Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.07g202650 Amaranthus hybridus HOM05D001997 ORTHO05D005560 2.2e-68 262.3 143 100.0
AUR62026225 Chenopodium quinoa HOM05D001997 ORTHO05D005560 3.5e-50 201.8 142 79.6
EL10Ac3g06063 Beta vulgaris HOM05D001997 ORTHO05D005560 3.2e-48 195.3 145 77.2
AUR62026408 Chenopodium quinoa HOM05D001997 ORTHO05D005560 2.7e-47 192.2 126 82.5
Sc01g0006970 Simmondsia chinensis HOM05D001997 ORTHO05D005560 2.4e-43 179.1 144 69.4
Dinv02939 Davidia involucrata HOM05D001997 ORTHO05D005560 3.1e-43 178.7 117 79.5
Dinv33196 Davidia involucrata HOM05D001997 ORTHO05D005560 7.7e-42 174.1 116 79.3
Ah.13g073580 Amaranthus hybridus HOM05D000242 ORTHO05D005560 1.7e-41 172.9 119 79.0
Hma1.2p1_0855F.1_g228990 Hydrangea macrophylla HOM05D001997 ORTHO05D005560 6.5e-41 171.0 117 75.2
CiPaw.02G100900 Carya illinoinensis HOM05D001997 ORTHO05D005560 1.1e-40 170.2 106 81.1
Duzib268G1453 Durio zibethinus HOM05D001997 ORTHO05D005560 2.5e-40 169.1 110 77.3
Manes.04G036800 Manihot esculenta HOM05D001997 ORTHO05D005560 2.5e-40 169.1 110 77.3
QL10p053341 Quercus lobata HOM05D001997 ORTHO05D005560 2.5e-40 169.1 111 79.3
Gorai.005G124400 Gossypium raimondii HOM05D001997 ORTHO05D005560 4.2e-40 168.3 118 73.7
Gohir.D02G109200 Gossypium hirsutum HOM05D001997 ORTHO05D005560 5.5e-40 167.9 110 77.3
TWI15G0247 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 5.5e-40 167.9 111 76.6
Eucgr.A00017 Eucalyptus grandis HOM05D001997 ORTHO05D005560 7.2e-40 167.5 112 76.8
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 9.5e-40 167.2 109 78.0
MELO3C002757.2 Cucumis melo HOM05D001997 ORTHO05D005560 1.2e-39 166.8 98 83.7
CsaV3_1G036760 Cucumis sativus L. HOM05D001997 ORTHO05D005560 1.2e-39 166.8 98 83.7
PGR004G0495 Punica granatum HOM05D001997 ORTHO05D005560 1.2e-39 166.8 110 76.4
QL10p054519 Quercus lobata HOM05D001997 ORTHO05D005560 1.2e-39 166.8 111 78.4
Rhsim02G0083500 Rhododendron simsii HOM05D001997 ORTHO05D005560 1.6e-39 166.4 116 76.7
TAR362G0574 Trochodendron aralioides HOM05D001997 ORTHO05D005560 1.6e-39 166.4 116 76.7
Potri.013G125200 Populus trichocarpa HOM05D001997 ORTHO05D005560 2.1e-39 166.0 106 77.4
Manes.11G130400 Manihot esculenta HOM05D001997 ORTHO05D005560 2.8e-39 165.6 114 74.6
Manes.16G067100 Manihot esculenta HOM05D001997 ORTHO05D005560 2.8e-39 165.6 110 76.4
Gohir.A02G091400 Gossypium hirsutum HOM05D001997 ORTHO05D005560 3.6e-39 165.2 109 77.1
TWI63G1293 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 3.6e-39 165.2 116 75.0
LjContig00312_ERROPOS870357g0002022 Lotus japonicus HOM05D001997 ORTHO05D005560 4.7e-39 164.9 116 75.0
TPR.G15125 Trifolium pratense HOM05D001997 ORTHO05D005560 4.7e-39 164.9 109 76.1
Actinidia11445 Actinidia chinensis HOM05D001997 ORTHO05D005560 6.1e-39 164.5 114 75.4
CSS0006622 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 8.0e-39 164.1 118 72.9
VMungo1127G1119 Vigna mungo HOM05D001997 ORTHO05D005560 1.0e-38 163.7 114 75.4
Ciclev10022891m.g Citrus clementina HOM05D001997 ORTHO05D005560 1.4e-38 163.3 108 75.0
Aqoxy3G00613 Aquilegia oxysepala HOM05D001997 ORTHO05D005560 1.8e-38 162.9 114 75.4
QL04p073793 Quercus lobata HOM05D001997 ORTHO05D005560 1.8e-38 162.9 110 77.3
FAN13G1284 Fragaria x ananassa HOM05D001997 ORTHO05D005560 3.0e-38 162.2 96 84.4
MD15G1424200 Malus domestica HOM05D001997 ORTHO05D005560 3.0e-38 162.2 110 76.4
Medtr3g110098 Medicago truncatula HOM05D001997 ORTHO05D005560 3.0e-38 162.2 109 75.2
Glyma.09G232500 Glycine max HOM05D001997 ORTHO05D005560 4.0e-38 161.8 114 75.4
CSS0005460 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 5.2e-38 161.4 117 73.5
CSS0042570 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 5.2e-38 161.4 117 73.5
ClCG03G006590 Citrullus lanatus HOM05D001997 ORTHO05D005560 5.2e-38 161.4 98 80.6
Psat2g000880 Pisum sativum HOM05D001997 ORTHO05D005560 5.2e-38 161.4 110 77.3
Phvul.011G004600 Phaseolus vulgaris HOM05D001997 ORTHO05D005560 6.8e-38 161.0 114 75.4
RcHm_v2.0_Chr7g0210361 Rosa chinensis HOM05D001997 ORTHO05D005560 6.8e-38 161.0 95 84.2
FvH4_5g22590 Fragaria vesca HOM05D001997 ORTHO05D005560 8.9e-38 160.6 95 84.2
FAN04G0119 Fragaria x ananassa HOM05D001997 ORTHO05D005560 8.9e-38 160.6 95 84.2
FAN08G3153 Fragaria x ananassa HOM05D001997 ORTHO05D005560 8.9e-38 160.6 95 84.2
FAN18G2915 Fragaria x ananassa HOM05D001997 ORTHO05D005560 8.9e-38 160.6 95 84.2
Oeu032138.1 Olea europaea HOM05D001997 ORTHO05D005560 1.2e-37 160.2 116 73.3
arahy.Tifrunner.gnm1.ann1.U4TVD9 Arachis hypogaea HOM05D001997 ORTHO05D005560 1.5e-37 159.8 110 77.3
Thecc.04G168000 Theobroma cacao HOM05D001997 ORTHO05D005560 1.5e-37 159.8 110 74.5
MSTRG.22024 Avicennia marina HOM05D001997 ORTHO05D005560 2.0e-37 159.5 113 77.0
Lalb_Chr02g0159681 Lupinus albus HOM05D001997 ORTHO05D005560 2.0e-37 159.5 109 77.1
unitig_27.g24921 Utricularia gibba HOM05D001997 ORTHO05D005560 2.0e-37 159.5 113 72.6
Prupe.1G570200 Prunus persica HOM05D001997 ORTHO05D005560 3.4e-37 158.7 110 73.6
Actinidia27107 Actinidia chinensis HOM05D001997 ORTHO05D005560 5.7e-37 157.9 114 71.9
Sed0015466 Sechium edule HOM05D001997 ORTHO05D005560 7.5e-37 157.5 98 76.5
AL4G42460 Arabidopsis lyrata HOM05D001997 ORTHO05D005560 9.8e-37 157.1 112 69.6
arahy.Tifrunner.gnm1.ann1.HCPJ2X Arachis hypogaea HOM05D001997 ORTHO05D005560 1.3e-36 156.8 110 75.5
Carub.0004s2617 Capsella rubella HOM05D001997 ORTHO05D005560 1.3e-36 156.8 112 69.6
arahy.Tifrunner.gnm1.ann1.NB68NZ Arachis hypogaea HOM05D001997 ORTHO05D005560 1.7e-36 156.4 110 75.5
CiPaw.01G171400 Carya illinoinensis HOM05D001997 ORTHO05D005560 1.7e-36 156.4 106 75.5
SalBow2G2973 Salvia bowleyana HOM05D001997 ORTHO05D005560 1.7e-36 156.4 111 73.0
Cc10_g09020 Coffea canephora HOM05D001997 ORTHO05D005560 4.9e-36 154.8 123 67.5
MD08G1231600 Malus domestica HOM05D001997 ORTHO05D005560 4.9e-36 154.8 110 72.7
Migut.N03073 Erythranthe guttata HOM05D001997 ORTHO05D005560 6.3e-36 154.5 116 69.0
CAN.G103.22 Capsicum annuum HOM05D001997 ORTHO05D005560 8.3e-36 154.1 118 69.5
Nitab4.5_0001586g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 1.1e-35 153.7 117 70.1
Nitab4.5_0004056g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 1.1e-35 153.7 117 70.1
BcaB02g08911 Brassica carinata HOM05D001997 ORTHO05D005560 1.4e-35 153.3 115 67.0
BcaC01g05223 Brassica carinata HOM05D001997 ORTHO05D005560 1.4e-35 153.3 112 68.8
A04p32920 Brassica napus HOM05D001997 ORTHO05D005560 1.4e-35 153.3 98 75.5
C03p29060 Brassica napus HOM05D001997 ORTHO05D005560 1.4e-35 153.3 112 68.8
BolC3t15260H Brassica oleracea HOM05D001997 ORTHO05D005560 1.4e-35 153.3 112 68.8
Sp4g25740 Schrenkiella parvula HOM05D001997 ORTHO05D005560 1.4e-35 153.3 107 70.1
Solyc06g053385.2 Solanum lycopersicum HOM05D001997 ORTHO05D005560 1.4e-35 153.3 117 69.2
Sopen06g018440 Solanum pennellii HOM05D001997 ORTHO05D005560 1.4e-35 153.3 117 69.2
CANSAT56G1366 Cannabis sativa HOM05D001997 ORTHO05D005560 1.8e-35 152.9 98 76.5
PGSC0003DMG400016301 Solanum tuberosum HOM05D001997 ORTHO05D005560 1.8e-35 152.9 117 69.2
BcaB01g03370 Brassica carinata HOM05D001997 ORTHO05D005560 2.4e-35 152.5 105 71.4
BcaB06g29333 Brassica carinata HOM05D001997 ORTHO05D005560 2.4e-35 152.5 113 69.0
BraA03t11647Z Brassica rapa HOM05D001997 ORTHO05D005560 2.4e-35 152.5 98 75.5
CARHR138820 Cardamine hirsuta HOM05D001997 ORTHO05D005560 2.4e-35 152.5 95 77.9
THA.LOC104802323 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 2.4e-35 152.5 116 67.2
BcaC02g12374 Brassica carinata HOM05D001997 ORTHO05D005560 3.1e-35 152.1 115 66.1
A03p24380 Brassica napus HOM05D001997 ORTHO05D005560 3.1e-35 152.1 98 74.5
C04p04630 Brassica napus HOM05D001997 ORTHO05D005560 3.1e-35 152.1 115 66.1
BolC4t22094H Brassica oleracea HOM05D001997 ORTHO05D005560 3.1e-35 152.1 115 66.1
Atru.chr4.1389 Acer truncatum HOM05D001997 ORTHO05D005560 4.1e-35 151.8 111 71.2
Glyma.12G004000 Glycine max HOM05D001997 ORTHO05D005560 4.1e-35 151.8 101 79.2
Aa31LG1G25360 Aethionema arabicum HOM05D001997 ORTHO05D005560 5.4e-35 151.4 107 70.1
CANSAT56G3121 Cannabis sativa HOM05D001997 ORTHO05D005560 5.4e-35 151.4 97 76.3
Cpa.g.sc9.355 Carica papaya HOM05D001997 ORTHO05D005560 7.0e-35 151.0 105 71.4
A05p03900 Brassica napus HOM05D001997 ORTHO05D005560 9.2e-35 150.6 115 66.1
BraA05t19377Z Brassica rapa HOM05D001997 ORTHO05D005560 9.2e-35 150.6 115 66.1
Thhalv10001685m.g Eutrema salsugineum HOM05D001997 ORTHO05D005560 9.2e-35 150.6 107 68.2
Migut.M00095 Erythranthe guttata HOM05D001997 ORTHO05D005560 1.2e-34 150.2 116 68.1
Nn1g09687 Nelumbo nucifera HOM05D001997 ORTHO05D005560 1.6e-34 149.8 133 63.9
Peaxi162Scf00180g00117 Petunia axillaris HOM05D001997 ORTHO05D005560 1.6e-34 149.8 117 68.4
BraA04t18752Z Brassica rapa HOM05D001997 ORTHO05D005560 2.7e-34 149.1 116 67.2
Lj3g0018936 Lotus japonicus HOM05D001997 ORTHO05D005560 3.5e-34 148.7 117 69.2
SGA_v2.0_scaffold25G10995 Striga asiatica HOM05D000987 ORTHO05D000831 4.5e-34 148.3 113 69.9
FAN18G1136 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.0e-33 147.1 85 85.9
HanXRQChr14g0432491 Helianthus annuus HOM05D001997 ORTHO05D005560 2.9e-33 145.6 108 70.4
HPP92_004665 Vanilla planifolia HOM05D001997 ORTHO05D005560 5.0e-33 144.8 107 67.3
CSS0004625 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 1.1e-32 143.7 115 65.2
GSVIVG01038131001 Vitis vinifera HOM05D001997 ORTHO05D005560 1.1e-32 143.7 105 73.3
Lsat_1_v5_gn_3_138061 Lactuca sativa HOM05D001997 ORTHO05D005560 7.3e-32 141.0 91 78.0
THA.LOC104819704 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 9.5e-32 140.6 108 65.7
Os04g0623700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D005560 1.2e-31 140.2 99 70.7
PSO675G0853 Papaver somniferum HOM05D001997 ORTHO05D005560 2.8e-31 139.0 118 66.9
PSO017G7267 Papaver somniferum HOM05D001997 ORTHO05D005560 8.0e-31 137.5 118 66.1
Zm00001eb070260 Zea mays HOM05D001997 ORTHO05D005560 2.3e-30 136.0 120 61.7
MBI08_g25560_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D005560 4.0e-30 135.2 107 65.4
ATR0075G039 Amborella trichopoda HOM05D001997 ORTHO05D005560 1.2e-29 133.7 113 62.8
DCAR_003034 Daucus carota HOM05D001997 ORTHO05D005560 7.5e-29 131.0 107 67.3
C04p70600 Brassica napus HOM05D001997 ORTHO05D005560 1.7e-28 129.8 105 63.8
AT2G43640 Arabidopsis thaliana HOM05D001997 ORTHO05D005560 1.8e-27 126.3 112 58.9
Atru.chr12.1238 Acer truncatum HOM05D001997 ORTHO05D005560 2.7e-26 122.5 98 64.3
Hund12390 Selenicereus undatus HOM05D001997 ORTHO05D005560 6.0e-26 121.3 89 75.3
Sc18g0007150 Simmondsia chinensis HOM05D001997 ORTHO05D005560 3.9e-25 118.6 91 68.1
TAR633G1661 Trochodendron aralioides HOM05D001997 ORTHO05D005560 3.9e-25 118.6 87 71.3
arahy.Tifrunner.gnm1.ann1.B0USY3 Arachis hypogaea HOM05D001997 ORTHO05D005560 6.6e-25 117.9 84 75.0
BcaC02g07159 Brassica carinata HOM05D001997 ORTHO05D005560 6.2e-23 111.3 72 73.6
BolC4t28562H Brassica oleracea HOM05D001997 ORTHO05D005560 6.2e-23 111.3 72 73.6
Mapoly0092s0041 Marchantia polymorpha HOM05D001997 ORTHO05D005560 6.8e-22 107.8 97 57.7
Oeu007674.1 Olea europaea HOM05D001997 ORTHO05D005560 4.9e-20 101.7 62 82.3
Pp3c22_3390 Physcomitrium patens HOM05D001997 ORTHO05D005560 6.4e-20 101.3 128 48.4
CBR_g30248 Chara braunii HOM05D001997 ORTHO05D005560 9.2e-19 97.4 93 54.8
MSTRG.24567 Avicennia marina HOM05D001997 ORTHO05D005560 1.2e-18 97.1 65 72.3
arahy.Tifrunner.gnm1.ann1.9S24RV Arachis hypogaea HOM05D001997 ORTHO05D005560 1.7e-17 93.2 79 63.3
CDE07G0374 Ceratophyllum demersum HOM05D001997 ORTHO05D005560 2.3e-17 92.8 59 71.2
Cc10_g09000 Coffea canephora HOM05D001997 ORTHO05D005560 3.6e-15 85.5 55 76.4
arahy.Tifrunner.gnm1.ann1.IP5VZQ Arachis hypogaea HOM05D001997 ORTHO05D005560 1.4e-14 83.6 69 63.8
AagrBONN_evm.TU.Sc2ySwM_228.2619 Anthoceros agrestis HOM05D001997 ORTHO05D005560 1.8e-14 83.2 86 51.2
arahy.Tifrunner.gnm1.ann1.F176HW Arachis hypogaea HOM05D001997 ORTHO05D005560 5.2e-14 81.6 80 56.2
Psat6g024000 Pisum sativum HOM05D001997 ORTHO05D005560 7.5e-13 77.8 110 50.0
Hund03190 Selenicereus undatus HOM05D000031 ORTHO05D000030 1.7e-12 76.6 84 51.2
arahy.Tifrunner.gnm1.ann1.TRD1UF Arachis hypogaea HOM05D001997 ORTHO05D005560 2.9e-12 75.9 83 54.2
EL10Ac5g10857 Beta vulgaris HOM05D001714 ORTHO05D001932 8.3e-12 74.3 55 78.2
CARHR119270 Cardamine hirsuta HOM05D001997 ORTHO05D005560 1.1e-11 73.9 51 66.7
MCO03G443 Micromonas commoda HOM05D001997 ORTHO05D005560 1.9e-11 73.2 109 44.0
Cre01.g031200 Chlamydomonas reinhardtii HOM05D001997 ORTHO05D005560 3.2e-11 72.4 98 42.9
CAN.G136.16 Capsicum annuum HOM05D001997 ORTHO05D005560 4.1e-11 72.0 53 66.0
arahy.Tifrunner.gnm1.ann1.E4AJF3 Arachis hypogaea HOM05D001997 ORTHO05D005560 2.7e-10 69.3 63 58.7
PRCOL_00005629 Prasinoderma coloniale HOM05D001997 ORTHO05D005560 1.3e-09 67.0 114 36.8
EL10Ac1g01241 Beta vulgaris HOM05D001714 ORTHO05D005560 2.3e-09 66.2 109 45.0
EL10Ac7g17594 Beta vulgaris HOM05D001714 ORTHO05D001932 3.0e-09 65.9 62 64.5
Hund12391 Selenicereus undatus HOM05D001997 ORTHO05D005560 1.1e-08 63.9 43 74.4
Glyma.10G156400 Glycine max HOM05D001997 ORTHO05D005560 2.5e-08 62.8 48 70.8
arahy.Tifrunner.gnm1.ann1.FLH3LF Arachis hypogaea HOM05D001997 ORTHO05D005560 1.2e-07 60.5 92 44.6
arahy.Tifrunner.gnm1.ann1.XW4Y8U Arachis hypogaea HOM05D001997 ORTHO05D005560 2.1e-07 59.7 74 48.6
arahy.Tifrunner.gnm1.ann1.PZN0G5 Arachis hypogaea HOM05D001997 ORTHO05D005560 1.4e-06 57.0 38 68.4
RcHm_v2.0_Chr7g0211671 Rosa chinensis HOM05D003587 ORTHO05D004139 4.0e-06 55.5 44 59.1


User provided reference genes

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