Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.07g203280 Amaranthus hybridus HOM05D003958 ORTHO05D004864 5.2e-162 574.3 290 100.0
EL10Ac9g21169 Beta vulgaris HOM05D003958 ORTHO05D004864 3.8e-72 275.8 166 81.3
AUR62002487 Chenopodium quinoa HOM05D003958 ORTHO05D004864 2.1e-70 270.0 167 80.8
Hund02774 Selenicereus undatus HOM05D003958 ORTHO05D004864 5.7e-68 261.9 166 78.3
AUR62023705 Chenopodium quinoa HOM05D003958 ORTHO05D004864 1.9e-63 246.9 153 79.7
Manes.17G113700 Manihot esculenta HOM05D003958 ORTHO05D004864 4.2e-63 245.7 162 72.8
Peaxi162Scf00129g01325 Petunia axillaris HOM05D003958 ORTHO05D004864 2.8e-62 243.0 165 72.1
CAN.G206.10 Capsicum annuum HOM05D003958 ORTHO05D004864 1.0e-61 241.1 165 72.7
PGSC0003DMG400000483 Solanum tuberosum HOM05D003958 ORTHO05D004864 1.0e-61 241.1 165 72.7
Sc03g0007660 Simmondsia chinensis HOM05D003958 ORTHO05D004864 1.4e-61 240.7 163 73.0
COL.COLO4_29053 Corchorus olitorius HOM05D003958 ORTHO05D004864 5.2e-61 238.8 164 72.0
Thecc.04G013700 Theobroma cacao HOM05D003958 ORTHO05D004864 8.8e-61 238.0 162 71.6
Sopen02g031390 Solanum pennellii HOM05D003958 ORTHO05D004864 1.2e-60 237.7 165 71.5
Nitab4.5_0002739g0040 Nicotiana tabacum HOM05D003958 ORTHO05D004864 1.5e-60 237.3 165 70.9
Duzib147G0735 Durio zibethinus HOM05D003958 ORTHO05D004864 3.4e-60 236.1 162 71.0
Nitab4.5_0008215g0010 Nicotiana tabacum HOM05D003958 ORTHO05D004864 4.4e-60 235.7 164 70.7
Duzib147G0566 Durio zibethinus HOM05D003958 ORTHO05D004864 5.7e-60 235.3 162 70.4
ClCG01G008920 Citrullus lanatus HOM05D003958 ORTHO05D004864 7.5e-60 235.0 164 71.3
MELO3C021808.2 Cucumis melo HOM05D003958 ORTHO05D004864 1.7e-59 233.8 164 72.0
Aqoxy2G00425 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 2.2e-59 233.4 164 70.1
Nn7g37719 Nelumbo nucifera HOM05D003958 ORTHO05D004864 2.8e-59 233.0 163 72.4
MD09G1029500 Malus domestica HOM05D003958 ORTHO05D004864 3.7e-59 232.6 165 69.1
CsaV3_1G037790 Cucumis sativus L. HOM05D003958 ORTHO05D004864 4.9e-59 232.3 164 70.7
FvH4_6g51011 Fragaria vesca HOM05D003958 ORTHO05D004864 4.9e-59 232.3 165 70.9
TWI12G0059 Tripterygium wilfordii HOM05D003958 ORTHO05D004864 4.9e-59 232.3 163 71.2
Aqoxy3G00906 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 6.3e-59 231.9 165 69.1
TAR622G1043 Trochodendron aralioides HOM05D003958 ORTHO05D004864 6.3e-59 231.9 163 72.4
PGR054G0003 Punica granatum HOM05D003958 ORTHO05D004864 1.1e-58 231.1 161 69.6
PGR119G1149 Punica granatum HOM05D003958 ORTHO05D004864 1.1e-58 231.1 161 69.6
CANSAT64G0951 Cannabis sativa HOM05D003958 ORTHO05D004864 1.4e-58 230.7 169 67.5
Haze_14701 Corylus avellana HOM05D003958 ORTHO05D004864 1.8e-58 230.3 166 71.1
Prupe.3G287900 Prunus persica HOM05D003958 ORTHO05D004864 1.8e-58 230.3 165 69.7
Sabra18G0098500 Salix brachista HOM05D003958 ORTHO05D004864 2.4e-58 229.9 164 67.1
vmacro18265 Vaccinium macrocarpon HOM05D003958 ORTHO05D004864 2.4e-58 229.9 164 70.7
Ciclev10016011m.g Citrus clementina HOM05D003958 ORTHO05D004864 3.1e-58 229.6 165 69.1
Sed0009763 Sechium edule HOM05D003958 ORTHO05D004864 3.1e-58 229.6 164 69.5
CSS0020788 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 5.4e-58 228.8 165 69.1
CSS0020854 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 5.4e-58 228.8 165 69.1
DCAR_009028 Daucus carota HOM05D003958 ORTHO05D004864 7.0e-58 228.4 165 68.5
PSO832G3613 Papaver somniferum HOM05D003958 ORTHO05D004864 7.0e-58 228.4 162 71.6
Lalb_Chr03g0031671 Lupinus albus HOM05D003958 ORTHO05D004864 9.2e-58 228.0 163 69.3
RcHm_v2.0_Chr2g0172551 Rosa chinensis HOM05D003958 ORTHO05D004864 9.2e-58 228.0 165 68.5
Phvul.011G172200 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 1.6e-57 227.3 161 70.8
QL02p075632 Quercus lobata HOM05D003958 ORTHO05D004864 1.6e-57 227.3 164 67.7
PSO063G1059 Papaver somniferum HOM05D003958 ORTHO05D004864 2.7e-57 226.5 162 71.0
Atru.chr6.2341 Acer truncatum HOM05D003958 ORTHO05D004864 3.5e-57 226.1 168 67.9
Sabra18G0098900 Salix brachista HOM05D003958 ORTHO05D004864 3.5e-57 226.1 165 66.1
CiPaw.03G040700 Carya illinoinensis HOM05D003958 ORTHO05D004864 4.5e-57 225.7 165 69.1
CDE06G0036 Ceratophyllum demersum HOM05D003958 ORTHO05D004864 4.5e-57 225.7 161 67.1
Gorai.006G031600 Gossypium raimondii HOM05D003958 ORTHO05D004864 4.5e-57 225.7 164 68.3
Potri.018G120500 Populus trichocarpa HOM05D003958 ORTHO05D004864 4.5e-57 225.7 165 67.3
Sabra18G0100500 Salix brachista HOM05D003958 ORTHO05D004864 4.5e-57 225.7 165 66.1
Sabra18G0099100 Salix brachista HOM05D003958 ORTHO05D004864 5.9e-57 225.3 165 66.7
Sabra18G0101000 Salix brachista HOM05D003958 ORTHO05D004864 7.8e-57 224.9 165 66.1
Gohir.A09G027800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.0e-56 224.6 164 68.3
Gohir.D09G027100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.3e-56 224.2 164 68.3
Hma1.2p1_0858F.1_g229230 Hydrangea macrophylla HOM05D003958 ORTHO05D004864 1.3e-56 224.2 160 71.2
Duzib147G0897 Durio zibethinus HOM05D003958 ORTHO05D004864 1.7e-56 223.8 162 69.1
Eucgr.I01766 Eucalyptus grandis HOM05D003958 ORTHO05D004864 1.7e-56 223.8 163 66.3
Lj3g0001252 Lotus japonicus HOM05D003958 ORTHO05D004864 1.7e-56 223.8 163 68.7
Psat1g092800 Pisum sativum HOM05D003958 ORTHO05D004864 2.3e-56 223.4 164 68.9
Cc02_g12190 Coffea canephora HOM05D003958 ORTHO05D004864 3.8e-56 222.6 163 71.2
Eucgr.L02705 Eucalyptus grandis HOM05D003958 ORTHO05D004864 3.8e-56 222.6 161 67.1
Lj7A595G65 Lonicera japonica HOM05D003958 ORTHO05D004864 3.8e-56 222.6 164 68.3
arahy.Tifrunner.gnm1.ann1.CB8F3G Arachis hypogaea HOM05D003958 ORTHO05D004864 5.0e-56 222.2 162 67.9
CiPaw.04G026700 Carya illinoinensis HOM05D003958 ORTHO05D004864 5.0e-56 222.2 165 68.5
arahy.Tifrunner.gnm1.ann1.38SPRB Arachis hypogaea HOM05D003958 ORTHO05D004864 6.6e-56 221.9 162 67.9
ECA232G3491 Erigeron canadensis HOM05D003958 ORTHO05D004864 1.1e-55 221.1 166 68.1
Lj2g0025561 Lotus japonicus HOM05D003958 ORTHO05D004864 1.9e-55 220.3 163 68.7
CARHR198720 Cardamine hirsuta HOM05D003958 ORTHO05D004864 5.6e-55 218.8 172 65.7
MBI05_g22036_MAGBIO Magnolia biondii HOM05D003958 ORTHO05D004864 5.6e-55 218.8 162 66.0
Lju41A38T12 Lonicera japonica HOM05D003958 ORTHO05D004864 9.5e-55 218.0 165 69.1
arahy.Tifrunner.gnm1.ann1.8Z0BSJ Arachis hypogaea HOM05D003958 ORTHO05D004864 1.2e-54 217.6 159 68.6
Ca_00876_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 1.2e-54 217.6 159 68.6
Gohir.D13G007800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.6e-54 217.2 158 67.1
Cpa.g.sc108.31 Carica papaya HOM05D003958 ORTHO05D004864 2.1e-54 216.9 154 69.5
Gorai.013G008200 Gossypium raimondii HOM05D003958 ORTHO05D004864 2.1e-54 216.9 182 61.5
HanXRQChr09g0255001 Helianthus annuus HOM05D003958 ORTHO05D004864 2.1e-54 216.9 165 64.8
Medtr6g047800 Medicago truncatula HOM05D003958 ORTHO05D004864 2.1e-54 216.9 161 67.7
Carub.0006s1277 Capsella rubella HOM05D003958 ORTHO05D004864 2.8e-54 216.5 175 63.4
Ca_00369_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 3.6e-54 216.1 160 67.5
Psat1g202680 Pisum sativum HOM05D003958 ORTHO05D004864 3.6e-54 216.1 158 67.1
AT5G14600 Arabidopsis thaliana HOM05D003958 ORTHO05D004864 6.1e-54 215.3 172 64.5
THA.LOC104821089 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 6.1e-54 215.3 163 66.3
AL6G25360 Arabidopsis lyrata HOM05D003958 ORTHO05D004864 1.0e-53 214.5 172 65.1
Oeu057051.1 Olea europaea HOM05D003958 ORTHO05D004864 1.0e-53 214.5 161 67.1
TPR.G33516 Trifolium pratense HOM05D003958 ORTHO05D004864 1.0e-53 214.5 163 68.1
A10p24040 Brassica napus HOM05D003958 ORTHO05D004864 4.0e-53 212.6 172 62.2
TPR.G11724 Trifolium pratense HOM05D003958 ORTHO05D004864 4.0e-53 212.6 164 64.6
C09p62510 Brassica napus HOM05D003958 ORTHO05D004864 5.2e-53 212.2 172 62.2
VMungo0540G0822 Vigna mungo HOM05D003958 ORTHO05D004864 6.8e-53 211.8 166 63.9
Aa31LG11G15350 Aethionema arabicum HOM05D003958 ORTHO05D004864 8.9e-53 211.5 175 61.1
THA.LOC104802398 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 1.2e-52 211.1 170 65.3
BraA10t44467Z Brassica rapa HOM05D003958 ORTHO05D004864 1.5e-52 210.7 172 61.6
Phvul.006G181700 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 1.5e-52 210.7 167 64.1
Migut.H00096 Erythranthe guttata HOM05D003958 ORTHO05D004864 2.0e-52 210.3 160 67.5
MSTRG.3157 Avicennia marina HOM05D003958 ORTHO05D004864 2.6e-52 209.9 160 66.9
Thhalv10014133m.g Eutrema salsugineum HOM05D003958 ORTHO05D004864 3.4e-52 209.5 172 62.8
Lsat_1_v5_gn_4_183181 Lactuca sativa HOM05D003958 ORTHO05D004864 7.5e-52 208.4 170 63.5
unitig_62.g23558 Utricularia gibba HOM05D003958 ORTHO05D004864 7.5e-52 208.4 164 66.5
BolC9t59091H Brassica oleracea HOM05D003958 ORTHO05D004864 9.8e-52 208.0 179 59.2
BcaNung03113 Brassica carinata HOM05D003958 ORTHO05D004864 3.7e-51 206.1 168 60.7
Glyma.15G078000 Glycine max HOM05D003958 ORTHO05D004864 6.4e-51 205.3 165 64.2
Sp6g29430 Schrenkiella parvula HOM05D003958 ORTHO05D004864 1.1e-50 204.5 170 61.2
Glyma.13G234900 Glycine max HOM05D003958 ORTHO05D004864 2.4e-50 203.4 166 64.5
ATR0057G029 Amborella trichopoda HOM05D003958 ORTHO05D004864 5.4e-50 202.2 165 64.8
Zm00001eb071120 Zea mays HOM05D003958 ORTHO05D004864 7.0e-50 201.8 161 62.7
Os04g0319600 Oryza sativa ssp. japonica HOM05D003958 ORTHO05D004864 3.0e-48 196.4 161 60.9
SGA_v2.0_scaffold196G40937 Striga asiatica HOM05D003958 ORTHO05D004864 8.6e-48 194.9 188 56.4
CSS0027303 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 1.1e-47 194.5 163 60.7
FAN14G0618 Fragaria x ananassa HOM05D003958 ORTHO05D004864 3.1e-45 186.4 143 67.8
SEGI_01237 Sequoiadendron giganteum HOM05D003958 ORTHO05D004864 3.4e-44 183.0 175 58.9
Cfa007405 Carpinus fangiana HOM05D003958 ORTHO05D004864 1.3e-43 181.0 100 82.0
GSVIVG01032441001 Vitis vinifera HOM05D000462 ORTHO05D002607 6.4e-43 178.7 112 76.8
FAN09G1134 Fragaria x ananassa HOM05D003958 ORTHO05D004864 4.1e-42 176.0 110 77.3
Pp3c18_5220 Physcomitrium patens HOM05D003958 ORTHO05D004864 9.2e-42 174.9 184 52.7
MD17G1031500 Malus domestica HOM05D003958 ORTHO05D004864 1.3e-40 171.0 100 81.0
BcaC03g13470 Brassica carinata HOM05D003958 ORTHO05D004864 1.5e-39 167.5 159 54.1
AagrBONN_evm.TU.Sc2ySwM_344.690 Anthoceros agrestis HOM05D003958 ORTHO05D004864 5.6e-39 165.6 173 52.0
FAN14G4368 Fragaria x ananassa HOM05D000001 ORTHO05D000003 7.3e-39 165.2 155 57.4
SMO361G0823 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 1.1e-37 161.4 168 51.2
SMO361G0280 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 1.4e-37 161.0 168 51.8
Mapoly0053s0094 Marchantia polymorpha HOM05D003958 ORTHO05D004864 5.8e-36 155.6 203 43.8
SGA_v2.0_scaffold34G13865 Striga asiatica HOM05D003958 ORTHO05D004864 2.4e-34 150.2 145 55.9
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 1.2e-30 137.9 116 57.8
Dinv35088 Davidia involucrata HOM05D003958 ORTHO05D004864 2.3e-29 133.7 165 49.1
FAN05G2568 Fragaria x ananassa HOM05D003958 ORTHO05D004864 4.0e-29 132.9 138 54.3
arahy.Tifrunner.gnm1.ann1.FV4QAS Arachis hypogaea HOM05D003958 ORTHO05D004864 6.8e-29 132.1 164 50.0
BcaC01g04875 Brassica carinata HOM05D003958 ORTHO05D004864 6.8e-29 132.1 145 49.0
Medtr2g014590 Medicago truncatula HOM05D003958 ORTHO05D004864 6.8e-29 132.1 84 72.6
HPP92_013732 Vanilla planifolia HOM05D003958 ORTHO05D004864 1.2e-28 131.3 78 70.5
arahy.Tifrunner.gnm1.ann1.M5ZQAR Arachis hypogaea HOM05D003958 ORTHO05D004864 3.8e-27 126.3 79 73.4
Atru.chr6.2248 Acer truncatum HOM05D003958 ORTHO05D004864 1.9e-26 124.0 97 63.9
MCO10G191 Micromonas commoda HOM05D003958 ORTHO05D004864 1.6e-25 120.9 176 41.5
Cre05.g244236 Chlamydomonas reinhardtii HOM05D003958 ORTHO05D004864 4.3e-23 112.8 195 39.5
PRCOL_00006622 Prasinoderma coloniale HOM05D003958 ORTHO05D004864 1.6e-22 110.9 209 35.9
C03p32750 Brassica napus HOM05D003958 ORTHO05D004864 5.2e-21 105.9 108 50.9
BolC3t15610H Brassica oleracea HOM05D003958 ORTHO05D004864 5.2e-21 105.9 108 50.9
Gohir.D11G176600 Gossypium hirsutum HOM05D003958 ORTHO05D004864 4.9e-19 99.4 92 55.4
Gorai.013G272500 Gossypium raimondii HOM05D003958 ORTHO05D004864 2.1e-17 94.0 92 54.3
Gohir.D07G000766 Gossypium hirsutum HOM05D003958 ORTHO05D004864 7.8e-17 92.0 92 53.3
Haze_26162 Corylus avellana HOM05D003958 ORTHO05D004864 1.3e-16 91.3 215 34.9
Gohir.D08G275100 Gossypium hirsutum HOM05D003958 ORTHO05D005872 1.3e-16 91.3 50 84.0
Gorai.N025700 Gossypium raimondii HOM05D003958 ORTHO05D005872 1.3e-16 91.3 50 84.0
arahy.Tifrunner.gnm1.ann1.Z5MU8N Arachis hypogaea HOM05D003958 ORTHO05D004864 3.0e-16 90.1 123 50.4
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 3.0e-16 90.1 47 85.1
Gohir.1Z049564 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.9e-16 89.7 50 82.0
Gohir.1Z049570 Gossypium hirsutum HOM05D003958 ORTHO05D005872 3.9e-16 89.7 50 82.0
Gorai.007G000600 Gossypium raimondii HOM05D001392 ORTHO05D014312 1.9e-15 87.4 73 58.9
Nitab4.5_0001556g0020 Nicotiana tabacum HOM05D003958 ORTHO05D004864 1.9e-15 87.4 81 56.8
FAN05G2311 Fragaria x ananassa HOM05D003958 ORTHO05D004864 5.6e-15 85.9 105 47.6
Ah.01g022500 Amaranthus hybridus HOM05D000264 ORTHO05D000152 8.1e-14 82.0 63 71.4
Ah.01g022540 Amaranthus hybridus HOM05D000264 ORTHO05D000152 4.0e-13 79.7 86 54.7
Gohir.A12G000201 Gossypium hirsutum HOM05D003958 ORTHO05D004864 9.9e-12 75.1 88 47.7
BcaC03g13467 Brassica carinata HOM05D002486 ORTHO05D002606 4.6e-09 66.2 153 32.7
EL10Ac6g14901 Beta vulgaris HOM05D000264 ORTHO05D000152 4.3e-07 59.7 70 51.4
Medtr2g014570 Medicago truncatula HOM05D003958 ORTHO05D004864 8.1e-06 55.5 48 58.3


User provided reference genes

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