Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.07g202920 Amaranthus hybridus HOM05D007605 ORTHO05D009572 3.0e-38 161.4 84 100.0
AUR62002411 Chenopodium quinoa HOM05D007605 ORTHO05D009572 5.8e-21 104.0 54 90.7
EL10Ac3g06103 Beta vulgaris HOM05D007605 ORTHO05D009572 1.3e-20 102.8 56 87.5
CANSAT01G0287 Cannabis sativa HOM05D007605 ORTHO05D009572 1.7e-20 102.4 57 86.0
Migut.N03059 Erythranthe guttata HOM05D007605 ORTHO05D009572 1.7e-20 102.4 70 74.3
Cfa015674 Carpinus fangiana HOM05D007605 ORTHO05D009572 4.9e-20 100.9 55 85.5
Duzib212G0337 Durio zibethinus HOM05D007605 ORTHO05D009572 4.9e-20 100.9 70 71.4
SalBow6G4154 Salvia bowleyana HOM05D007605 ORTHO05D009572 6.4e-20 100.5 70 72.9
CSS0027032 Camellia sinensis var. sinensis HOM05D007605 ORTHO05D009572 1.1e-19 99.8 57 84.2
CSS0028313 Camellia sinensis var. sinensis HOM05D007605 ORTHO05D009572 1.1e-19 99.8 57 84.2
Sc13g0006890 Simmondsia chinensis HOM05D007605 ORTHO05D009572 1.1e-19 99.8 57 82.5
Haze_00851 Corylus avellana HOM05D007605 ORTHO05D009572 2.4e-19 98.6 55 83.6
Gohir.A10G144600 Gossypium hirsutum HOM05D007605 ORTHO05D009572 2.4e-19 98.6 57 80.7
FAN05G0946 Fragaria x ananassa HOM05D007605 ORTHO05D009572 3.2e-19 98.2 57 86.0
FAN05G3507 Fragaria x ananassa HOM05D007605 ORTHO05D009572 3.2e-19 98.2 57 86.0
Atru.chr4.1455 Acer truncatum HOM05D007605 ORTHO05D009572 4.1e-19 97.8 57 80.7
COL.COLO4_38114 Corchorus olitorius HOM05D007605 ORTHO05D009572 4.1e-19 97.8 57 80.7
Nn1g09550 Nelumbo nucifera HOM05D007605 ORTHO05D009572 4.1e-19 97.8 70 71.4
RcHm_v2.0_Chr4g0405791 Rosa chinensis HOM05D007605 ORTHO05D009572 4.1e-19 97.8 57 86.0
SGA_v2.0_scaffold25G11005 Striga asiatica HOM05D000384 ORTHO05D009572 4.1e-19 97.8 70 71.4
Thecc.04G164300 Theobroma cacao HOM05D007605 ORTHO05D009572 5.4e-19 97.4 57 80.7
Ciclev10023247m.g Citrus clementina HOM05D007605 ORTHO05D009572 9.2e-19 96.7 57 77.2
DCAR_030842 Daucus carota HOM05D007605 ORTHO05D009572 9.2e-19 96.7 63 76.2
FvH4_6g21131 Fragaria vesca HOM05D007605 ORTHO05D009572 9.2e-19 96.7 57 84.2
FAN14G0446 Fragaria x ananassa HOM05D007605 ORTHO05D009572 9.2e-19 96.7 57 84.2
Nitab4.5_0004700g0030 Nicotiana tabacum HOM05D001130 ORTHO05D001052 9.2e-19 96.7 70 68.6
Rhsim09G0008600 Rhododendron simsii HOM05D007605 ORTHO05D009572 9.2e-19 96.7 58 81.0
THA.LOC104802329 Tarenaya hassleriana HOM05D007605 ORTHO05D009572 1.2e-18 96.3 55 83.6
MD11G1225700 Malus domestica HOM05D007605 ORTHO05D009572 1.6e-18 95.9 57 82.5
RcHm_v2.0_Chr7g0232231 Rosa chinensis HOM05D007605 ORTHO05D009572 1.6e-18 95.9 57 84.2
MD03G1210800 Malus domestica HOM05D007605 ORTHO05D009572 2.7e-18 95.1 57 80.7
Nitab4.5_0007474g0060 Nicotiana tabacum HOM05D007605 ORTHO05D009572 2.7e-18 95.1 58 74.1
Sopen06g018580 Solanum pennellii HOM05D007605 ORTHO05D009572 3.5e-18 94.7 58 75.9
Eucgr.H04449 Eucalyptus grandis HOM05D007605 ORTHO05D009572 4.6e-18 94.4 55 81.8
Atru.chr12.2308 Acer truncatum HOM05D007605 ORTHO05D009572 6.0e-18 94.0 57 80.7
Cpa.g.sc9.378 Carica papaya HOM05D007605 ORTHO05D009572 6.0e-18 94.0 55 83.6
Prupe.4G204500 Prunus persica HOM05D007605 ORTHO05D009572 6.0e-18 94.0 57 78.9
PGSC0003DMG400016297 Solanum tuberosum HOM05D007605 ORTHO05D009572 6.0e-18 94.0 58 75.9
Peaxi162Scf00579g00018 Petunia axillaris HOM05D007605 ORTHO05D009572 7.8e-18 93.6 58 74.1
PGR142G0642 Punica granatum HOM05D007605 ORTHO05D009572 7.8e-18 93.6 54 83.3
Sed0018718 Sechium edule HOM05D007605 ORTHO05D009572 7.8e-18 93.6 55 81.8
arahy.Tifrunner.gnm1.ann1.FBG7WK Arachis hypogaea HOM05D007605 ORTHO05D009572 1.0e-17 93.2 58 75.9
Aa31LG1G25490 Aethionema arabicum HOM05D005323 ORTHO05D006820 1.7e-17 92.4 55 80.0
ECA248G2718 Erigeron canadensis HOM05D007605 ORTHO05D009572 1.7e-17 92.4 52 84.6
TPR.G18242 Trifolium pratense HOM05D007605 ORTHO05D009572 1.7e-17 92.4 55 81.8
arahy.Tifrunner.gnm1.ann1.MPL0H7 Arachis hypogaea HOM05D007605 ORTHO05D009572 2.3e-17 92.0 90 56.7
Carub.0004s2631 Capsella rubella HOM05D007605 ORTHO05D009572 3.0e-17 91.7 55 80.0
MELO3C011854.2 Cucumis melo HOM05D007605 ORTHO05D009572 3.0e-17 91.7 55 78.2
Gohir.D10G122400 Gossypium hirsutum HOM05D007605 ORTHO05D009572 3.0e-17 91.7 58 77.6
Gorai.011G134700 Gossypium raimondii HOM05D007605 ORTHO05D009572 3.0e-17 91.7 58 77.6
BcaC02g12364 Brassica carinata HOM05D005323 ORTHO05D006820 3.9e-17 91.3 56 75.0
C04p04730 Brassica napus HOM05D005323 ORTHO05D006820 3.9e-17 91.3 56 75.0
BolC4t22103H Brassica oleracea HOM05D005323 ORTHO05D006820 3.9e-17 91.3 56 75.0
MBI07_g11492_MAGBIO Magnolia biondii HOM05D007605 ORTHO05D009572 3.9e-17 91.3 55 81.8
Medtr7g091060 Medicago truncatula HOM05D007605 ORTHO05D009572 3.9e-17 91.3 55 80.0
AL4G42650 Arabidopsis lyrata HOM05D007605 ORTHO05D009572 5.1e-17 90.9 55 80.0
Ca_08431_v3 Cicer arietinum L. HOM05D007605 ORTHO05D009572 5.1e-17 90.9 55 80.0
Ca_14651_v3 Cicer arietinum L. HOM05D007605 ORTHO05D009572 5.1e-17 90.9 55 80.0
Aqoxy4G02871 Aquilegia oxysepala HOM05D007605 ORTHO05D009572 6.6e-17 90.5 52 82.7
PSO573G0041 Papaver somniferum HOM05D007605 ORTHO05D009572 8.6e-17 90.1 55 80.0
Potri.019G096500 Populus trichocarpa HOM05D007605 ORTHO05D009572 8.6e-17 90.1 52 80.8
Potri.019G096700 Populus trichocarpa HOM05D007605 ORTHO05D009572 8.6e-17 90.1 52 80.8
AT2G43780 Arabidopsis thaliana HOM05D007605 ORTHO05D009572 1.1e-16 89.7 55 80.0
CiPaw.01G168900 Carya illinoinensis HOM05D007605 ORTHO05D009572 1.1e-16 89.7 55 78.2
Sabra13G0106700 Salix brachista HOM05D007605 ORTHO05D009572 1.1e-16 89.7 55 83.6
Sp4g25850 Schrenkiella parvula HOM05D007605 ORTHO05D009572 1.1e-16 89.7 55 76.4
TWI63G1406 Tripterygium wilfordii HOM05D007605 ORTHO05D009572 1.1e-16 89.7 55 80.0
Glyma.08G364500 Glycine max HOM05D007605 ORTHO05D009572 1.5e-16 89.4 59 71.2
Lalb_Chr04g0257371 Lupinus albus HOM05D007605 ORTHO05D009572 1.5e-16 89.4 55 80.0
Os05g0103800 Oryza sativa ssp. japonica HOM05D007605 ORTHO05D009572 1.5e-16 89.4 52 78.8
BcaB01g03362 Brassica carinata HOM05D007605 ORTHO05D009572 1.9e-16 89.0 55 76.4
Lsat_1_v5_gn_1_21060 Lactuca sativa HOM05D007605 ORTHO05D009572 2.5e-16 88.6 52 78.8
Lj6g0006319 Lotus japonicus HOM05D007605 ORTHO05D009572 2.5e-16 88.6 55 76.4
Lj6g0016727 Lotus japonicus HOM05D007605 ORTHO05D009572 2.5e-16 88.6 55 76.4
Manes.05G136900 Manihot esculenta HOM05D007605 ORTHO05D009572 2.5e-16 88.6 55 80.0
Manes.08G010900 Manihot esculenta HOM05D007605 ORTHO05D009572 2.5e-16 88.6 55 80.0
VMungo1383G0010 Vigna mungo HOM05D003647 ORTHO05D004182 2.5e-16 88.6 55 76.4
Thhalv10001711m.g Eutrema salsugineum HOM05D007605 ORTHO05D009572 3.3e-16 88.2 55 76.4
Sabra19G0108500 Salix brachista HOM05D000005 ORTHO05D000012 3.3e-16 88.2 52 78.8
BcaC01g05214 Brassica carinata HOM05D007605 ORTHO05D009572 4.3e-16 87.8 55 74.5
C03p29150 Brassica napus HOM05D007605 ORTHO05D009572 4.3e-16 87.8 55 74.5
BolC3t15267H Brassica oleracea HOM05D007605 ORTHO05D009572 4.3e-16 87.8 55 74.5
CARHR138960 Cardamine hirsuta HOM05D007605 ORTHO05D009572 4.3e-16 87.8 55 78.2
Glyma.18G297600 Glycine max HOM05D007605 ORTHO05D009572 4.3e-16 87.8 55 76.4
Lj1g0002800 Lotus japonicus HOM05D007605 ORTHO05D009572 4.3e-16 87.8 55 76.4
Lj1g0021920 Lotus japonicus HOM05D007605 ORTHO05D009572 4.3e-16 87.8 55 76.4
Psat3g074320 Pisum sativum HOM05D007605 ORTHO05D009572 4.3e-16 87.8 55 78.2
A05p03980 Brassica napus HOM05D005323 ORTHO05D006820 5.6e-16 87.4 55 72.7
Os12g0611700 Oryza sativa ssp. japonica HOM05D007605 ORTHO05D009572 5.6e-16 87.4 52 76.9
Phvul.008G005000 Phaseolus vulgaris HOM05D007605 ORTHO05D009572 5.6e-16 87.4 55 76.4
ATR0743G065 Amborella trichopoda HOM05D007605 ORTHO05D009572 7.3e-16 87.0 54 75.9
BcaB02g08902 Brassica carinata HOM05D005323 ORTHO05D006820 9.5e-16 86.7 55 74.5
BcaB05g23281 Brassica carinata HOM05D007605 ORTHO05D009572 9.5e-16 86.7 55 72.7
A03p24460 Brassica napus HOM05D007605 ORTHO05D009572 9.5e-16 86.7 55 74.5
BraA03t11655Z Brassica rapa HOM05D007605 ORTHO05D009572 9.5e-16 86.7 55 74.5
BraA05t19386Z Brassica rapa HOM05D005323 ORTHO05D006820 1.2e-15 86.3 55 72.7
Glyma.19G073500 Glycine max HOM05D007605 ORTHO05D009572 2.1e-15 85.5 57 70.2
ClCG11G013540 Citrullus lanatus HOM05D007605 ORTHO05D009572 4.0e-14 81.3 46 82.6
Lsat_1_v5_gn_1_74540 Lactuca sativa HOM05D007605 ORTHO05D009572 1.2e-13 79.7 56 66.1
QL10p056550 Quercus lobata HOM05D007605 ORTHO05D009572 1.5e-13 79.3 52 73.1
CsaV3_5G030160 Cucumis sativus L. HOM05D007605 ORTHO05D009572 2.6e-13 78.6 42 85.7
Lj6C218G0 Lonicera japonica HOM05D000384 ORTHO05D000468 7.6e-13 77.0 42 83.3
Glyma.19G030600 Glycine max HOM05D007605 ORTHO05D009572 3.8e-12 74.7 59 64.4
GSVIVG01038176001 Vitis vinifera HOM05D007605 ORTHO05D009572 4.9e-12 74.3 52 69.2
vmacro23387 Vaccinium macrocarpon HOM05D007605 ORTHO05D009572 1.9e-11 72.4 38 86.8
Glyma.17G205632 Glycine max HOM05D007605 ORTHO05D009572 7.1e-11 70.5 45 71.1
BcaC05g29066 Brassica carinata HOM05D007605 ORTHO05D009572 3.3e-08 61.6 46 60.9
Mapoly0044s0040 Marchantia polymorpha HOM05D007605 ORTHO05D009572 3.3e-08 61.6 43 65.1
Pp3c9_12740 Physcomitrium patens HOM05D007605 ORTHO05D009572 4.3e-08 61.2 43 67.4


User provided reference genes

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