Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.07g203210 Amaranthus hybridus HOM05D004821 ORTHO05D005711 1.0e-90 336.7 164 100.0
Ah.13g073170 Amaranthus hybridus HOM05D004821 ORTHO05D005711 9.4e-84 313.5 162 92.0
Hund22594 Selenicereus undatus HOM05D004821 ORTHO05D005711 2.1e-75 285.8 159 84.3
AUR62023709 Chenopodium quinoa HOM05D004821 ORTHO05D005711 2.2e-72 275.8 161 80.7
AUR62002483 Chenopodium quinoa HOM05D004821 ORTHO05D005711 4.8e-72 274.6 161 80.7
EL10Ac3g06166 Beta vulgaris HOM05D004821 ORTHO05D005711 2.4e-71 272.3 159 81.8
Nn1g09422 Nelumbo nucifera HOM05D004821 ORTHO05D005711 7.7e-70 267.3 159 78.6
TAR362G0479 Trochodendron aralioides HOM05D004821 ORTHO05D005711 3.8e-69 265.0 159 79.9
Actinidia18397 Actinidia chinensis HOM05D004821 ORTHO05D005711 1.5e-68 263.1 159 76.7
Cfa008514 Carpinus fangiana HOM05D004821 ORTHO05D005711 4.7e-67 258.1 159 75.5
Haze_11130 Corylus avellana HOM05D004821 ORTHO05D005711 1.0e-66 256.9 159 75.5
Prupe.7G269800 Prunus persica HOM05D004821 ORTHO05D005711 1.5e-65 253.1 159 74.2
Thecc.03G204200 Theobroma cacao HOM05D004821 ORTHO05D005711 2.0e-65 252.7 159 72.3
CAN.G458.7 Capsicum annuum HOM05D004821 ORTHO05D005711 2.6e-65 252.3 163 71.8
RcHm_v2.0_Chr2g0084461 Rosa chinensis HOM05D004821 ORTHO05D005711 2.6e-65 252.3 159 73.6
Nitab4.5_0000129g0470 Nicotiana tabacum HOM05D004821 ORTHO05D005711 3.3e-65 251.9 163 71.8
Aqoxy5G00034 Aquilegia oxysepala HOM05D004821 ORTHO05D005711 4.4e-65 251.5 161 72.7
Hma1.2p1_0872F.1_g231140 Hydrangea macrophylla HOM05D004821 ORTHO05D005711 4.4e-65 251.5 159 74.2
Gorai.007G016400 Gossypium raimondii HOM05D004821 ORTHO05D005711 5.7e-65 251.1 159 73.6
Cpa.g.sc151.7 Carica papaya HOM05D004821 ORTHO05D005711 7.5e-65 250.8 158 73.4
Nitab4.5_0006607g0020 Nicotiana tabacum HOM05D004821 ORTHO05D005711 9.7e-65 250.4 163 71.2
MD15G1143200 Malus domestica HOM05D004821 ORTHO05D005711 1.3e-64 250.0 159 72.3
Solyc04g008520.3 Solanum lycopersicum HOM05D004821 ORTHO05D005711 1.3e-64 250.0 162 71.0
Glyma.17G000700 Glycine max HOM05D004821 ORTHO05D005711 2.2e-64 249.2 159 69.2
Gohir.A11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 3.7e-64 248.4 159 73.0
MBI10_g16333_MAGBIO Magnolia biondii HOM05D004821 ORTHO05D005711 3.7e-64 248.4 159 74.8
Peaxi162Scf00329g00933 Petunia axillaris HOM05D004821 ORTHO05D005711 6.3e-64 247.7 162 69.8
Sopen04g003670 Solanum pennellii HOM05D004821 ORTHO05D005711 8.2e-64 247.3 163 69.9
Manes.01G010100 Manihot esculenta HOM05D004821 ORTHO05D005711 1.1e-63 246.9 159 71.7
Rhsim09G0003600 Rhododendron simsii HOM05D004821 ORTHO05D005711 1.4e-63 246.5 159 73.0
TPR.G5989 Trifolium pratense HOM05D004821 ORTHO05D005711 1.4e-63 246.5 162 70.4
MD00G1087400 Malus domestica HOM05D004821 ORTHO05D005711 3.1e-63 245.4 159 71.7
CANSAT56G1350 Cannabis sativa HOM05D004821 ORTHO05D005711 4.1e-63 245.0 163 71.2
PGR042G3220 Punica granatum HOM05D004821 ORTHO05D005711 4.1e-63 245.0 160 71.9
CiPaw.01G201700 Carya illinoinensis HOM05D004821 ORTHO05D005711 5.3e-63 244.6 159 70.4
Ciclev10021021m.g Citrus clementina HOM05D004821 ORTHO05D005711 5.3e-63 244.6 159 71.7
Phvul.003G074500 Phaseolus vulgaris HOM05D004821 ORTHO05D005711 5.3e-63 244.6 159 70.4
QL10p064358 Quercus lobata HOM05D004821 ORTHO05D005711 9.1e-63 243.8 159 70.4
VMungo1215G0856 Vigna mungo HOM05D004821 ORTHO05D005711 1.2e-62 243.4 159 69.2
Psat4g001240 Pisum sativum HOM05D004821 ORTHO05D005711 2.0e-62 242.7 163 69.3
CiPaw.02G124700 Carya illinoinensis HOM05D004821 ORTHO05D005711 2.7e-62 242.3 159 69.2
CSS0009446 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 3.5e-62 241.9 159 69.8
CSS0027099 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 3.5e-62 241.9 159 69.8
PGSC0003DMG400029438 Solanum tuberosum HOM05D004821 ORTHO05D005711 3.5e-62 241.9 163 67.5
COL.COLO4_16819 Corchorus olitorius HOM05D004821 ORTHO05D005711 4.5e-62 241.5 159 71.7
PSO732G0644 Papaver somniferum HOM05D004821 ORTHO05D005711 4.5e-62 241.5 161 70.8
PSO675G6376 Papaver somniferum HOM05D004821 ORTHO05D005711 1.0e-61 240.4 161 70.2
Ca_13543_v3 Cicer arietinum L. HOM05D004821 ORTHO05D005711 1.3e-61 240.0 165 67.9
FvH4_1g00191 Fragaria vesca HOM05D004821 ORTHO05D005711 2.2e-61 239.2 159 69.2
FAN26G2560 Fragaria x ananassa HOM05D004821 ORTHO05D005711 2.2e-61 239.2 159 69.2
FAN26G2598 Fragaria x ananassa HOM05D004821 ORTHO05D005711 2.2e-61 239.2 159 69.2
Oeu033086.1 Olea europaea HOM05D004821 ORTHO05D005711 2.2e-61 239.2 162 69.8
Hund12277 Selenicereus undatus HOM05D004821 ORTHO05D005711 2.2e-61 239.2 159 69.2
arahy.Tifrunner.gnm1.ann1.PJYW2S Arachis hypogaea HOM05D004821 ORTHO05D005711 3.8e-61 238.4 161 67.7
arahy.Tifrunner.gnm1.ann1.TNA3AF Arachis hypogaea HOM05D004821 ORTHO05D005711 3.8e-61 238.4 161 67.7
Gorai.004G122500 Gossypium raimondii HOM05D004821 ORTHO05D005711 5.0e-61 238.0 159 71.1
Gohir.A08G102400 Gossypium hirsutum HOM05D004821 ORTHO05D005711 6.5e-61 237.7 159 70.4
Gohir.D08G113600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 8.5e-61 237.3 159 71.1
Potri.007G144900 Populus trichocarpa HOM05D004821 ORTHO05D005711 1.5e-60 236.5 159 67.3
SGA_v2.0_scaffold12G06219 Striga asiatica HOM05D004821 ORTHO05D005711 1.5e-60 236.5 161 67.1
Duzib205G0343 Durio zibethinus HOM05D004821 ORTHO05D005711 2.5e-60 235.7 181 64.1
Sabra07G0115900 Salix brachista HOM05D004821 ORTHO05D005711 2.5e-60 235.7 159 67.3
Lj4g0002865 Lotus japonicus HOM05D004821 ORTHO05D005711 3.2e-60 235.3 160 67.5
Sed0001216 Sechium edule HOM05D004821 ORTHO05D005711 3.2e-60 235.3 158 69.0
Carub.0004s2652 Capsella rubella HOM05D004821 ORTHO05D005711 4.2e-60 235.0 162 69.8
DCAR_029913 Daucus carota HOM05D004821 ORTHO05D005711 4.2e-60 235.0 161 68.3
ClCG09G014480 Citrullus lanatus HOM05D004821 ORTHO05D005711 5.5e-60 234.6 159 67.3
Atru.chr3.1996 Acer truncatum HOM05D004821 ORTHO05D005711 7.2e-60 234.2 159 69.8
Cc03_g15980 Coffea canephora HOM05D004821 ORTHO05D005711 7.2e-60 234.2 162 69.1
MSTRG.4551 Avicennia marina HOM05D004821 ORTHO05D005711 1.2e-59 233.4 162 67.9
CsaV3_6G037260 Cucumis sativus L. HOM05D004821 ORTHO05D005711 1.6e-59 233.0 158 66.5
MELO3C014389.2 Cucumis melo HOM05D004821 ORTHO05D005711 2.1e-59 232.6 158 66.5
Lj6A619G67 Lonicera japonica HOM05D004821 ORTHO05D005711 2.1e-59 232.6 162 69.8
Gohir.D11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 4.7e-59 231.5 151 72.2
Medtr4g134950 Medicago truncatula HOM05D004821 ORTHO05D005711 4.7e-59 231.5 166 65.1
Thhalv10001539m.g Eutrema salsugineum HOM05D004821 ORTHO05D005711 6.1e-59 231.1 162 66.7
AL4G42830 Arabidopsis lyrata HOM05D004821 ORTHO05D005711 8.0e-59 230.7 162 67.3
CARHR139130 Cardamine hirsuta HOM05D004821 ORTHO05D005711 8.0e-59 230.7 162 66.7
Aa31LG1G25650 Aethionema arabicum HOM05D004821 ORTHO05D005711 2.3e-58 229.2 162 66.0
Eucgr.A00428 Eucalyptus grandis HOM05D004821 ORTHO05D005711 2.3e-58 229.2 159 66.7
Sp4g26050 Schrenkiella parvula HOM05D004821 ORTHO05D005711 2.3e-58 229.2 162 67.3
Actinidia11430 Actinidia chinensis HOM05D004821 ORTHO05D005711 3.0e-58 228.8 161 67.7
A03p24610 Brassica napus HOM05D004821 ORTHO05D005711 4.0e-58 228.4 162 66.7
C03p29340 Brassica napus HOM05D004821 ORTHO05D005711 4.0e-58 228.4 162 66.7
BraA03t11666Z Brassica rapa HOM05D004821 ORTHO05D005711 4.0e-58 228.4 162 66.7
AT2G43950 Arabidopsis thaliana HOM05D004821 ORTHO05D005711 5.2e-58 228.0 162 66.0
BcaB01g03351 Brassica carinata HOM05D004821 ORTHO05D005711 5.2e-58 228.0 162 66.0
Eucgr.A00426 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.5e-57 226.5 159 66.0
Lsat_1_v5_gn_7_44620 Lactuca sativa HOM05D004821 ORTHO05D005711 2.6e-57 225.7 162 68.5
Migut.G00920 Erythranthe guttata HOM05D004821 ORTHO05D005711 4.4e-57 224.9 161 66.5
Thecc.05G001800 Theobroma cacao HOM05D004821 ORTHO05D005711 5.7e-57 224.6 159 64.2
GSVIVG01038250001 Vitis vinifera HOM05D004821 ORTHO05D005711 5.7e-57 224.6 159 66.0
Potri.017G007300 Populus trichocarpa HOM05D004821 ORTHO05D005711 7.5e-57 224.2 159 65.4
Sabra17G0008100 Salix brachista HOM05D004821 ORTHO05D005711 7.5e-57 224.2 160 66.2
BraA04t18773Z Brassica rapa HOM05D004821 ORTHO05D005711 9.8e-57 223.8 164 65.9
CDE02G4358 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 9.8e-57 223.8 159 62.3
C04p70840 Brassica napus HOM05D004821 ORTHO05D005711 1.7e-56 223.0 165 64.8
A04p33140 Brassica napus HOM05D004821 ORTHO05D005711 2.2e-56 222.6 164 65.2
BcaB06g29351 Brassica carinata HOM05D004821 ORTHO05D005711 3.7e-56 221.9 163 65.0
Migut.N03030 Erythranthe guttata HOM05D004821 ORTHO05D005711 4.8e-56 221.5 161 66.5
vmacro00722 Vaccinium macrocarpon HOM05D004821 ORTHO05D005711 4.8e-56 221.5 192 59.9
BcaB06g29509 Brassica carinata HOM05D004821 ORTHO05D005711 1.1e-55 220.3 170 62.4
BolC3t15281H Brassica oleracea HOM05D004821 ORTHO05D005711 3.1e-55 218.8 176 61.4
ATR0743G163 Amborella trichopoda HOM05D004821 ORTHO05D005711 2.7e-54 215.7 159 63.5
Gohir.A12G247900 Gossypium hirsutum HOM05D004821 ORTHO05D005711 7.7e-54 214.2 159 62.9
Gorai.008G266600 Gossypium raimondii HOM05D004821 ORTHO05D005711 7.7e-54 214.2 159 62.9
Gohir.D12G248600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 2.3e-53 212.6 159 62.3
SalBow3G1744 Salvia bowleyana HOM05D004821 ORTHO05D005711 5.0e-53 211.5 200 52.5
THA.LOC104804303 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 8.6e-53 210.7 163 61.3
THA.LOC104802343 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 3.3e-52 208.8 161 60.2
Lalb_Chr13g0304481 Lupinus albus HOM05D004821 ORTHO05D005711 5.5e-52 208.0 168 61.3
ECA232G4673 Erigeron canadensis HOM05D004821 ORTHO05D005711 3.6e-51 205.3 169 61.5
Zm00001eb133840 Zea mays HOM05D004821 ORTHO05D005711 3.6e-51 205.3 158 60.8
HPP92_004526 Vanilla planifolia HOM05D004821 ORTHO05D005711 4.7e-51 204.9 160 59.4
Eucgr.D01249 Eucalyptus grandis HOM05D004821 ORTHO05D005711 8.0e-51 204.1 153 64.1
HPP92_004517 Vanilla planifolia HOM05D004821 ORTHO05D005711 1.0e-50 203.8 160 59.4
Os02g0608900 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 1.8e-50 203.0 158 58.9
HanXRQChr03g0094031 Helianthus annuus HOM05D004821 ORTHO05D005711 2.0e-46 189.5 167 56.9
Eucgr.D01533 Eucalyptus grandis HOM05D004821 ORTHO05D005711 2.9e-45 185.7 153 61.4
Sc25g0003030 Simmondsia chinensis HOM05D004821 ORTHO05D005711 9.5e-44 180.6 126 70.6
unitig_37.g12004 Utricularia gibba HOM05D004821 ORTHO05D005711 2.1e-43 179.5 159 54.7
Dinv24752 Davidia involucrata HOM05D004821 ORTHO05D005711 4.7e-43 178.3 123 69.9
BcaC02g07141 Brassica carinata HOM05D004821 ORTHO05D005711 4.0e-42 175.3 179 52.0
AagrBONN_evm.TU.Sc2ySwM_362.2829 Anthoceros agrestis HOM05D004821 ORTHO05D005711 2.0e-41 172.9 160 53.1
Pp3c26_11540 Physcomitrium patens HOM05D004821 ORTHO05D005711 4.4e-41 171.8 159 51.6
Eucgr.L00828 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.7e-40 169.9 159 54.7
Pp3c3_3220 Physcomitrium patens HOM05D004821 ORTHO05D005711 4.9e-40 168.3 159 52.2
Mapoly0065s0080 Marchantia polymorpha HOM05D004821 ORTHO05D005711 3.6e-35 152.1 164 47.0
SMO119G0235 Selaginella moellendorffii HOM05D004821 ORTHO05D005711 1.1e-34 150.6 159 43.4
Duzib084G0132 Durio zibethinus HOM05D004821 ORTHO05D005711 8.9e-34 147.5 159 49.1
Zm00001eb246750 Zea mays HOM05D004821 ORTHO05D005711 1.1e-31 140.6 137 51.8
MD09G1202400 Malus domestica HOM05D004821 ORTHO05D005711 1.0e-29 134.0 99 67.7
Oeu053428.1 Olea europaea HOM05D004821 ORTHO05D005711 2.3e-29 132.9 114 57.0
BcaB04g18803 Brassica carinata HOM05D004821 ORTHO05D005711 1.6e-27 126.7 72 80.6
BcaC05g24570 Brassica carinata HOM05D000813 ORTHO05D004282 5.8e-25 118.2 76 72.4
CBR_g30320 Chara braunii HOM05D004821 ORTHO05D005711 5.1e-21 105.1 164 34.1
RcHm_v2.0_Chr7g0203201 Rosa chinensis HOM05D004821 ORTHO05D005711 2.1e-19 99.8 80 58.8
BcaB02g11099 Brassica carinata HOM05D004821 ORTHO05D005711 6.4e-16 88.2 58 69.0
BcaC07g42475 Brassica carinata HOM05D004821 ORTHO05D005711 8.4e-16 87.8 58 70.7
QL10p064343 Quercus lobata HOM05D004821 ORTHO05D005711 1.2e-14 84.0 41 82.9
Actinidia34565 Actinidia chinensis HOM05D004821 ORTHO05D005711 2.3e-13 79.7 41 78.0
CDE09G1416 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 5.1e-13 78.6 61 57.4


User provided reference genes

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