Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.07g202490 Amaranthus hybridus HOM05D001620 ORTHO05D005461 2.5e-42 175.6 135 100.0
AUR62023819 Chenopodium quinoa HOM05D001620 ORTHO05D005461 6.2e-33 144.4 135 87.4
EL10Ac3g06031 Beta vulgaris HOM05D001620 ORTHO05D005461 2.4e-32 142.5 137 86.1
AUR62002366 Chenopodium quinoa HOM05D001620 ORTHO05D005461 2.4e-32 142.5 135 85.9
Hund03188 Selenicereus undatus HOM05D001620 ORTHO05D005461 1.9e-29 132.9 134 55.2
Sc19g0002780 Simmondsia chinensis HOM05D001620 ORTHO05D005461 1.4e-24 116.7 131 50.4
Haze_01414 Corylus avellana HOM05D001620 ORTHO05D005461 4.9e-22 108.2 134 70.9
Haze_01411 Corylus avellana HOM05D001620 ORTHO05D005461 6.4e-22 107.8 130 49.2
Haze_12936 Corylus avellana HOM05D001620 ORTHO05D005461 2.4e-21 105.9 129 48.8
Cfa015222 Carpinus fangiana HOM05D001620 ORTHO05D005461 4.2e-21 105.1 131 76.3
Dinv44168 Davidia involucrata HOM05D001620 ORTHO05D005461 1.2e-20 103.6 131 46.6
GSVIVG01038096001 Vitis vinifera HOM05D001620 ORTHO05D005461 2.1e-20 102.8 131 74.0
Prupe.1G201600 Prunus persica HOM05D001620 ORTHO05D005461 3.0e-19 99.0 129 46.5
MD04G1047000 Malus domestica HOM05D001620 ORTHO05D005461 1.5e-18 96.7 131 59.5
Ciclev10021852m.g Citrus clementina HOM05D001620 ORTHO05D005461 1.6e-17 93.2 134 41.8
QL10p052582 Quercus lobata HOM05D001620 ORTHO05D005461 1.6e-17 93.2 127 74.0
MBI07_g02902_MAGBIO Magnolia biondii HOM05D001620 ORTHO05D005461 2.1e-17 92.8 131 70.2
Cc03_g11940 Coffea canephora HOM05D001620 ORTHO05D005461 4.8e-17 91.7 131 64.9
SalBow6G2343 Salvia bowleyana HOM05D001620 ORTHO05D005461 8.1e-17 90.9 133 40.6
TAR365G0548 Trochodendron aralioides HOM05D001620 ORTHO05D005461 8.1e-17 90.9 131 71.8
HPP92_013691 Vanilla planifolia HOM05D001620 ORTHO05D005461 1.1e-16 90.5 131 53.4
PSO675G0461 Papaver somniferum HOM05D001620 ORTHO05D005461 1.8e-16 89.7 136 66.9
Cc00_g03540 Coffea canephora HOM05D001620 ORTHO05D005461 5.3e-16 88.2 131 39.7
Atru.chr4.1349 Acer truncatum HOM05D001620 ORTHO05D005461 9.0e-16 87.4 137 55.5
Nitab4.5_0002421g0040 Nicotiana tabacum HOM05D001620 ORTHO05D005461 9.0e-16 87.4 133 48.9
MSTRG.22018 Avicennia marina HOM05D001620 ORTHO05D005461 1.5e-15 86.7 136 39.7
Nitab4.5_0001481g0050 Nicotiana tabacum HOM05D001620 ORTHO05D005461 2.6e-15 85.9 126 40.5
Sabra07G0109000 Salix brachista HOM05D001620 ORTHO05D005461 2.6e-15 85.9 128 68.8
PGSC0003DMG400022873 Solanum tuberosum HOM05D001620 ORTHO05D005461 4.5e-15 85.1 126 40.5
HanXRQChr13g0419631 Helianthus annuus HOM05D001620 ORTHO05D005461 7.6e-15 84.3 131 67.2
CAN.G1186.27 Capsicum annuum HOM05D001620 ORTHO05D005461 9.9e-15 84.0 131 38.9
Oeu015935.2 Olea europaea HOM05D001620 ORTHO05D005461 9.9e-15 84.0 129 39.5
Solyc11g045220.2 Solanum lycopersicum HOM05D001620 ORTHO05D005461 1.7e-14 83.2 126 39.7
Sopen11g020680 Solanum pennellii HOM05D001620 ORTHO05D005461 1.7e-14 83.2 126 39.7
CANSAT54G0752 Cannabis sativa HOM05D001620 ORTHO05D005461 2.2e-14 82.8 128 71.1
Duzib212G0571 Durio zibethinus HOM05D001620 ORTHO05D005461 2.2e-14 82.8 131 65.6
Lsat_1_v5_gn_3_109820 Lactuca sativa HOM05D001620 ORTHO05D005461 2.2e-14 82.8 131 38.9
ClCG07G015080 Citrullus lanatus HOM05D001620 ORTHO05D005461 2.9e-14 82.4 128 37.5
Gohir.A02G092600 Gossypium hirsutum HOM05D001620 ORTHO05D005461 3.8e-14 82.0 131 53.4
Eucgr.A00034 Eucalyptus grandis HOM05D001620 ORTHO05D005461 4.9e-14 81.6 131 38.9
Potri.007G134300 Populus trichocarpa HOM05D001620 ORTHO05D005461 4.9e-14 81.6 129 39.5
Sed0025758 Sechium edule HOM05D001620 ORTHO05D005461 4.9e-14 81.6 132 64.4
Manes.11G127400 Manihot esculenta HOM05D001620 ORTHO05D005461 8.4e-14 80.9 128 68.0
Cc03_g12150 Coffea canephora HOM05D001620 ORTHO05D005461 1.1e-13 80.5 119 39.5
unitig_85.g27224 Utricularia gibba HOM05D004939 ORTHO05D005843 1.1e-13 80.5 129 36.4
Migut.N03083 Erythranthe guttata HOM05D001620 ORTHO05D005461 3.2e-13 79.0 131 36.6
PGR014G0005 Punica granatum HOM05D001620 ORTHO05D005461 4.2e-13 78.6 131 64.9
PGR083G0805 Punica granatum HOM05D001620 ORTHO05D005461 4.2e-13 78.6 131 64.9
ATR0743G190 Amborella trichopoda HOM05D001620 ORTHO05D005461 1.6e-12 76.6 131 64.1
Gorai.005G125600 Gossypium raimondii HOM05D001620 ORTHO05D005461 3.5e-12 75.5 131 53.4
CiPaw.01G173100 Carya illinoinensis HOM05D001620 ORTHO05D005461 6.0e-12 74.7 127 41.7
Gohir.D02G110700 Gossypium hirsutum HOM05D001620 ORTHO05D005461 6.0e-12 74.7 129 54.3
CDE02G0743 Ceratophyllum demersum HOM05D001620 ORTHO05D005461 3.0e-11 72.4 126 32.5
Peaxi162Scf00126g00814 Petunia axillaris HOM05D001620 ORTHO05D005461 3.0e-11 72.4 126 65.1
CsaV3_4G002630 Cucumis sativus L. HOM05D001620 ORTHO05D005461 3.9e-11 72.0 128 64.1
Dinv25389 Davidia involucrata HOM05D001620 ORTHO05D005461 1.1e-10 70.5 109 40.4
MELO3C017777.2 Cucumis melo HOM05D001620 ORTHO05D005461 1.5e-10 70.1 118 67.8
arahy.Tifrunner.gnm1.ann1.UZY3CQ Arachis hypogaea HOM05D001620 ORTHO05D005461 3.3e-10 68.9 128 48.4
Glyma.15G269900 Glycine max HOM05D001620 ORTHO05D005461 4.3e-10 68.6 134 34.3
SGA_v2.0_scaffold25G10993 Striga asiatica HOM05D001620 ORTHO05D005461 7.4e-10 67.8 114 33.3
arahy.Tifrunner.gnm1.ann1.G0W8DL Arachis hypogaea HOM05D001620 ORTHO05D005461 9.6e-10 67.4 128 32.0
Cpa.g.sc9.334 Carica papaya HOM05D001620 ORTHO05D005461 2.8e-09 65.9 129 50.4
Thecc.04G171200 Theobroma cacao HOM05D001620 ORTHO05D005461 2.8e-09 65.9 108 35.2
ECA240G4634 Erigeron canadensis HOM05D001620 ORTHO05D005461 3.7e-09 65.5 110 35.5
Peaxi162Scf00126g00627 Petunia axillaris HOM05D001620 ORTHO05D005461 1.1e-08 63.9 147 44.9
Lj3g0024858 Lotus japonicus HOM05D001620 ORTHO05D005461 1.2e-07 60.5 132 37.9
Medtr2g099410 Medicago truncatula HOM05D001620 ORTHO05D005461 2.6e-07 59.3 117 30.8
Phvul.005G155600 Phaseolus vulgaris HOM05D001620 ORTHO05D005461 2.6e-07 59.3 134 29.9
TPR.G22628 Trifolium pratense HOM05D001620 ORTHO05D005461 5.8e-07 58.2 117 29.9
CDE08G0938 Ceratophyllum demersum HOM05D001620 ORTHO05D005461 7.6e-07 57.8 47 55.3
Hma1.2p1_2359F.1_g320596 Hydrangea macrophylla HOM05D001620 ORTHO05D005461 7.6e-07 57.8 47 63.8
ATR0605G201 Amborella trichopoda HOM05D001620 ORTHO05D005461 1.0e-06 57.4 126 33.3
Psat5g291680 Pisum sativum HOM05D001620 ORTHO05D005461 1.0e-06 57.4 119 31.1
MBI17_g25734_MAGBIO Magnolia biondii HOM05D001620 ORTHO05D005461 2.9e-06 55.8 113 31.9
SEGI_37669 Sequoiadendron giganteum HOM05D001620 ORTHO05D005461 8.4e-06 54.3 124 25.8


User provided reference genes

Program Settings