Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.07g201980 Amaranthus hybridus HOM05D006283 ORTHO05D007727 5.5e-49 197.2 93 100.0
Hund12011 Selenicereus undatus HOM05D006283 ORTHO05D007727 3.0e-10 68.6 42 69.0
MSTRG.9766 Avicennia marina HOM05D006283 ORTHO05D007727 1.1e-09 66.6 42 66.7
Atru.chr3.1494 Acer truncatum HOM05D006283 ORTHO05D007727 1.9e-09 65.9 36 72.2
Actinidia35975 Actinidia chinensis HOM05D006283 ORTHO05D007727 2.5e-09 65.5 73 47.9
COL.COLO4_07661 Corchorus olitorius HOM05D006283 ORTHO05D007727 2.5e-09 65.5 46 56.5
Lalb_Chr01g0003171 Lupinus albus HOM05D006283 ORTHO05D007727 3.3e-09 65.1 78 46.2
arahy.Tifrunner.gnm1.ann1.7GR0QN Arachis hypogaea HOM05D006283 ORTHO05D007727 4.3e-09 64.7 50 56.0
TAR362G0864 Trochodendron aralioides HOM05D006283 ORTHO05D007727 4.3e-09 64.7 36 72.2
EL10Ac3g05930 Beta vulgaris HOM05D006283 ORTHO05D007727 5.6e-09 64.3 54 55.6
PSO017G4585 Papaver somniferum HOM05D006283 ORTHO05D007727 5.6e-09 64.3 36 72.2
PSO675G6362 Papaver somniferum HOM05D006283 ORTHO05D007727 5.6e-09 64.3 36 72.2
FvH4_4g10770 Fragaria vesca HOM05D006283 ORTHO05D007727 7.3e-09 63.9 36 72.2
FAN12G2405 Fragaria x ananassa HOM05D006283 ORTHO05D007727 7.3e-09 63.9 36 72.2
QL10p048749 Quercus lobata HOM05D006283 ORTHO05D007727 7.3e-09 63.9 36 72.2
GSVIVG01010753001 Vitis vinifera HOM05D006283 ORTHO05D007727 7.3e-09 63.9 36 69.4
Duzib268G1109 Durio zibethinus HOM05D006283 ORTHO05D007727 9.6e-09 63.5 36 69.4
CANSAT78G1066 Cannabis sativa HOM05D006283 ORTHO05D007727 1.3e-08 63.2 36 69.4
DCAR_029916 Daucus carota HOM05D006283 ORTHO05D007727 1.3e-08 63.2 36 69.4
Potri.019G051300 Populus trichocarpa HOM05D006283 ORTHO05D007727 1.3e-08 63.2 36 66.7
CiPaw.02G054900 Carya illinoinensis HOM05D006283 ORTHO05D007727 1.6e-08 62.8 36 69.4
Rhsim09G0027900 Rhododendron simsii HOM05D006283 ORTHO05D007727 1.6e-08 62.8 53 58.5
RcHm_v2.0_Chr4g0406391 Rosa chinensis HOM05D006283 ORTHO05D007727 1.6e-08 62.8 36 69.4
ECA234G3618 Erigeron canadensis HOM05D006283 ORTHO05D007727 2.1e-08 62.4 92 35.9
Hma1.2p1_0847F.1_g227833 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 2.1e-08 62.4 36 66.7
Nitab4.5_0000130g0340 Nicotiana tabacum HOM05D006283 ORTHO05D007727 2.1e-08 62.4 36 72.2
Actinidia34602 Actinidia chinensis HOM05D006283 ORTHO05D007727 2.8e-08 62.0 36 66.7
AUR62015391 Chenopodium quinoa HOM05D006283 ORTHO05D007727 2.8e-08 62.0 34 76.5
Ciclev10021635m.g Citrus clementina HOM05D006283 ORTHO05D007727 2.8e-08 62.0 34 73.5
Migut.N02075 Erythranthe guttata HOM05D006283 ORTHO05D007727 2.8e-08 62.0 36 69.4
Eucgr.H00372 Eucalyptus grandis HOM05D006283 ORTHO05D007727 2.8e-08 62.0 36 66.7
FAN07G2518 Fragaria x ananassa HOM05D006283 ORTHO05D007727 2.8e-08 62.0 34 73.5
SGA_v2.0_scaffold12G06158 Striga asiatica HOM05D006283 ORTHO05D007727 2.8e-08 62.0 53 54.7
vmacro00624 Vaccinium macrocarpon HOM05D006283 ORTHO05D007727 2.8e-08 62.0 40 67.5
Gohir.A10G137000 Gossypium hirsutum HOM05D006283 ORTHO05D007727 3.6e-08 61.6 36 69.4
Gohir.D10G129700 Gossypium hirsutum HOM05D006283 ORTHO05D007727 3.6e-08 61.6 36 69.4
Gorai.011G143000 Gossypium raimondii HOM05D006283 ORTHO05D007727 3.6e-08 61.6 36 69.4
Nn1g09881 Nelumbo nucifera HOM05D006283 ORTHO05D007727 3.6e-08 61.6 36 69.4
Thecc.04G180000 Theobroma cacao HOM05D006283 ORTHO05D007727 3.6e-08 61.6 36 69.4
TPR.G34200 Trifolium pratense HOM05D006283 ORTHO05D007727 3.6e-08 61.6 52 55.8
Dinv22729 Davidia involucrata HOM05D006283 ORTHO05D007727 4.8e-08 61.2 36 63.9
Manes.11G120300 Manihot esculenta HOM05D006283 ORTHO05D007727 4.8e-08 61.2 36 66.7
Lj3A196T13 Lonicera japonica HOM05D006283 ORTHO05D007727 6.2e-08 60.8 34 70.6
Peaxi162Scf00126g00015 Petunia axillaris HOM05D006283 ORTHO05D007727 6.2e-08 60.8 74 45.9
RcHm_v2.0_Chr4g0406821 Rosa chinensis HOM05D006283 ORTHO05D007727 6.2e-08 60.8 34 73.5
Duzib151G0050 Durio zibethinus HOM05D006283 ORTHO05D007727 8.1e-08 60.5 33 72.7
SalBow3G2028 Salvia bowleyana HOM05D006283 ORTHO05D007727 8.1e-08 60.5 37 67.6
CAN.G1247.5 Capsicum annuum HOM05D006283 ORTHO05D007727 1.1e-07 60.1 52 50.0
Hma1.2p1_0639F.1_g194055 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 1.1e-07 60.1 33 69.7
Hma1.2p1_0847F.1_g227840 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 1.1e-07 60.1 33 69.7
TWI15G0224 Tripterygium wilfordii HOM05D006283 ORTHO05D007727 1.1e-07 60.1 36 63.9
TWI15G1054 Tripterygium wilfordii HOM05D006283 ORTHO05D007727 1.1e-07 60.1 36 63.9
Haze_01514 Corylus avellana HOM05D006283 ORTHO05D007727 1.4e-07 59.7 34 67.6
Oeu034461.3 Olea europaea HOM05D006283 ORTHO05D007727 1.4e-07 59.7 33 69.7
arahy.Tifrunner.gnm1.ann1.9EYB94 Arachis hypogaea HOM05D006283 ORTHO05D007727 1.8e-07 59.3 33 69.7
Ca_20784_v3 Cicer arietinum L. HOM05D006283 ORTHO05D007727 1.8e-07 59.3 52 53.8
PGR142G0689 Punica granatum HOM05D006283 ORTHO05D007727 1.8e-07 59.3 36 63.9
PGSC0003DMG400030791 Solanum tuberosum HOM05D006283 ORTHO05D007727 1.8e-07 59.3 52 53.8
VMungo1127G0333 Vigna mungo HOM05D006283 ORTHO05D007727 1.8e-07 59.3 36 66.7
Cc03_g13090 Coffea canephora HOM05D006283 ORTHO05D007727 2.4e-07 58.9 84 40.5
Glyma.11G127900 Glycine max HOM05D006283 ORTHO05D007727 2.4e-07 58.9 36 66.7
Medtr4g067140 Medicago truncatula HOM05D006283 ORTHO05D007727 2.4e-07 58.9 50 54.0
Solyc06g054450.3 Solanum lycopersicum HOM05D006283 ORTHO05D007727 2.4e-07 58.9 52 51.9
Sopen06g019520 Solanum pennellii HOM05D006283 ORTHO05D007727 2.4e-07 58.9 52 51.9
Peaxi162Scf00126g00003 Petunia axillaris HOM05D006283 ORTHO05D007727 3.1e-07 58.5 34 67.6
Phvul.011G054600 Phaseolus vulgaris HOM05D006283 ORTHO05D007727 3.1e-07 58.5 36 63.9
Sc13g0006800 Simmondsia chinensis HOM05D006283 ORTHO05D007727 3.1e-07 58.5 36 63.9
CDE08G0087 Ceratophyllum demersum HOM05D006283 ORTHO05D007727 4.0e-07 58.2 83 43.4
MELO3C017715.2 Cucumis melo HOM05D006283 ORTHO05D007727 5.3e-07 57.8 53 50.9
CsaV3_4G003450 Cucumis sativus L. HOM05D006283 ORTHO05D007727 5.3e-07 57.8 53 50.9
Sabra19G0057300 Salix brachista HOM05D006283 ORTHO05D007727 5.3e-07 57.8 34 61.8
Lsat_1_v5_gn_4_30241 Lactuca sativa HOM05D006283 ORTHO05D007727 6.9e-07 57.4 36 61.1
Prupe.1G192800 Prunus persica HOM05D006283 ORTHO05D007727 6.9e-07 57.4 36 63.9
Zm00001eb406800 Zea mays HOM05D006283 ORTHO05D007727 6.9e-07 57.4 36 63.9
Lj3g0020373 Lotus japonicus HOM05D006283 ORTHO05D007727 9.0e-07 57.0 36 63.9
MD04G1040100 Malus domestica HOM05D006283 ORTHO05D007727 9.0e-07 57.0 36 63.9
Sed0010312 Sechium edule HOM05D006283 ORTHO05D007727 9.0e-07 57.0 75 45.3
Aqoxy2G04092 Aquilegia oxysepala HOM05D006283 ORTHO05D007727 1.2e-06 56.6 36 63.9
Lalb_Chr03g0026141 Lupinus albus HOM05D006283 ORTHO05D007727 1.2e-06 56.6 75 42.7
CSS0022675 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 1.5e-06 56.2 31 74.2
CSS0026672 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 1.5e-06 56.2 31 74.2
HanXRQChr16g0525531 Helianthus annuus HOM05D006283 ORTHO05D007727 1.5e-06 56.2 85 40.0
ATR0824G015 Amborella trichopoda HOM05D006283 ORTHO05D007727 2.0e-06 55.8 33 63.6
ClCG07G015660 Citrullus lanatus HOM05D006283 ORTHO05D007727 2.0e-06 55.8 56 46.4
Sed0022341 Sechium edule HOM05D006283 ORTHO05D007727 2.6e-06 55.5 36 63.9
unitig_747.g21679 Utricularia gibba HOM05D006283 ORTHO05D007727 2.6e-06 55.5 33 69.7
CARHR169780 Cardamine hirsuta HOM05D006283 ORTHO05D007727 3.4e-06 55.1 36 61.1
Sp5g03750 Schrenkiella parvula HOM05D006283 ORTHO05D007727 3.4e-06 55.1 36 61.1
HPP92_009172 Vanilla planifolia HOM05D006283 ORTHO05D007727 4.4e-06 54.7 33 60.6
AT3G59390 Arabidopsis thaliana HOM05D006283 ORTHO05D007727 5.8e-06 54.3 36 58.3
Aa31LG10G13740 Aethionema arabicum HOM05D006283 ORTHO05D007727 7.6e-06 53.9 36 61.1
A07p24630 Brassica napus HOM05D006283 ORTHO05D007727 9.9e-06 53.5 36 58.3
C06p26110 Brassica napus HOM05D006283 ORTHO05D007727 9.9e-06 53.5 36 58.3
BolC6t37776H Brassica oleracea HOM05D006283 ORTHO05D007727 9.9e-06 53.5 36 58.3
BraA07t30108Z Brassica rapa HOM05D006283 ORTHO05D007727 9.9e-06 53.5 36 58.3
Thhalv10006168m.g Eutrema salsugineum HOM05D006283 ORTHO05D007727 9.9e-06 53.5 36 58.3
THA.LOC104803704 Tarenaya hassleriana HOM05D006283 ORTHO05D007727 9.9e-06 53.5 36 55.6


User provided reference genes

Program Settings