Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.07g202990 Amaranthus hybridus HOM05D004131 ORTHO05D004778 5.9e-80 300.8 154 100.0
Ah.13g073340 Amaranthus hybridus HOM05D004131 ORTHO05D004778 2.3e-44 182.6 102 90.2
Atru.chr4.1513 Acer truncatum HOM05D004131 ORTHO05D004778 8.3e-42 174.1 102 85.3
Hund12374 Selenicereus undatus HOM05D004131 ORTHO05D004778 3.2e-41 172.2 94 90.4
Glyma.07G206100 Glycine max HOM05D004131 ORTHO05D004778 4.1e-41 171.8 102 82.4
Ca_18622_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 5.4e-41 171.4 102 82.4
Ca_18628_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 5.4e-41 171.4 102 82.4
Lj4g0014155 Lotus japonicus HOM05D004131 ORTHO05D004778 5.4e-41 171.4 102 82.4
TWI38G2196 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 5.4e-41 171.4 102 82.4
Sabra07G0113200 Salix brachista HOM05D004131 ORTHO05D004778 7.1e-41 171.0 102 81.4
Sabra07G0117600 Salix brachista HOM05D004131 ORTHO05D004778 7.1e-41 171.0 102 81.4
Gohir.A10G146200 Gossypium hirsutum HOM05D004131 ORTHO05D004778 9.2e-41 170.6 102 83.3
Gorai.011G132700 Gossypium raimondii HOM05D004131 ORTHO05D004778 9.2e-41 170.6 102 83.3
Phvul.003G059400 Phaseolus vulgaris HOM05D004131 ORTHO05D004778 9.2e-41 170.6 99 83.8
Glyma.02G138900 Glycine max HOM05D004131 ORTHO05D004778 1.2e-40 170.2 102 81.4
Cfa021469 Carpinus fangiana HOM05D004131 ORTHO05D004778 2.1e-40 169.5 102 79.4
Duzib268G1863 Durio zibethinus HOM05D004131 ORTHO05D004778 2.1e-40 169.5 102 81.4
Gohir.D10G120800 Gossypium hirsutum HOM05D004131 ORTHO05D004778 2.1e-40 169.5 102 82.4
Ciclev10022332m.g Citrus clementina HOM05D004131 ORTHO05D004778 2.7e-40 169.1 102 83.3
Potri.007G139900 Populus trichocarpa HOM05D004131 ORTHO05D004778 2.7e-40 169.1 102 80.4
TWI63G0908 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 2.7e-40 169.1 102 80.4
EL10Ac3g06119 Beta vulgaris HOM05D004131 ORTHO05D004778 3.5e-40 168.7 95 90.5
FvH4_1g00470 Fragaria vesca HOM05D004131 ORTHO05D004778 3.5e-40 168.7 102 81.4
Dinv33225 Davidia involucrata HOM05D004131 ORTHO05D004778 4.6e-40 168.3 102 80.4
TPR.G23549 Trifolium pratense HOM05D004131 ORTHO05D004778 4.6e-40 168.3 99 82.8
Aqoxy2G04165 Aquilegia oxysepala HOM05D004131 ORTHO05D004778 6.0e-40 167.9 102 78.4
Duzib212G0438 Durio zibethinus HOM05D004131 ORTHO05D004778 6.0e-40 167.9 102 81.4
GSVIVG01038193001 Vitis vinifera HOM05D004131 ORTHO05D004778 6.0e-40 167.9 102 80.4
Medtr4g087630 Medicago truncatula HOM05D004131 ORTHO05D004778 7.8e-40 167.5 99 81.8
COL.COLO4_04655 Corchorus olitorius HOM05D004131 ORTHO05D004778 1.0e-39 167.2 102 84.3
FAN28G1052 Fragaria x ananassa HOM05D004131 ORTHO05D004778 1.0e-39 167.2 102 80.4
Potri.017G010100 Populus trichocarpa HOM05D004131 ORTHO05D004778 1.0e-39 167.2 102 80.4
Sc13g0007290 Simmondsia chinensis HOM05D004131 ORTHO05D004778 2.3e-39 166.0 92 89.1
AUR62002422 Chenopodium quinoa HOM05D004131 ORTHO05D004778 3.0e-39 165.6 134 69.4
Psat7g119160 Pisum sativum HOM05D004131 ORTHO05D004778 3.0e-39 165.6 98 82.7
TAR636G2398 Trochodendron aralioides HOM05D004131 ORTHO05D004778 3.0e-39 165.6 101 82.2
AUR62023766 Chenopodium quinoa HOM05D004131 ORTHO05D004778 3.9e-39 165.2 103 83.5
Cc03_g14990 Coffea canephora HOM05D004131 ORTHO05D004778 3.9e-39 165.2 102 81.4
Lalb_Chr16g0384341 Lupinus albus HOM05D004131 ORTHO05D004778 6.6e-39 164.5 122 68.9
CSS0004184 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 8.6e-39 164.1 102 79.4
CSS0028329 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 8.6e-39 164.1 102 79.4
FAN23G0024 Fragaria x ananassa HOM05D004131 ORTHO05D004778 8.6e-39 164.1 97 83.5
Manes.01G017500 Manihot esculenta HOM05D004131 ORTHO05D004778 8.6e-39 164.1 102 81.4
CAN.G448.4 Capsicum annuum HOM05D004131 ORTHO05D004778 1.1e-38 163.7 95 84.2
FAN26G1335 Fragaria x ananassa HOM05D004131 ORTHO05D004778 1.1e-38 163.7 100 81.0
Peaxi162Scf00483g00111 Petunia axillaris HOM05D004131 ORTHO05D004778 1.1e-38 163.7 95 84.2
RcHm_v2.0_Chr2g0084981 Rosa chinensis HOM05D004131 ORTHO05D004778 1.1e-38 163.7 97 82.5
PGSC0003DMG400005367 Solanum tuberosum HOM05D004131 ORTHO05D004778 1.1e-38 163.7 96 83.3
Haze_11173 Corylus avellana HOM05D004131 ORTHO05D004778 1.5e-38 163.3 104 76.9
Haze_11178 Corylus avellana HOM05D004131 ORTHO05D004778 1.5e-38 163.3 104 76.9
Dinv18309 Davidia involucrata HOM05D004131 ORTHO05D004778 1.5e-38 163.3 102 78.4
MD15G1147200 Malus domestica HOM05D004131 ORTHO05D004778 1.5e-38 163.3 97 81.4
Nn7g37517 Nelumbo nucifera HOM05D004131 ORTHO05D004778 1.5e-38 163.3 104 79.8
Nitab4.5_0000064g0030 Nicotiana tabacum HOM05D004131 ORTHO05D004778 1.5e-38 163.3 96 83.3
Nitab4.5_0005089g0010 Nicotiana tabacum HOM05D004131 ORTHO05D004778 1.5e-38 163.3 96 83.3
unitig_8.g3637 Utricularia gibba HOM05D004131 ORTHO05D004778 1.5e-38 163.3 102 77.5
MD02G1003900 Malus domestica HOM05D004131 ORTHO05D004778 1.9e-38 162.9 102 78.4
PSO675G2278 Papaver somniferum HOM05D004131 ORTHO05D004778 1.9e-38 162.9 103 78.6
Solyc12g019470.2 Solanum lycopersicum HOM05D004131 ORTHO05D004778 1.9e-38 162.9 100 80.0
Sopen12g009750 Solanum pennellii HOM05D004131 ORTHO05D004778 1.9e-38 162.9 100 80.0
THA.LOC104804159 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 1.9e-38 162.9 97 83.5
Lalb_Chr05g0218801 Lupinus albus HOM05D004131 ORTHO05D004778 2.5e-38 162.5 122 69.7
CiPaw.01G198800 Carya illinoinensis HOM05D004131 ORTHO05D004778 4.3e-38 161.8 96 83.3
TAR362G1052 Trochodendron aralioides HOM05D004131 ORTHO05D004778 4.3e-38 161.8 102 77.5
Actinidia18408 Actinidia chinensis HOM05D004131 ORTHO05D004778 9.5e-38 160.6 102 77.5
Migut.G00833 Erythranthe guttata HOM05D004131 ORTHO05D004778 9.5e-38 160.6 102 76.5
AT3G59800 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 1.2e-37 160.2 98 79.6
ECA130G0002 Erigeron canadensis HOM05D004131 ORTHO05D004778 1.2e-37 160.2 102 75.5
CANSAT56G2001 Cannabis sativa HOM05D004131 ORTHO05D004778 1.6e-37 159.8 93 82.8
SalBow3G2571 Salvia bowleyana HOM05D004131 ORTHO05D004778 1.6e-37 159.8 94 80.9
AL5G41850 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 2.1e-37 159.5 102 76.5
Sp4g25870 Schrenkiella parvula HOM05D004131 ORTHO05D004778 2.1e-37 159.5 98 79.6
Migut.N03052 Erythranthe guttata HOM05D004131 ORTHO05D004778 2.8e-37 159.1 102 74.5
THA.LOC104805841 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 2.8e-37 159.1 98 79.6
Aa31LG10G14050 Aethionema arabicum HOM05D004131 ORTHO05D004778 4.7e-37 158.3 98 77.6
MSTRG.24561 Avicennia marina HOM05D004131 ORTHO05D004778 4.7e-37 158.3 102 75.5
PSO017G4173 Papaver somniferum HOM05D004131 ORTHO05D004778 6.2e-37 157.9 98 80.6
Eucgr.G01598 Eucalyptus grandis HOM05D004131 ORTHO05D004778 8.1e-37 157.5 92 82.6
Eucgr.L00027 Eucalyptus grandis HOM05D004131 ORTHO05D004778 8.1e-37 157.5 92 82.6
Prupe.7G267400 Prunus persica HOM05D004131 ORTHO05D004778 8.1e-37 157.5 109 73.4
HPP92_023727 Vanilla planifolia HOM05D004131 ORTHO05D004778 8.1e-37 157.5 101 77.2
Lsat_1_v5_gn_7_67880 Lactuca sativa HOM05D004131 ORTHO05D004778 1.1e-36 157.1 102 74.5
THA.LOC104802336 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 1.1e-36 157.1 96 81.2
ATR0743G176 Amborella trichopoda HOM05D004131 ORTHO05D004778 1.8e-36 156.4 104 73.1
CARHR138980 Cardamine hirsuta HOM05D004131 ORTHO05D004778 1.8e-36 156.4 98 78.6
CDE08G0022 Ceratophyllum demersum HOM05D004131 ORTHO05D004778 1.8e-36 156.4 102 73.5
MELO3C022231.2 Cucumis melo HOM05D004131 ORTHO05D004778 1.8e-36 156.4 103 77.7
HanXRQChr02g0059071 Helianthus annuus HOM05D004131 ORTHO05D004778 1.8e-36 156.4 95 78.9
BraA04t15927Z Brassica rapa HOM05D004131 ORTHO05D004778 2.3e-36 156.0 97 77.3
Thhalv10006256m.g Eutrema salsugineum HOM05D004131 ORTHO05D004778 2.3e-36 156.0 102 74.5
BcaC02g10087 Brassica carinata HOM05D004131 ORTHO05D004778 4.0e-36 155.2 103 73.8
C04p32910 Brassica napus HOM05D004131 ORTHO05D004778 4.0e-36 155.2 103 73.8
CsaV3_5G040580 Cucumis sativus L. HOM05D004131 ORTHO05D004778 4.0e-36 155.2 103 77.7
ECA233G3286 Erigeron canadensis HOM05D004131 ORTHO05D004778 4.0e-36 155.2 96 77.1
BcaB02g08209 Brassica carinata HOM05D004131 ORTHO05D004778 5.2e-36 154.8 103 72.8
A04p02020 Brassica napus HOM05D004131 ORTHO05D004778 5.2e-36 154.8 103 73.8
Sp5g03340 Schrenkiella parvula HOM05D004131 ORTHO05D004778 5.2e-36 154.8 101 74.3
Actinidia28972 Actinidia chinensis HOM05D004131 ORTHO05D004778 8.9e-36 154.1 94 80.9
BolC4t24854H Brassica oleracea HOM05D004131 ORTHO05D004778 8.9e-36 154.1 97 76.3
BcaB02g08900 Brassica carinata HOM05D004131 ORTHO05D004778 1.5e-35 153.3 100 77.0
BcaC02g12362 Brassica carinata HOM05D004131 ORTHO05D004778 1.5e-35 153.3 100 77.0
C04p04750 Brassica napus HOM05D004131 ORTHO05D004778 1.5e-35 153.3 100 77.0
BolC4t22105H Brassica oleracea HOM05D004131 ORTHO05D004778 2.0e-35 152.9 106 72.6
MBI07_g36705_MAGBIO Magnolia biondii HOM05D004131 ORTHO05D004778 2.0e-35 152.9 98 77.6
CSS0000211 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 2.6e-35 152.5 94 77.7
CSS0046112 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 2.6e-35 152.5 94 77.7
Carub.0004s2633 Capsella rubella HOM05D004131 ORTHO05D004778 2.6e-35 152.5 98 75.5
CiPaw.02G123300 Carya illinoinensis HOM05D004131 ORTHO05D004778 5.8e-35 151.4 93 78.5
arahy.Tifrunner.gnm1.ann1.GY80IK Arachis hypogaea HOM05D004131 ORTHO05D004778 2.9e-34 149.1 124 66.1
Sabra17G0009400 Salix brachista HOM05D004131 ORTHO05D004778 2.9e-34 149.1 126 62.7
A05p04000 Brassica napus HOM05D004131 ORTHO05D004778 3.7e-34 148.7 101 76.2
BraA05t19388Z Brassica rapa HOM05D004131 ORTHO05D004778 3.7e-34 148.7 101 76.2
Lj6C265T11 Lonicera japonica HOM05D004131 ORTHO05D004778 3.7e-34 148.7 102 69.6
Mapoly0055s0100 Marchantia polymorpha HOM05D004131 ORTHO05D004778 4.9e-34 148.3 104 74.0
Zm00001eb425720 Zea mays HOM05D004131 ORTHO05D004778 8.4e-34 147.5 96 78.1
SalBow6G7192 Salvia bowleyana HOM05D004131 ORTHO05D004778 2.4e-33 146.0 103 71.8
AagrBONN_evm.TU.Sc2ySwM_344.2765 Anthoceros agrestis HOM05D004131 ORTHO05D004778 1.6e-32 143.3 115 66.1
VMungo0251G3663 Vigna mungo HOM05D004131 ORTHO05D004778 7.8e-32 141.0 82 84.1
PGR042G3815 Punica granatum HOM05D004131 ORTHO05D004778 1.0e-31 140.6 80 87.5
Sed0002263 Sechium edule HOM05D004131 ORTHO05D004778 5.1e-31 138.3 81 85.2
Pp3c3_18840 Physcomitrium patens HOM05D004131 ORTHO05D004778 1.2e-29 133.7 105 65.7
SMO364G0381 Selaginella moellendorffii HOM05D004131 ORTHO05D004778 4.0e-28 128.6 103 64.1
vmacro15701 Vaccinium macrocarpon HOM05D004131 ORTHO05D004778 8.9e-28 127.5 156 48.1
Lju470A13T20 Lonicera japonica HOM05D004131 ORTHO05D004778 1.5e-27 126.7 84 72.6
Lju470A13G17 Lonicera japonica HOM05D004131 ORTHO05D004778 7.6e-27 124.4 80 75.0
Aqoxy604s001 Aquilegia oxysepala HOM05D004131 ORTHO05D004778 3.2e-25 119.0 115 59.1
AL4G42670 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 3.2e-25 119.0 83 74.7
AT2G43795 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 1.2e-24 117.1 83 73.5
Rhsim02G0086100 Rhododendron simsii HOM05D004131 ORTHO05D004778 1.2e-24 117.1 182 41.2
SEGI_19170 Sequoiadendron giganteum HOM05D004131 ORTHO05D004778 4.3e-22 108.6 87 67.8
CARHR170140 Cardamine hirsuta HOM05D004131 ORTHO05D004778 7.3e-22 107.8 70 75.7
Actinidia11437 Actinidia chinensis HOM05D004131 ORTHO05D004778 9.6e-22 107.5 62 79.0
RhsimUnG0015600 Rhododendron simsii HOM05D004131 ORTHO05D004778 1.1e-20 104.0 216 34.7
BcaC07g40454 Brassica carinata HOM05D004131 ORTHO05D004778 1.2e-19 100.5 81 66.7
QL10p058548 Quercus lobata HOM05D004131 ORTHO05D004778 9.9e-19 97.4 56 80.4
QL10p059325 Quercus lobata HOM05D004131 ORTHO05D004778 9.9e-19 97.4 56 80.4
CBR_g6538 Chara braunii HOM05D004131 ORTHO05D004778 1.3e-18 97.1 74 62.2
Lj6C255T9 Lonicera japonica HOM05D004131 ORTHO05D004778 1.7e-15 86.7 75 61.3
BcaB02g08224 Brassica carinata HOM05D004131 ORTHO05D004778 3.9e-15 85.5 61 70.5
C08p34760 Brassica napus HOM05D004131 ORTHO05D004778 5.1e-15 85.1 117 47.0
BolC8t51078H Brassica oleracea HOM05D004131 ORTHO05D004778 5.1e-15 85.1 117 47.0
BcaC07g40508 Brassica carinata HOM05D004131 ORTHO05D004778 8.7e-15 84.3 78 59.0
BraA09t40640Z Brassica rapa HOM05D004131 ORTHO05D004778 1.1e-14 84.0 73 58.9
Cre16.g660850 Chlamydomonas reinhardtii HOM05D004131 ORTHO05D004778 4.8e-13 78.6 102 45.1
Oeu050314.3 Olea europaea HOM05D004131 ORTHO05D004778 6.2e-13 78.2 130 42.3
QL10p058544 Quercus lobata HOM05D004131 ORTHO05D004778 1.2e-11 73.9 48 79.2
Thecc.04G162100 Theobroma cacao HOM05D004131 ORTHO05D004778 1.2e-11 73.9 51 80.4
ClCG08G000030 Citrullus lanatus HOM05D004131 ORTHO05D004778 2.0e-11 73.2 102 49.0
QL10p059329 Quercus lobata HOM05D004131 ORTHO05D004778 5.8e-11 71.6 45 82.2
Sed0017538 Sechium edule HOM05D004131 ORTHO05D004778 7.6e-11 71.2 34 88.2
SGA_v2.0_scaffold37G14924 Striga asiatica HOM05D004131 ORTHO05D004778 3.8e-10 68.9 144 36.8
MSTRG.9725 Avicennia marina HOM05D005043 ORTHO05D000110 1.9e-09 66.6 105 41.0
BcaC07g40452 Brassica carinata HOM05D004131 ORTHO05D004778 1.0e-07 60.8 46 69.6
Carub.0005s2652 Capsella rubella HOM05D004131 ORTHO05D004778 8.7e-07 57.8 41 73.2
Lju470A13T22 Lonicera japonica HOM05D004131 ORTHO05D004778 1.5e-06 57.0 48 62.5
Zm00001eb027620 Zea mays HOM05D002020 ORTHO05D002046 4.3e-06 55.5 40 72.5


User provided reference genes

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