Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.07g202760 Amaranthus hybridus HOM05D003319 ORTHO05D003739 2.4e-257 891.7 469 100.0
EL10Ac3g06093 Beta vulgaris HOM05D003319 ORTHO05D003739 2.3e-106 390.2 504 52.4
AUR62002401 Chenopodium quinoa HOM05D003319 ORTHO05D003739 2.3e-95 353.6 484 51.2
AUR62023790 Chenopodium quinoa HOM05D003319 ORTHO05D003739 2.9e-93 346.7 480 50.8
EL10Ac1g00993 Beta vulgaris HOM05D003319 ORTHO05D003739 1.2e-88 331.3 524 46.2
AUR62019092 Chenopodium quinoa HOM05D003319 ORTHO05D003739 7.6e-78 295.4 496 46.2
Hund04947 Selenicereus undatus HOM05D003319 ORTHO05D003739 4.0e-55 219.9 462 41.6
AUR62014349 Chenopodium quinoa HOM05D003319 ORTHO05D003739 1.1e-49 201.8 497 39.8
GSVIVG01009184001 Vitis vinifera HOM05D003319 ORTHO05D003739 1.1e-49 201.8 491 37.3
Sc26g0002970 Simmondsia chinensis HOM05D003319 ORTHO05D003739 6.9e-47 192.6 533 35.6
Dinv42609 Davidia involucrata HOM05D003319 ORTHO05D003739 1.1e-44 185.3 526 36.3
Lj4A737G58 Lonicera japonica HOM05D003319 ORTHO05D003739 5.5e-44 183.0 466 37.3
Manes.02G144600 Manihot esculenta HOM05D003319 ORTHO05D003739 9.3e-44 182.2 451 37.5
Manes.18G058300 Manihot esculenta HOM05D003319 ORTHO05D003739 3.5e-43 180.3 469 35.6
TAR376G1177 Trochodendron aralioides HOM05D003319 ORTHO05D003739 3.9e-42 176.8 521 34.4
Nn1g05581 Nelumbo nucifera HOM05D003319 ORTHO05D003739 5.1e-42 176.4 467 35.5
Potri.002G106500 Populus trichocarpa HOM05D003319 ORTHO05D003739 8.7e-42 175.6 479 36.1
TAR628G1108 Trochodendron aralioides HOM05D003319 ORTHO05D003739 1.1e-41 175.3 532 34.2
Ciclev10000622m.g Citrus clementina HOM05D003319 ORTHO05D003739 1.5e-41 174.9 483 35.6
CiPaw.07G165000 Carya illinoinensis HOM05D003319 ORTHO05D003739 3.3e-41 173.7 478 36.2
Prupe.1G532700 Prunus persica HOM05D003319 ORTHO05D003739 3.3e-41 173.7 459 35.9
CiPaw.08G055800 Carya illinoinensis HOM05D003319 ORTHO05D003739 8.2e-40 169.1 434 38.2
Cc10_g15920 Coffea canephora HOM05D003319 ORTHO05D003739 1.1e-39 168.7 481 34.1
Hma1.2p1_0010F.1_g006630 Hydrangea macrophylla HOM05D003319 ORTHO05D003739 1.8e-39 167.9 463 36.7
CANSAT35G1730 Cannabis sativa HOM05D003319 ORTHO05D003739 4.1e-39 166.8 475 35.8
Sabra02G0083800 Salix brachista HOM05D003319 ORTHO05D003739 4.1e-39 166.8 487 35.5
Atru.chr13.1006 Acer truncatum HOM05D003319 ORTHO05D003739 1.2e-38 165.2 539 33.4
Rhsim07G0212100 Rhododendron simsii HOM05D003319 ORTHO05D003739 1.2e-38 165.2 487 34.7
Eucgr.F02154 Eucalyptus grandis HOM05D003319 ORTHO05D003739 2.0e-38 164.5 491 33.6
TWI56G0998 Tripterygium wilfordii HOM05D003319 ORTHO05D003739 3.4e-38 163.7 465 34.4
Lsat_1_v5_gn_9_74001 Lactuca sativa HOM05D003319 ORTHO05D003739 5.8e-38 162.9 485 33.8
Sopen12g030000 Solanum pennellii HOM05D003319 ORTHO05D003739 2.2e-37 161.0 431 35.0
MSTRG.11807 Avicennia marina HOM05D003319 ORTHO05D003739 2.9e-37 160.6 509 31.0
Cfa009865 Carpinus fangiana HOM05D003319 ORTHO05D003739 2.9e-37 160.6 474 35.0
Solyc12g087970.2 Solanum lycopersicum HOM05D003319 ORTHO05D003739 2.9e-37 160.6 492 34.6
vmacro04648 Vaccinium macrocarpon HOM05D003319 ORTHO05D003739 6.5e-37 159.5 487 34.1
Cfa013800 Carpinus fangiana HOM05D003319 ORTHO05D003739 4.2e-36 156.8 474 33.5
QL09p017848 Quercus lobata HOM05D003319 ORTHO05D003739 5.5e-36 156.4 553 31.1
Haze_22463 Corylus avellana HOM05D003319 ORTHO05D003739 7.2e-36 156.0 440 36.6
Sed0024254 Sechium edule HOM05D003319 ORTHO05D003739 2.7e-35 154.1 436 34.9
CAN.G806.11 Capsicum annuum HOM05D003319 ORTHO05D003739 7.9e-35 152.5 442 33.0
TWI36G0459 Tripterygium wilfordii HOM05D003319 ORTHO05D003739 3.0e-34 150.6 451 34.4
CiPaw.14G112200 Carya illinoinensis HOM05D003319 ORTHO05D003739 5.1e-34 149.8 461 34.1
ClCG11G014590 Citrullus lanatus HOM05D003319 ORTHO05D003739 6.7e-34 149.4 438 35.4
Thecc.08G071400 Theobroma cacao HOM05D003319 ORTHO05D003739 8.7e-34 149.1 572 33.0
MD08G1198900 Malus domestica HOM05D003319 ORTHO05D003739 1.1e-33 148.7 448 34.4
ECA232G2539 Erigeron canadensis HOM05D001083 ORTHO05D001637 3.3e-33 147.1 436 34.9
Duzib093G0230 Durio zibethinus HOM05D003319 ORTHO05D003739 5.7e-33 146.4 322 37.3
Gohir.A01G126500 Gossypium hirsutum HOM05D003319 ORTHO05D003739 5.7e-33 146.4 511 31.5
HanXRQChr15g0484821 Helianthus annuus HOM05D003319 ORTHO05D003739 7.4e-33 146.0 384 33.6
Nitab4.5_0000354g0150 Nicotiana tabacum HOM05D003319 ORTHO05D003739 7.4e-33 146.0 563 30.9
SGA_v2.0_scaffold193G40665 Striga asiatica HOM05D003319 ORTHO05D003739 9.7e-33 145.6 498 31.7
CsaV3_2G030210 Cucumis sativus L. HOM05D003319 ORTHO05D003739 2.2e-32 144.4 450 33.3
Haze_23237 Corylus avellana HOM05D003319 ORTHO05D003739 2.8e-32 144.1 390 36.2
Lsat_1_v5_gn_6_104940 Lactuca sativa HOM05D003319 ORTHO05D003739 2.8e-32 144.1 430 32.8
Gohir.D01G114100 Gossypium hirsutum HOM05D003319 ORTHO05D003739 4.8e-32 143.3 583 30.0
CSS0018207 Camellia sinensis var. sinensis HOM05D003319 ORTHO05D003739 1.1e-31 142.1 210 44.3
Nitab4.5_0001607g0150 Nicotiana tabacum HOM05D003319 ORTHO05D003739 3.1e-31 140.6 552 31.2
PSO210G3859 Papaver somniferum HOM05D003319 ORTHO05D003739 3.1e-31 140.6 381 34.6
CDE11G0791 Ceratophyllum demersum HOM05D003319 ORTHO05D003739 4.1e-31 140.2 377 33.7
ClCG08G011640 Citrullus lanatus HOM05D003319 ORTHO05D003739 4.1e-31 140.2 517 31.3
ATR0582G130 Amborella trichopoda HOM05D003319 ORTHO05D003739 5.3e-31 139.8 527 30.4
CsaV3_3G048000 Cucumis sativus L. HOM05D003319 ORTHO05D003739 5.3e-31 139.8 372 36.0
Migut.A00432 Erythranthe guttata HOM05D003319 ORTHO05D003739 5.3e-31 139.8 524 31.3
ECA246G1786 Erigeron canadensis HOM05D003319 ORTHO05D003739 6.9e-31 139.4 399 33.6
Gorai.002G139000 Gossypium raimondii HOM05D003319 ORTHO05D003739 1.2e-30 138.7 587 30.0
PSO170G3999 Papaver somniferum HOM05D003319 ORTHO05D003739 1.2e-30 138.7 381 34.4
Sed0025417 Sechium edule HOM05D003319 ORTHO05D003739 1.2e-30 138.7 536 29.9
Peaxi162Scf00454g00323 Petunia axillaris HOM05D003319 ORTHO05D003739 1.5e-30 138.3 495 31.7
Sabra05G0119500 Salix brachista HOM05D003319 ORTHO05D003739 4.5e-30 136.7 240 40.0
QL01p017023 Quercus lobata HOM05D003319 ORTHO05D003739 5.9e-30 136.3 553 31.1
MD15G1386000 Malus domestica HOM05D003319 ORTHO05D003739 1.3e-29 135.2 237 38.8
FAN13G1335 Fragaria x ananassa HOM05D003319 ORTHO05D003739 1.7e-29 134.8 466 32.0
Oeu018565.2 Olea europaea HOM05D003319 ORTHO05D003739 1.7e-29 134.8 457 33.5
PGR031G0455 Punica granatum HOM05D003319 ORTHO05D003739 2.2e-29 134.4 528 32.4
Solyc04g076360.4 Solanum lycopersicum HOM05D003319 ORTHO05D003739 2.9e-29 134.0 481 31.8
MELO3C003521.2 Cucumis melo HOM05D003319 ORTHO05D003739 8.5e-29 132.5 530 30.9
RcHm_v2.0_Chr7g0235501 Rosa chinensis HOM05D003319 ORTHO05D003739 8.5e-29 132.5 470 32.1
Actinidia19629 Actinidia chinensis HOM05D003319 ORTHO05D003739 1.4e-28 131.7 312 36.2
HanXRQChr05g0163341 Helianthus annuus HOM05D003319 ORTHO05D003739 1.4e-28 131.7 400 32.8
PGR042G0823 Punica granatum HOM05D003319 ORTHO05D003739 1.4e-28 131.7 465 33.1
THA.LOC104816794 Tarenaya hassleriana HOM05D003319 ORTHO05D003739 1.9e-28 131.3 373 35.7
MELO3C011083.2 Cucumis melo HOM05D003319 ORTHO05D003739 2.5e-28 131.0 574 28.9
FAN04G1055 Fragaria x ananassa HOM05D003319 ORTHO05D003739 2.5e-28 131.0 535 29.3
DCAR_019315 Daucus carota HOM05D003319 ORTHO05D003739 4.2e-28 130.2 546 28.8
Aqoxy5G01378 Aquilegia oxysepala HOM05D003319 ORTHO05D003739 1.2e-27 128.6 422 33.2
MBI16_g19592_MAGBIO Magnolia biondii HOM05D003319 ORTHO05D003739 1.6e-27 128.3 457 31.7
Sp1g08300 Schrenkiella parvula HOM05D003319 ORTHO05D003739 6.1e-27 126.3 376 32.7
Glyma.04G095300 Glycine max HOM05D003319 ORTHO05D003739 7.9e-27 125.9 423 31.0
Nitab4.5_0000131g0210 Nicotiana tabacum HOM05D003319 ORTHO05D003739 7.9e-27 125.9 434 32.5
Nitab4.5_0005913g0020 Nicotiana tabacum HOM05D003319 ORTHO05D003739 1.4e-26 125.2 380 33.4
Cpa.g.sc21.26 Carica papaya HOM05D003319 ORTHO05D003739 1.8e-26 124.8 499 31.9
FvH4_5g34820 Fragaria vesca HOM05D003319 ORTHO05D003739 3.9e-26 123.6 472 31.1
Peaxi162Scf00160g01038 Petunia axillaris HOM05D003319 ORTHO05D003739 6.7e-26 122.9 399 33.8
Migut.F01437 Erythranthe guttata HOM05D003319 ORTHO05D003739 1.1e-25 122.1 381 31.8
HPP92_016140 Vanilla planifolia HOM05D003319 ORTHO05D003739 2.5e-25 120.9 462 32.5
CDE05G3064 Ceratophyllum demersum HOM05D003319 ORTHO05D003739 4.3e-25 120.2 481 30.4
AL1G20260 Arabidopsis lyrata HOM05D003319 ORTHO05D003739 1.7e-24 118.2 388 32.0
CAN.G475.23 Capsicum annuum HOM05D003319 ORTHO05D003739 1.7e-24 118.2 468 29.3
Sopen00g008100 Solanum pennellii HOM05D003319 ORTHO05D003739 4.8e-24 116.7 416 31.5
CARHR009680 Cardamine hirsuta HOM05D003319 ORTHO05D003739 1.4e-23 115.2 273 33.7
arahy.Tifrunner.gnm1.ann1.ET429J Arachis hypogaea HOM05D003319 ORTHO05D003739 1.8e-23 114.8 211 37.0
Lj1g0027025 Lotus japonicus HOM05D003319 ORTHO05D003739 2.4e-23 114.4 366 31.4
Duzib041G0541 Durio zibethinus HOM05D003319 ORTHO05D003739 4.1e-23 113.6 496 29.8
Lalb_Chr11g0064951 Lupinus albus HOM05D003319 ORTHO05D003739 4.1e-23 113.6 204 37.7
Lj4A717T32 Lonicera japonica HOM05D003319 ORTHO05D003739 5.3e-23 113.2 170 42.9
arahy.Tifrunner.gnm1.ann1.53Z6YZ Arachis hypogaea HOM05D003319 ORTHO05D003739 9.1e-23 112.5 388 30.9
FAN18G0012 Fragaria x ananassa HOM05D003319 ORTHO05D003739 9.1e-23 112.5 534 28.3
arahy.Tifrunner.gnm1.ann1.S3SE83 Arachis hypogaea HOM05D003319 ORTHO05D003739 1.2e-22 112.1 417 32.4
C05p07790 Brassica napus HOM05D003319 ORTHO05D003739 1.2e-22 112.1 393 31.6
AT1G09710 Arabidopsis thaliana HOM05D003319 ORTHO05D003739 4.5e-22 110.2 437 29.7
BolC5t29530H Brassica oleracea HOM05D003319 ORTHO05D003739 4.5e-22 110.2 402 31.3
arahy.Tifrunner.gnm1.ann1.J3DRUP Arachis hypogaea HOM05D003319 ORTHO05D003739 5.9e-22 109.8 413 32.7
LjContig00408g0021434 Lotus japonicus HOM05D003319 ORTHO05D003739 5.9e-22 109.8 133 44.4
COL.COLO4_35252 Corchorus olitorius HOM05D001049 ORTHO05D001986 1.7e-21 108.2 292 34.9
Dinv44863 Davidia involucrata HOM05D001049 ORTHO05D001986 1.7e-21 108.2 227 35.2
DCAR_012853 Daucus carota HOM05D003319 ORTHO05D003739 3.8e-21 107.1 162 42.0
Lalb_Chr23g0270031 Lupinus albus HOM05D003319 ORTHO05D003739 3.8e-21 107.1 465 30.1
PSO478G0048 Papaver somniferum HOM05D003319 ORTHO05D003739 3.8e-21 107.1 496 30.2
BolC9t55230H Brassica oleracea HOM05D003319 ORTHO05D003739 5.0e-21 106.7 397 30.2
BraA06t23850Z Brassica rapa HOM05D003319 ORTHO05D003739 5.0e-21 106.7 456 29.2
BcaC04g22121 Brassica carinata HOM05D003319 ORTHO05D003739 1.1e-20 105.5 370 31.6
C09p23120 Brassica napus HOM05D003319 ORTHO05D003739 1.1e-20 105.5 396 30.8
FAN08G0387 Fragaria x ananassa HOM05D003319 ORTHO05D003739 1.1e-20 105.5 567 26.8
SalBow4G2315 Salvia bowleyana HOM05D003319 ORTHO05D003739 1.1e-20 105.5 593 25.8
Phvul.009G036300 Phaseolus vulgaris HOM05D003319 ORTHO05D003739 1.4e-20 105.1 388 31.2
BcaB04g20193 Brassica carinata HOM05D003319 ORTHO05D003739 5.5e-20 103.2 391 30.7
TPR.G6339 Trifolium pratense HOM05D003319 ORTHO05D003739 9.4e-20 102.4 259 32.8
VMungo1309G1101 Vigna mungo HOM05D003319 ORTHO05D003739 9.4e-20 102.4 551 27.8
A06p06390 Brassica napus HOM05D003319 ORTHO05D003739 1.2e-19 102.1 446 29.4
unitig_32.g10947 Utricularia gibba HOM05D003319 ORTHO05D003739 1.2e-19 102.1 455 29.7
Lalb_Chr08g0242551 Lupinus albus HOM05D003319 ORTHO05D003739 1.6e-19 101.7 317 29.7
Sp2g05390 Schrenkiella parvula HOM05D003319 ORTHO05D003739 1.6e-19 101.7 377 31.8
Mapoly0014s0193 Marchantia polymorpha HOM05D003319 ORTHO05D003739 3.6e-19 100.5 109 47.7
Zm00001eb243450 Zea mays HOM05D003319 ORTHO05D003739 6.1e-19 99.8 391 31.2
Aa31LG1G5280 Aethionema arabicum HOM05D003319 ORTHO05D003739 7.9e-19 99.4 418 30.9
A01p28300 Brassica napus HOM05D003319 ORTHO05D003739 1.0e-18 99.0 390 30.8
BraA01t02959Z Brassica rapa HOM05D003319 ORTHO05D003739 1.0e-18 99.0 390 30.8
BraA09t37477Z Brassica rapa HOM05D003319 ORTHO05D003739 1.0e-18 99.0 424 29.2
PSO478G3694 Papaver somniferum HOM05D003319 ORTHO05D003739 1.0e-18 99.0 412 33.0
Medtr8g024690 Medicago truncatula HOM05D003319 ORTHO05D003739 1.4e-18 98.6 209 34.9
Hund17284 Selenicereus undatus HOM05D003319 ORTHO05D003739 1.8e-18 98.2 352 35.5
A09p18510 Brassica napus HOM05D003319 ORTHO05D003739 2.3e-18 97.8 423 29.8
BcaC09g49499 Brassica carinata HOM05D003319 ORTHO05D003739 3.9e-18 97.1 390 30.3
C01p35850 Brassica napus HOM05D003319 ORTHO05D003739 3.9e-18 97.1 390 30.3
BolC1t03546H Brassica oleracea HOM05D003319 ORTHO05D003739 3.9e-18 97.1 390 30.3
Glyma.02G214600 Glycine max HOM05D003319 ORTHO05D003739 5.1e-18 96.7 193 35.2
PGSC0003DMG400009342 Solanum tuberosum HOM05D003319 ORTHO05D003739 5.1e-18 96.7 514 28.2
PSO782G3079 Papaver somniferum HOM05D003319 ORTHO05D003739 1.1e-17 95.5 227 36.6
Psat5g049040 Pisum sativum HOM05D003319 ORTHO05D003739 1.1e-17 95.5 131 41.2
Ca_29526_v3 Cicer arietinum L. HOM05D003319 ORTHO05D003739 1.5e-17 95.1 199 34.2
AT1G58220 Arabidopsis thaliana HOM05D003319 ORTHO05D003739 2.6e-17 94.4 374 31.0
PSO478G2921 Papaver somniferum HOM05D003319 ORTHO05D003739 3.3e-17 94.0 470 28.3
Ca_23436_v3 Cicer arietinum L. HOM05D003319 ORTHO05D003739 4.4e-17 93.6 354 31.4
Medtr3g100180 Medicago truncatula HOM05D003319 ORTHO05D003739 4.4e-17 93.6 355 31.3
PSO782G3353 Papaver somniferum HOM05D003319 ORTHO05D003739 4.4e-17 93.6 390 30.5
SHI20381 Sapria himalayana HOM05D003319 ORTHO05D003739 4.4e-17 93.6 125 40.8
Aa31LG2G10920 Aethionema arabicum HOM05D003319 ORTHO05D003739 5.7e-17 93.2 380 30.5
Thhalv10024079m.g Eutrema salsugineum HOM05D003319 ORTHO05D003739 7.4e-17 92.8 378 31.2
PSO478G0452 Papaver somniferum HOM05D003319 ORTHO05D003739 7.4e-17 92.8 414 32.6
Phvul.008G182100 Phaseolus vulgaris HOM05D003319 ORTHO05D003739 9.7e-17 92.4 231 33.8
PSO478G0631 Papaver somniferum HOM05D003319 ORTHO05D003739 1.3e-16 92.0 114 46.5
CARHR053790 Cardamine hirsuta HOM05D003319 ORTHO05D003739 1.7e-16 91.7 375 30.1
Os02g0551400 Oryza sativa ssp. japonica HOM05D003319 ORTHO05D003739 2.8e-16 90.9 191 32.5
FAN12G3643 Fragaria x ananassa HOM05D003319 ORTHO05D003739 3.7e-16 90.5 75 62.7
VMungo0647G1715 Vigna mungo HOM05D003319 ORTHO05D003739 6.3e-16 89.7 184 35.9
Carub.0002s0638 Capsella rubella HOM05D003319 ORTHO05D003739 8.2e-16 89.4 381 30.2
CAN.G193.10 Capsicum annuum HOM05D003319 ORTHO05D003739 1.1e-15 89.0 270 31.5
FAN12G3747 Fragaria x ananassa HOM05D003319 ORTHO05D003739 1.4e-15 88.6 75 61.3
Psat2g065280 Pisum sativum HOM05D003319 ORTHO05D003739 4.1e-15 87.0 202 35.1
Actinidia19627 Actinidia chinensis HOM05D003319 ORTHO05D003739 7.0e-15 86.3 444 29.1
Prupe.1G532600 Prunus persica HOM05D003319 ORTHO05D003739 4.5e-14 83.6 402 30.1
Aqoxy5G01379 Aquilegia oxysepala HOM05D003319 ORTHO05D003739 5.9e-14 83.2 427 27.6
Zm00001eb181960 Zea mays HOM05D003319 ORTHO05D003739 5.9e-14 83.2 300 29.0
arahy.Tifrunner.gnm1.ann1.TQJ3R9 Arachis hypogaea HOM05D003319 ORTHO05D003739 1.3e-13 82.0 85 44.7
Carub.0001s0905 Capsella rubella HOM05D003319 ORTHO05D003739 6.5e-13 79.7 514 23.7
arahy.Tifrunner.gnm1.ann1.UL2XNL Arachis hypogaea HOM05D003319 ORTHO05D003739 7.2e-12 76.3 72 48.6
CBR_g9137 Chara braunii HOM05D000023 ORTHO05D000002 1.4e-10 72.0 166 31.3
FvH4_4g17970 Fragaria vesca HOM05D003319 ORTHO05D003739 9.7e-09 65.9 119 37.8
Psat6g236040 Pisum sativum HOM05D003319 ORTHO05D003739 4.8e-08 63.5 68 48.5
Sc15g0002710 Simmondsia chinensis HOM05D003319 ORTHO05D003739 1.1e-07 62.4 61 45.9
MD15G1385800 Malus domestica HOM05D003319 ORTHO05D003739 4.5e-06 57.0 209 31.1


User provided reference genes

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