Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.07g202460 Amaranthus hybridus HOM05D003822 ORTHO05D004484 2.0e-145 519.2 289 100.0
AUR62002363 Chenopodium quinoa HOM05D003822 ORTHO05D004484 2.6e-105 386.0 301 77.4
Hund03185 Selenicereus undatus HOM05D003822 ORTHO05D004484 4.6e-102 375.2 290 72.8
EL10Ac3g06027 Beta vulgaris HOM05D003822 ORTHO05D004484 5.3e-98 361.7 296 75.0
Sc19g0002790 Simmondsia chinensis HOM05D003822 ORTHO05D004484 9.3e-95 350.9 293 72.4
Hma1.2p1_0635F.1_g193140 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 1.7e-88 330.1 306 65.0
VMungo1080G0920 Vigna mungo HOM05D003822 ORTHO05D004484 1.4e-87 327.0 299 67.9
Nn7g37555 Nelumbo nucifera HOM05D003822 ORTHO05D004484 3.3e-84 315.8 292 67.8
AUR62023822 Chenopodium quinoa HOM05D003822 ORTHO05D004484 5.7e-84 315.1 295 68.5
QL10p052081 Quercus lobata HOM05D003822 ORTHO05D004484 9.7e-84 314.3 296 64.5
SGA_v2.0_scaffold77G25327 Striga asiatica HOM05D003822 ORTHO05D004484 1.7e-83 313.5 291 64.9
Glyma.15G027800 Glycine max HOM05D003822 ORTHO05D004484 2.2e-83 313.2 301 66.4
Glyma.13G346400 Glycine max HOM05D003822 ORTHO05D004484 6.3e-83 311.6 305 64.9
Prupe.1G200400 Prunus persica HOM05D003822 ORTHO05D004484 2.6e-81 306.2 305 63.6
TPR.G6564 Trifolium pratense HOM05D003822 ORTHO05D004484 2.6e-81 306.2 304 60.9
MSTRG.17947 Avicennia marina HOM05D003822 ORTHO05D004484 7.7e-81 304.7 293 64.8
Nn1g09539 Nelumbo nucifera HOM05D003822 ORTHO05D004484 1.0e-80 304.3 292 66.4
Potri.017G018400 Populus trichocarpa HOM05D003822 ORTHO05D004484 3.8e-80 302.4 311 62.4
Hma1.2p1_2403F.1_g321420 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 6.5e-80 301.6 315 59.7
Haze_01421 Corylus avellana HOM05D003822 ORTHO05D004484 1.1e-79 300.8 300 62.0
TAR633G2284 Trochodendron aralioides HOM05D003822 ORTHO05D004484 1.4e-79 300.4 278 68.0
Cfa015215 Carpinus fangiana HOM05D003822 ORTHO05D004484 1.9e-79 300.1 310 61.6
FAN08G2486 Fragaria x ananassa HOM05D003822 ORTHO05D004484 3.2e-79 299.3 306 59.5
COL.COLO4_29926 Corchorus olitorius HOM05D003822 ORTHO05D004484 7.2e-79 298.1 307 61.6
Eucgr.A00039 Eucalyptus grandis HOM05D003822 ORTHO05D004484 9.4e-79 297.7 297 63.3
Glyma.11G125400 Glycine max HOM05D003822 ORTHO05D004484 2.7e-78 296.2 281 63.7
Gorai.007G162100 Gossypium raimondii HOM05D003822 ORTHO05D004484 3.6e-78 295.8 295 61.7
Gohir.D11G153200 Gossypium hirsutum HOM05D003822 ORTHO05D004484 7.9e-78 294.7 295 61.7
TAR362G1102 Trochodendron aralioides HOM05D003822 ORTHO05D004484 1.8e-77 293.5 298 62.8
Sabra07G0108500 Salix brachista HOM05D003822 ORTHO05D004484 6.7e-77 291.6 293 62.5
Sabra07G0120800 Salix brachista HOM05D003822 ORTHO05D004484 6.7e-77 291.6 293 62.5
Peaxi162Scf00995g00322 Petunia axillaris HOM05D003822 ORTHO05D004484 1.1e-76 290.8 290 63.8
VMungo1127G1572 Vigna mungo HOM05D003822 ORTHO05D004484 2.6e-76 289.7 288 62.2
Gohir.A11G145000 Gossypium hirsutum HOM05D003822 ORTHO05D004484 9.7e-76 287.7 295 59.7
Lalb_Chr24g0396641 Lupinus albus HOM05D003822 ORTHO05D004484 4.8e-75 285.4 316 59.5
Sabra17G0014400 Salix brachista HOM05D000455 ORTHO05D000434 8.2e-75 284.6 308 59.7
Thecc.01G205200 Theobroma cacao HOM05D003822 ORTHO05D004484 1.1e-74 284.3 295 63.1
Eucgr.H00681 Eucalyptus grandis HOM05D003822 ORTHO05D004484 1.4e-74 283.9 309 62.1
RcHm_v2.0_Chr1g0340971 Rosa chinensis HOM05D003822 ORTHO05D004484 1.8e-74 283.5 307 57.3
Ca_01239_v3 Cicer arietinum L. HOM05D003822 ORTHO05D004484 2.4e-74 283.1 298 63.1
Manes.13G057600 Manihot esculenta HOM05D003822 ORTHO05D004484 4.1e-74 282.3 289 61.6
Lalb_Chr22g0352031 Lupinus albus HOM05D003822 ORTHO05D004484 5.3e-74 282.0 291 62.9
Phvul.005G155400 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 5.3e-74 282.0 297 61.6
PGR102G0947 Punica granatum HOM05D003822 ORTHO05D004484 5.3e-74 282.0 301 61.8
Sed0021377 Sechium edule HOM05D003822 ORTHO05D004484 5.3e-74 282.0 290 64.5
Oeu013421.2 Olea europaea HOM05D003822 ORTHO05D004484 2.0e-73 280.0 303 61.4
unitig_22.g5196 Utricularia gibba HOM05D003822 ORTHO05D004484 2.0e-73 280.0 287 59.2
FAN18G3379 Fragaria x ananassa HOM05D003822 ORTHO05D004484 2.6e-73 279.6 321 57.0
vmacro14674 Vaccinium macrocarpon HOM05D003822 ORTHO05D004484 1.3e-72 277.3 291 60.1
FAN04G1289 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.7e-72 276.9 314 57.3
MD04G1046700 Malus domestica HOM05D003822 ORTHO05D004484 2.9e-72 276.2 314 58.9
TAR365G1107 Trochodendron aralioides HOM05D003822 ORTHO05D004484 6.5e-72 275.0 276 64.9
Ciclev10016105m.g Citrus clementina HOM05D003822 ORTHO05D004484 8.5e-72 274.6 301 61.1
Sabra14G0133100 Salix brachista HOM05D003822 ORTHO05D004484 3.2e-71 272.7 298 59.1
Actinidia23132 Actinidia chinensis HOM05D003822 ORTHO05D004484 7.2e-71 271.6 301 56.5
THA.LOC104822456 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 9.4e-71 271.2 293 62.8
CiPaw.01G173700 Carya illinoinensis HOM05D003822 ORTHO05D004484 1.2e-70 270.8 300 60.7
RcHm_v2.0_Chr7g0230961 Rosa chinensis HOM05D003822 ORTHO05D004484 1.2e-70 270.8 330 53.6
arahy.Tifrunner.gnm1.ann1.0NAL6S Arachis hypogaea HOM05D003822 ORTHO05D004484 2.1e-70 270.0 301 61.5
Ciclev10021425m.g Citrus clementina HOM05D003822 ORTHO05D004484 2.1e-70 270.0 296 61.8
Lj3g0024368 Lotus japonicus HOM05D003822 ORTHO05D004484 2.1e-70 270.0 281 63.3
arahy.Tifrunner.gnm1.ann1.1KAH27 Arachis hypogaea HOM05D003822 ORTHO05D004484 2.7e-70 269.6 301 61.5
TWI18G0659 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 3.6e-70 269.2 292 62.7
Actinidia34522 Actinidia chinensis HOM05D003822 ORTHO05D004484 4.7e-70 268.9 296 56.8
CiPaw.02G103400 Carya illinoinensis HOM05D003822 ORTHO05D004484 4.7e-70 268.9 294 59.9
MELO3C017788.2 Cucumis melo HOM05D003822 ORTHO05D004484 4.7e-70 268.9 291 58.4
Medtr2g099360 Medicago truncatula HOM05D003822 ORTHO05D004484 8.0e-70 268.1 326 54.6
Cc02_g30690 Coffea canephora HOM05D003822 ORTHO05D004484 1.0e-69 267.7 300 58.3
HanXRQChr10g0281191 Helianthus annuus HOM05D003822 ORTHO05D004484 1.4e-69 267.3 291 57.0
ECA236G4570 Erigeron canadensis HOM05D003822 ORTHO05D004484 1.8e-69 266.9 308 57.8
TWI36G1391 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 1.8e-69 266.9 291 61.5
TWI36G1709 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 1.8e-69 266.9 291 61.5
Solyc06g007700.4 Solanum lycopersicum HOM05D003822 ORTHO05D004484 5.2e-69 265.4 295 60.7
FvH4_5g32960 Fragaria vesca HOM05D003822 ORTHO05D004484 8.8e-69 264.6 312 56.4
Aqoxy2G04159 Aquilegia oxysepala HOM05D003822 ORTHO05D004484 2.6e-68 263.1 298 59.1
Duzib211G0255 Durio zibethinus HOM05D003822 ORTHO05D004484 2.6e-68 263.1 291 60.8
THA.LOC104819024 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 5.7e-68 261.9 298 60.1
Sabra17G0002300 Salix brachista HOM05D000455 ORTHO05D000434 7.4e-68 261.5 348 52.9
Carub.0003s0711 Capsella rubella HOM05D003822 ORTHO05D004484 3.7e-67 259.2 303 61.4
ECA248G1190 Erigeron canadensis HOM05D002050 ORTHO05D001949 3.7e-67 259.2 283 56.5
Duzib133G0954 Durio zibethinus HOM05D003822 ORTHO05D004484 6.3e-67 258.5 288 60.1
HanXRQChr01g0010521 Helianthus annuus HOM05D003822 ORTHO05D004484 8.2e-67 258.1 299 57.5
Dinv28779 Davidia involucrata HOM05D003822 ORTHO05D004484 1.4e-66 257.3 279 61.6
Nitab4.5_0002641g0020 Nicotiana tabacum HOM05D003822 ORTHO05D004484 2.4e-66 256.5 298 58.7
Cpa.g.sc8.23 Carica papaya HOM05D003822 ORTHO05D004484 3.1e-66 256.1 292 58.2
Nitab4.5_0003952g0050 Nicotiana tabacum HOM05D003822 ORTHO05D004484 5.3e-66 255.4 305 54.1
PSO017G3256 Papaver somniferum HOM05D003822 ORTHO05D004484 3.5e-65 252.7 313 54.6
BraA05t22796Z Brassica rapa HOM05D003822 ORTHO05D004484 2.2e-64 250.0 298 59.1
PSO837G0022 Papaver somniferum HOM05D003822 ORTHO05D004484 2.2e-64 250.0 313 54.0
A05p40650 Brassica napus HOM05D003822 ORTHO05D004484 2.9e-64 249.6 290 59.7
CANSAT56G4141 Cannabis sativa HOM05D003822 ORTHO05D004484 5.0e-64 248.8 328 57.6
MD00G1127600 Malus domestica HOM05D003822 ORTHO05D004484 6.5e-64 248.4 300 57.7
Lsat_1_v5_gn_8_98601 Lactuca sativa HOM05D003822 ORTHO05D004484 8.5e-64 248.1 308 57.5
PGR083G0513 Punica granatum HOM05D003822 ORTHO05D004484 1.1e-63 247.7 293 60.1
CsaV3_4G002560 Cucumis sativus L. HOM05D003822 ORTHO05D004484 1.5e-63 247.3 296 59.1
AT3G07560 Arabidopsis thaliana HOM05D003822 ORTHO05D004484 1.9e-63 246.9 310 57.4
MBI02_g24302_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 1.9e-63 246.9 304 57.6
Sed0005976 Sechium edule HOM05D003822 ORTHO05D004484 2.5e-63 246.5 291 58.4
BcaB03g14694 Brassica carinata HOM05D003822 ORTHO05D004484 3.2e-63 246.1 306 57.2
Manes.11G127100 Manihot esculenta HOM05D003822 ORTHO05D004484 7.2e-63 245.0 248 62.9
Thhalv10021215m.g Eutrema salsugineum HOM05D003822 ORTHO05D004484 9.4e-63 244.6 312 55.4
AL3G18900 Arabidopsis lyrata HOM05D003822 ORTHO05D004484 2.1e-62 243.4 309 56.0
Lj3g0026330 Lotus japonicus HOM05D003822 ORTHO05D004484 3.6e-62 242.7 331 53.2
Peaxi162Scf00372g00722 Petunia axillaris HOM05D003822 ORTHO05D004484 4.7e-62 242.3 292 56.8
CANSAT11G1915 Cannabis sativa HOM05D003822 ORTHO05D004484 1.8e-61 240.4 317 56.5
Atru.chr6.3488 Acer truncatum HOM05D003822 ORTHO05D004484 2.3e-61 240.0 320 53.1
Sopen06g002590 Solanum pennellii HOM05D003822 ORTHO05D004484 2.3e-61 240.0 294 57.1
Potri.014G197200 Populus trichocarpa HOM05D003822 ORTHO05D004484 3.0e-61 239.6 311 54.7
Sp3g06480 Schrenkiella parvula HOM05D003822 ORTHO05D004484 4.0e-61 239.2 313 55.9
Manes.12G057507 Manihot esculenta HOM05D003822 ORTHO05D004484 3.4e-60 236.1 286 57.0
Manes.12G057905 Manihot esculenta HOM05D003822 ORTHO05D004484 3.4e-60 236.1 286 57.0
CAN.G181.49 Capsicum annuum HOM05D003822 ORTHO05D004484 4.4e-60 235.7 298 55.0
CDE05G3137 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 1.7e-59 233.8 285 53.0
HPP92_015668 Vanilla planifolia HOM05D003822 ORTHO05D004484 2.2e-59 233.4 286 55.9
PGSC0003DMG400020658 Solanum tuberosum HOM05D003822 ORTHO05D004484 6.3e-59 231.9 300 58.0
Manes.12G058903 Manihot esculenta HOM05D003822 ORTHO05D004484 1.4e-58 230.7 290 55.5
Aa31LG5G18100 Aethionema arabicum HOM05D003822 ORTHO05D004484 1.8e-58 230.3 314 51.9
ClCG07G011660 Citrullus lanatus HOM05D003822 ORTHO05D004484 3.1e-58 229.6 397 45.6
Duzib138G1354 Durio zibethinus HOM05D003822 ORTHO05D004484 5.3e-58 228.8 291 56.7
C03p42940 Brassica napus HOM05D003822 ORTHO05D004484 5.9e-57 225.3 306 52.9
Zm00001eb117520 Zea mays HOM05D003822 ORTHO05D004484 7.7e-57 224.9 289 55.0
CSS0026869 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 2.9e-56 223.0 284 57.7
CDE02G4798 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 8.5e-56 221.5 281 53.4
BcaC01g04277 Brassica carinata HOM05D003822 ORTHO05D004484 1.5e-55 220.7 304 52.6
A03p35330 Brassica napus HOM05D003822 ORTHO05D004484 7.2e-55 218.4 302 52.6
SGA_v2.0_scaffold95G28678 Striga asiatica HOM05D003822 ORTHO05D004484 4.7e-54 215.7 221 62.0
BcaB04g21287 Brassica carinata HOM05D003822 ORTHO05D004484 4.0e-53 212.6 291 50.9
C05p59760 Brassica napus HOM05D003822 ORTHO05D004484 1.5e-52 210.7 298 51.3
BolC5t34630H Brassica oleracea HOM05D003822 ORTHO05D004484 2.0e-52 210.3 310 49.4
ATR0752G090 Amborella trichopoda HOM05D003822 ORTHO05D004484 1.7e-51 207.2 298 51.0
BolC3t16562H Brassica oleracea HOM05D003822 ORTHO05D004484 1.7e-51 207.2 303 54.1
Os07g0152800 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 2.8e-51 206.5 295 54.9
Zm00001eb059960 Zea mays HOM05D003822 ORTHO05D004484 2.4e-50 203.4 277 50.9
Os03g0786000 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 1.2e-49 201.1 295 51.9
BcaC05g29550 Brassica carinata HOM05D003822 ORTHO05D004484 1.6e-49 200.7 295 50.5
Lsat_1_v5_gn_5_175601 Lactuca sativa HOM05D003822 ORTHO05D004484 1.0e-48 198.0 277 54.2
CSS0006211 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 2.9e-48 196.4 207 61.4
MBI18_g24478_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 7.2e-47 191.8 276 48.6
Migut.N00690 Erythranthe guttata HOM05D003822 ORTHO05D004484 1.6e-46 190.7 307 51.1
SEGI_07594 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 4.0e-45 186.0 307 47.2
SEGI_01562 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 7.5e-44 181.8 304 46.4
Oeu020438.1 Olea europaea HOM05D003822 ORTHO05D004484 3.7e-43 179.5 204 61.3
MSTRG.12733 Avicennia marina HOM05D003822 ORTHO05D004484 1.4e-42 177.6 201 62.2
Phvul.011G052000 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 4.1e-42 176.0 204 56.9
PGSC0003DMG400020552 Solanum tuberosum HOM05D003822 ORTHO05D004484 1.0e-40 171.4 212 57.1
Actinidia11655 Actinidia chinensis HOM05D003822 ORTHO05D004484 1.7e-40 170.6 210 59.0
BraA01t04376Z Brassica rapa HOM05D003822 ORTHO05D004484 1.1e-39 167.9 141 61.7
Psat5g291600 Pisum sativum HOM05D003822 ORTHO05D004484 2.5e-39 166.8 240 54.2
Gorai.N001500 Gossypium raimondii HOM05D003822 ORTHO05D004484 3.3e-39 166.4 287 47.0
Lj2C1109G11 Lonicera japonica HOM05D003822 ORTHO05D004484 4.0e-37 159.5 292 43.8
BolC1t05546H Brassica oleracea HOM05D003822 ORTHO05D004484 8.9e-37 158.3 236 52.1
SMO146G0020 Selaginella moellendorffii HOM05D003822 ORTHO05D004484 7.0e-34 148.7 311 40.2
unitig_8.g3681 Utricularia gibba HOM05D003822 ORTHO05D004484 5.0e-32 142.5 164 57.9
Manes.12G058104 Manihot esculenta HOM05D003822 ORTHO05D004484 1.9e-31 140.6 102 65.7
FAN01G1095 Fragaria x ananassa HOM05D003822 ORTHO05D004484 2.6e-28 130.2 202 48.5
AagrBONN_evm.TU.Sc2ySwM_368.3329 Anthoceros agrestis HOM05D003822 ORTHO05D004484 9.8e-28 128.3 315 41.9
Mapoly0080s0067 Marchantia polymorpha HOM05D003822 ORTHO05D004484 1.7e-27 127.5 328 40.2
Pp3c11_19790 Physcomitrium patens HOM05D003822 ORTHO05D004484 2.9e-27 126.7 315 40.0
CBR_g38951 Chara braunii HOM05D003822 ORTHO05D004484 1.0e-24 118.2 332 39.2
MSTRG.12731 Avicennia marina HOM05D003822 ORTHO05D004484 3.9e-24 116.3 99 52.5
CSS0030404 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 3.6e-22 109.8 90 64.4
Atru.chr4.1339 Acer truncatum HOM05D003822 ORTHO05D004484 8.1e-22 108.6 76 72.4
CARHR082240 Cardamine hirsuta HOM05D003822 ORTHO05D004484 1.1e-21 108.2 202 53.0
FAN06G0586 Fragaria x ananassa HOM05D003822 ORTHO05D004484 2.3e-21 107.1 105 58.1
Hma1.2p1_0161F.1_g071790 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 2.0e-20 104.0 199 41.2
Oeu020439.1 Olea europaea HOM05D003822 ORTHO05D004484 2.6e-20 103.6 88 64.8
Gohir.A07G157900 Gossypium hirsutum HOM05D003822 ORTHO05D004484 3.4e-20 103.2 120 55.8
FAN10G3558 Fragaria x ananassa HOM05D003822 ORTHO05D046505 4.9e-19 99.4 79 69.6
FvH4_7g08180 Fragaria vesca HOM05D003822 ORTHO05D046505 1.4e-18 97.8 78 69.2
Cre13.g574700 Chlamydomonas reinhardtii HOM05D003822 ORTHO05D004484 1.6e-17 94.4 70 64.3
Thecc.04G171800 Theobroma cacao HOM05D003822 ORTHO05D004484 3.5e-17 93.2 72 61.1
CARHR082220 Cardamine hirsuta HOM05D003822 ORTHO05D004484 1.0e-16 91.7 110 48.2
Eucgr.B03613 Eucalyptus grandis HOM05D003822 ORTHO05D004484 1.5e-15 87.8 69 66.7
Eucgr.C02476 Eucalyptus grandis HOM05D003822 ORTHO05D004484 2.5e-15 87.0 63 68.3
MCO15G241 Micromonas commoda HOM05D003822 ORTHO05D004484 3.6e-14 83.2 277 39.7
Sabra06G0076200 Salix brachista HOM05D003822 ORTHO05D349384 1.3e-11 74.7 121 60.3
FAN01G2016 Fragaria x ananassa HOM05D003822 ORTHO05D004484 7.1e-10 68.9 44 81.8
FAN06G2565 Fragaria x ananassa HOM05D003822 ORTHO05D001690 1.0e-08 65.1 88 48.9
ATR0737G020 Amborella trichopoda HOM05D003822 ORTHO05D004484 1.7e-08 64.3 78 50.0
CBR_g50337 Chara braunii HOM05D003822 ORTHO05D004484 2.5e-07 60.5 261 39.5
SEGI_40649 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 3.3e-07 60.1 102 48.0
SEGI_02285 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 1.3e-06 58.2 115 42.6
Zm00001eb392350 Zea mays HOM05D000367 ORTHO05D001438 8.1e-06 55.5 46 65.2


User provided reference genes

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