHO05D007132 8.8e-127 457.6 405 61.7
Thecc.10G128400 Theobroma cacao HOM05D005841 ORTHO05D007132 1.5e-126 456.8 345 66.7
COL.COLO4_09288 Corchorus olitorius HOM05D005841 ORTHO05D007132 2.8e-125 452.6 354 65.3
Gohir.A06G171000 Gossypium hirsutum HOM05D005841 ORTHO05D007132 2.8e-125 452.6 352 66.2
PSO339G0077 Papaver somniferum HOM05D005841 ORTHO05D007132 2.8e-125 452.6 342 66.4
PSO384G2928 Papaver somniferum HOM05D005841 ORTHO05D007132 3.7e-125 452.2 342 66.7
Gorai.010G208800 Gossypium raimondii HOM05D005841 ORTHO05D007132 4.8e-125 451.8 352 65.9
Gohir.D06G178900 Gossypium hirsutum HOM05D005841 ORTHO05D007132 6.3e-125 451.4 352 65.9
Duzib128G0994 Durio zibethinus HOM05D005841 ORTHO05D007132 8.2e-125 451.1 352 65.6
Oeu007758.1 Olea europaea HOM05D005841 ORTHO05D007132 1.1e-124 450.7 341 65.7
MSTRG.19910 Avicennia marina HOM05D005841 ORTHO05D007132 4.1e-124 448.7 351 65.5
Ciclev10001427m.g Citrus clementina HOM05D005841 ORTHO05D007132 2.6e-123 446.0 379 63.3
MSTRG.26082 Avicennia marina HOM05D005841 ORTHO05D007132 3.4e-123 445.7 365 63.8
Lju124A25T34 Lonicera japonica HOM05D005841 ORTHO05D007132 7.7e-123 444.5 344 66.9
arahy.Tifrunner.gnm1.ann1.AX9XXP Arachis hypogaea HOM05D005841 ORTHO05D007132 2.2e-122 443.0 354 65.8
Aa31sc488G20 Aethionema arabicum HOM05D005841 ORTHO05D007132 4.2e-121 438.7 351 64.1
DCAR_019783 Daucus carota HOM05D005841 ORTHO05D007132 5.5e-121 438.3 350 65.1
Cc06_g15810 Coffea canephora HOM05D005841 ORTHO05D007132 9.4e-121 437.6 362 63.3
Psat5g225080 Pisum sativum HOM05D005841 ORTHO05D007132 4.7e-120 435.3 309 70.2
TWI38G1535 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 8.0e-120 434.5 352 63.1
Lsat_1_v5_gn_5_163601 Lactuca sativa HOM05D005841 ORTHO05D007132 1.4e-119 433.7 391 59.8
Haze_02951 Corylus avellana HOM05D005841 ORTHO05D007132 6.7e-119 431.4 448 54.2
unitig_699.g19444 Utricularia gibba HOM05D005841 ORTHO05D007132 2.0e-118 429.9 352 60.8
ECA248G0891 Erigeron canadensis HOM05D005841 ORTHO05D007132 2.6e-118 429.5 406 58.1
Nitab4.5_0000324g0020 Nicotiana tabacum HOM05D005841 ORTHO05D007132 4.4e-118 428.7 398 57.3
Peaxi162Scf00258g00731 Petunia axillaris HOM05D005841 ORTHO05D007132 5.7e-118 428.3 397 57.4
TWI15G0221 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 3.7e-117 425.6 352 62.5
BolC8t50563H Brassica oleracea HOM05D005841 ORTHO05D007132 8.2e-117 424.5 396 57.3
CANSAT56G0667 Cannabis sativa HOM05D005841 ORTHO05D007132 1.1e-116 424.1 364 61.5
AL5G35420 Arabidopsis lyrata HOM05D005841 ORTHO05D007132 1.4e-116 423.7 399 57.6
HanXRQChr13g0390471 Helianthus annuus HOM05D005841 ORTHO05D007132 1.4e-116 423.7 316 68.7
C08p29570 Brassica napus HOM05D005841 ORTHO05D007132 2.4e-116 422.9 395 57.0
CsaV3_5G029280 Cucumis sativus L. HOM05D005841 ORTHO05D007132 2.4e-116 422.9 382 59.2
MELO3C011778.2 Cucumis melo HOM05D005841 ORTHO05D007132 3.1e-116 422.5 382 59.2
AT3G54360 Arabidopsis thaliana HOM05D005841 ORTHO05D007132 5.3e-116 421.8 391 58.3
Nitab4.5_0004458g0010 Nicotiana tabacum HOM05D005841 ORTHO05D007132 7.0e-116 421.4 398 56.5
A09p47340 Brassica napus HOM05D005841 ORTHO05D007132 9.1e-116 421.0 395 57.0
CARHR164270 Cardamine hirsuta HOM05D005841 ORTHO05D007132 1.6e-115 420.2 393 57.8
A07p22080 Brassica napus HOM05D005841 ORTHO05D007132 2.6e-115 419.5 386 57.5
BraA07t29891Z Brassica rapa HOM05D005841 ORTHO05D007132 2.6e-115 419.5 386 57.5
BraA09t40195Z Brassica rapa HOM05D005841 ORTHO05D007132 3.5e-115 419.1 396 56.3
Thhalv10010421m.g Eutrema salsugineum HOM05D005841 ORTHO05D007132 4.5e-115 418.7 391 57.8
BcaB01g00199 Brassica carinata HOM05D005841 ORTHO05D007132 5.9e-115 418.3 369 60.4
Eucgr.G03178 Eucalyptus grandis HOM05D005841 ORTHO05D007132 2.9e-114 416.0 389 58.6
Aqoxy3G04362 Aquilegia oxysepala HOM05D005841 ORTHO05D007132 5.0e-114 415.2 342 62.9
Zm00001eb126920 Zea mays HOM05D005841 ORTHO05D007132 5.0e-114 415.2 330 64.5
BcaB02g07739 Brassica carinata HOM05D005841 ORTHO05D007132 1.5e-113 413.7 328 64.6
Carub.0005s2096 Capsella rubella HOM05D005841 ORTHO05D007132 1.5e-113 413.7 399 56.1
Sp5g08040 Schrenkiella parvula HOM05D005841 ORTHO05D007132 2.5e-113 412.9 401 55.6
Sed0011967 Sechium edule HOM05D005841 ORTHO05D007132 4.2e-113 412.1 395 56.5
Sed0002293 Sechium edule HOM05D005841 ORTHO05D007132 1.6e-112 410.2 365 59.5
arahy.Tifrunner.gnm1.ann1.87YK44 Arachis hypogaea HOM05D005841 ORTHO05D007132 2.1e-112 409.8 358 62.0
Os01g0104100 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 2.1e-112 409.8 357 60.5
GSVIVG01027370001 Vitis vinifera HOM05D005841 ORTHO05D007132 1.4e-111 407.1 352 61.4
MBI19_g24060_MAGBIO Magnolia biondii HOM05D005841 ORTHO05D007132 3.0e-111 406.0 401 57.1
CDE02G3427 Ceratophyllum demersum HOM05D005841 ORTHO05D007132 5.7e-110 401.7 341 59.2
PGSC0003DMG400023670 Solanum tuberosum HOM05D005841 ORTHO05D007132 3.7e-109 399.1 413 52.8
Sopen10g031070 Solanum pennellii HOM05D005841 ORTHO05D007132 6.3e-109 398.3 429 51.3
Nn2g15922 Nelumbo nucifera HOM05D005841 ORTHO05D007132 9.1e-108 394.4 351 61.3
SEGI_15550 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 4.5e-107 392.1 359 57.9
ClCG11G012870 Citrullus lanatus HOM05D005841 ORTHO05D007132 2.2e-106 389.8 355 59.4
Solyc10g080520.3 Solanum lycopersicum HOM05D005841 ORTHO05D007132 8.5e-106 387.9 364 56.3
SGA_v2.0_scaffold69G23059 Striga asiatica HOM05D005841 ORTHO05D007132 4.2e-105 385.6 342 58.8
MD07G1085200 Malus domestica HOM05D005841 ORTHO05D007132 5.7e-102 375.2 350 58.0
Migut.J01841 Erythranthe guttata HOM05D005841 ORTHO05D007132 4.1e-100 369.0 348 55.5
BcaC08g44679 Brassica carinata HOM05D005841 ORTHO05D007132 7.0e-100 368.2 346 56.9
RcHm_v2.0_Chr1g0330051 Rosa chinensis HOM05D005841 ORTHO05D007132 1.2e-99 367.5 355 57.5
Prupe.2G051700 Prunus persica HOM05D005841 ORTHO05D007132 8.6e-98 361.3 360 56.4
FAN06G4202 Fragaria x ananassa HOM05D005841 ORTHO05D007132 1.5e-97 360.5 339 57.5
FvH4_7g04620 Fragaria vesca HOM05D005841 ORTHO05D007132 1.9e-97 360.1 348 56.9
FAN06G1077 Fragaria x ananassa HOM05D005841 ORTHO05D007132 1.9e-97 360.1 339 57.2
FAN03G2595 Fragaria x ananassa HOM05D005841 ORTHO05D007132 2.5e-97 359.8 339 57.2
FAN10G3225 Fragaria x ananassa HOM05D005841 ORTHO05D007132 3.3e-97 359.4 339 57.2
FAN01G0675 Fragaria x ananassa HOM05D005841 ORTHO05D007132 4.2e-97 359.0 339 57.2
Ah.15g098060 Amaranthus hybridus HOM05D005841 ORTHO05D007132 2.3e-95 353.2 234 77.4
C06p22120 Brassica napus HOM05D005841 ORTHO05D007132 5.2e-95 352.1 275 65.1
BolC6t37399H Brassica oleracea HOM05D005841 ORTHO05D007132 5.2e-95 352.1 275 65.1
Mapoly0042s0033 Marchantia polymorpha HOM05D005841 ORTHO05D007132 6.8e-95 351.7 329 56.2
Os02g0795300 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 6.8e-95 351.7 359 56.3
Pp3c4_17260 Physcomitrium patens HOM05D005841 ORTHO05D007132 3.5e-91 339.3 281 59.8
AUR62041645 Chenopodium quinoa HOM05D005841 ORTHO05D007132 7.8e-91 338.2 217 80.2
AUR62039567 Chenopodium quinoa HOM05D005841 ORTHO05D007132 1.9e-89 333.6 353 55.8
AagrBONN_evm.TU.Sc2ySwM_344.2135 Anthoceros agrestis HOM05D005841 ORTHO05D007132 2.5e-89 333.2 386 49.2
Gorai.011G224300 Gossypium raimondii HOM05D005841 ORTHO05D007132 2.2e-85 320.1 270 60.7
SMO194G0025 Selaginella moellendorffii HOM05D005841 ORTHO05D007132 3.9e-82 309.3 282 53.9
CSS0023245 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 6.6e-82 308.5 213 72.8
ATR0068G039 Amborella trichopoda HOM05D005841 ORTHO05D007132 1.3e-69 267.7 216 61.1
CBR_g19049 Chara braunii HOM05D005841 ORTHO05D007132 1.7e-58 230.7 378 39.2
HPP92_001714 Vanilla planifolia HOM05D005841 ORTHO05D007132 9.9e-54 214.9 281 44.8
Gohir.D10G200101 Gossypium hirsutum HOM05D005841 ORTHO05D007132 2.5e-49 200.3 150 64.7
SEGI_12352 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 8.1e-40 168.7 121 66.9
Cpa.g.sc33.143 Carica papaya HOM05D005841 ORTHO05D007132 1.4e-39 167.9 146 61.6
FAN03G2434 Fragaria x ananassa HOM05D005841 ORTHO05D007132 9.9e-38 161.8 128 64.8
Gohir.D10G200050 Gossypium hirsutum HOM05D005841 ORTHO05D007132 2.1e-35 154.1 115 67.0
TAR629G2175 Trochodendron aralioides HOM05D005841 ORTHO05D007132 2.3e-34 150.6 124 62.9
Hma1.2p1_3953F.1_g338070 Hydrangea macrophylla HOM05D005841 ORTHO05D007132 3.0e-34 150.2 137 58.4
Hma1.2p1_3953F.1_g338060 Hydrangea macrophylla HOM05D005841 ORTHO05D007132 1.3e-24 118.2 79 72.2
Lsat_1_v5_gn_1_17940 Lactuca sativa HOM05D005841 ORTHO05D007132 1.8e-18 97.8 73 67.1
Cre03.g172600 Chlamydomonas reinhardtii HOM05D005841 ORTHO05D007132 1.0e-13 82.0 349 23.8
SEGI_26376 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 6.5e-13 79.3 118 42.4
Psat0s5799g0040 Pisum sativum HOM05D005841 ORTHO05D007132 1.5e-09 68.2 72 52.8
ATR0068G030 Amborella trichopoda HOM05D005841 ORTHO05D007132 8.2e-08 62.4 58 60.3
TPR.G5122 Trifolium pratense HOM05D003377 ORTHO05D004080 2.6e-06 57.4 59 52.5


User provided reference genes

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