Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.07g201790 Amaranthus hybridus HOM05D005895 ORTHO05D007916 4.0e-33 144.1 67 100.0
Ah.03g133150 Amaranthus hybridus HOM05D005895 ORTHO05D007916 5.1e-28 127.1 66 87.9
EL10Ac6g13787 Beta vulgaris HOM05D005895 ORTHO05D007916 1.3e-26 122.5 66 83.3
Atru.chr11.2117 Acer truncatum HOM05D005895 ORTHO05D007916 2.1e-26 121.7 66 81.8
Atru.chr11.2133 Acer truncatum HOM05D005895 ORTHO05D007916 2.8e-26 121.3 66 81.8
Glyma.08G283100 Glycine max HOM05D005895 ORTHO05D007916 2.8e-26 121.3 66 81.8
Ciclev10030909m.g Citrus clementina HOM05D005895 ORTHO05D007916 3.6e-26 120.9 66 81.8
Phvul.003G063900 Phaseolus vulgaris HOM05D005895 ORTHO05D007916 3.6e-26 120.9 66 80.3
CANSAT01G2589 Cannabis sativa HOM05D005895 ORTHO05D007916 4.8e-26 120.6 66 81.8
TPR.G34672 Trifolium pratense HOM05D005895 ORTHO05D007916 4.8e-26 120.6 66 80.3
AUR62005446 Chenopodium quinoa HOM05D005895 ORTHO05D007916 6.2e-26 120.2 66 81.8
AUR62024296 Chenopodium quinoa HOM05D005895 ORTHO05D007916 6.2e-26 120.2 66 81.8
Psat0s3772g0040 Pisum sativum HOM05D005895 ORTHO05D007916 6.2e-26 120.2 66 80.3
HPP92_003081 Vanilla planifolia HOM05D005895 ORTHO05D007916 8.1e-26 119.8 66 80.3
Dinv24803 Davidia involucrata HOM05D005895 ORTHO05D007916 1.1e-25 119.4 66 80.3
PGR119G2505 Punica granatum HOM05D005895 ORTHO05D007916 1.1e-25 119.4 66 80.3
CSS0018548 Camellia sinensis var. sinensis HOM05D005895 ORTHO05D007916 1.4e-25 119.0 66 78.8
QL03p058522 Quercus lobata HOM05D005895 ORTHO05D007916 1.4e-25 119.0 66 78.8
Ca_22578_v3 Cicer arietinum L. HOM05D005895 ORTHO05D007916 1.8e-25 118.6 66 77.3
Zm00001eb231230 Zea mays HOM05D005895 ORTHO05D007916 1.8e-25 118.6 66 78.8
CiPaw.05G183400 Carya illinoinensis HOM05D005895 ORTHO05D007916 2.4e-25 118.2 66 78.8
Eucgr.H02516 Eucalyptus grandis HOM05D005895 ORTHO05D007916 2.4e-25 118.2 66 78.8
Medtr8g069525 Medicago truncatula HOM05D005895 ORTHO05D007916 2.4e-25 118.2 66 78.8
Hund06020 Selenicereus undatus HOM05D005895 ORTHO05D007916 2.4e-25 118.2 66 80.3
CARHR063780 Cardamine hirsuta HOM05D005895 ORTHO05D007916 3.1e-25 117.9 66 80.3
Manes.13G025800 Manihot esculenta HOM05D005895 ORTHO05D007916 3.1e-25 117.9 66 81.8
VMungo0251G0514 Vigna mungo HOM05D005895 ORTHO05D007916 3.1e-25 117.9 66 80.3
Actinidia27801 Actinidia chinensis HOM05D005895 ORTHO05D007916 4.0e-25 117.5 66 78.8
CAN.G7.20 Capsicum annuum HOM05D005895 ORTHO05D007916 4.0e-25 117.5 66 80.3
Cc04_g11160 Coffea canephora HOM05D005895 ORTHO05D007916 4.0e-25 117.5 66 78.8
Gohir.A04G136400 Gossypium hirsutum HOM05D005895 ORTHO05D007916 4.0e-25 117.5 66 80.3
Gohir.D04G179500 Gossypium hirsutum HOM05D005895 ORTHO05D007916 4.0e-25 117.5 66 80.3
Gorai.012G172600 Gossypium raimondii HOM05D005895 ORTHO05D007916 4.0e-25 117.5 66 80.3
Sopen04g012770 Solanum pennellii HOM05D005895 ORTHO05D007916 4.0e-25 117.5 66 78.8
Manes.12G024300 Manihot esculenta HOM05D005895 ORTHO05D007916 5.3e-25 117.1 65 81.5
Solyc04g025540.3 Solanum lycopersicum HOM05D005895 ORTHO05D007916 5.3e-25 117.1 66 78.8
TAR371G0306 Trochodendron aralioides HOM05D005895 ORTHO05D007916 6.9e-25 116.7 66 77.3
arahy.Tifrunner.gnm1.ann1.0I87EX Arachis hypogaea HOM05D005895 ORTHO05D007916 9.0e-25 116.3 66 78.8
arahy.Tifrunner.gnm1.ann1.LQ91H7 Arachis hypogaea HOM05D005895 ORTHO05D007916 9.0e-25 116.3 66 78.8
COL.COLO4_24246 Corchorus olitorius HOM05D005895 ORTHO05D007916 9.0e-25 116.3 66 78.8
Haze_12237 Corylus avellana HOM05D005895 ORTHO05D007916 9.0e-25 116.3 66 77.3
Oeu059911.1 Olea europaea HOM05D005895 ORTHO05D007916 9.0e-25 116.3 66 78.8
Peaxi162Scf01242g00143 Petunia axillaris HOM05D005895 ORTHO05D007916 9.0e-25 116.3 66 78.8
vmacro01130 Vaccinium macrocarpon HOM05D005895 ORTHO05D007916 9.0e-25 116.3 66 78.8
Cfa009199 Carpinus fangiana HOM05D005895 ORTHO05D007916 1.2e-24 115.9 66 77.3
Lalb_Chr05g0228401 Lupinus albus HOM05D005895 ORTHO05D007916 1.5e-24 115.5 66 78.8
MBI10_g00734_MAGBIO Magnolia biondii HOM05D005895 ORTHO05D007916 1.5e-24 115.5 66 78.8
Nitab4.5_0000370g0030 Nicotiana tabacum HOM05D005895 ORTHO05D007916 1.5e-24 115.5 66 78.8
Nitab4.5_0006332g0030 Nicotiana tabacum HOM05D005895 ORTHO05D007916 1.5e-24 115.5 66 78.8
SalBow8G2958 Salvia bowleyana HOM05D005895 ORTHO05D007916 1.5e-24 115.5 66 78.8
Thecc.02G257400 Theobroma cacao HOM05D005895 ORTHO05D007916 1.5e-24 115.5 66 78.8
MSTRG.2417 Avicennia marina HOM05D005895 ORTHO05D007916 2.0e-24 115.2 66 78.8
Sp5g25720 Schrenkiella parvula HOM05D005895 ORTHO05D007916 2.0e-24 115.2 66 77.3
TWI36G0590 Tripterygium wilfordii HOM05D005895 ORTHO05D007916 2.0e-24 115.2 66 77.3
Carub.0002s1729 Capsella rubella HOM05D005895 ORTHO05D007916 2.6e-24 114.8 66 78.8
ECA233G5390 Erigeron canadensis HOM05D005895 ORTHO05D007916 2.6e-24 114.8 66 78.8
Lj4g0008127 Lotus japonicus HOM05D005895 ORTHO05D007916 2.6e-24 114.8 66 78.8
PSO017G6602 Papaver somniferum HOM05D005895 ORTHO05D007916 2.6e-24 114.8 66 77.3
PSO478G2260 Papaver somniferum HOM05D005895 ORTHO05D007916 2.6e-24 114.8 66 77.3
AL2G29960 Arabidopsis lyrata HOM05D005895 ORTHO05D007916 3.4e-24 114.4 66 77.3
THA.LOC104818151 Tarenaya hassleriana HOM05D005895 ORTHO05D007916 3.4e-24 114.4 66 77.3
THA.LOC104822982 Tarenaya hassleriana HOM05D005895 ORTHO05D007916 3.4e-24 114.4 66 77.3
Aa31LG4G10380 Aethionema arabicum HOM05D005895 ORTHO05D007916 4.5e-24 114.0 66 78.8
Cpa.g.sc33.4 Carica papaya HOM05D005895 ORTHO05D007916 4.5e-24 114.0 66 75.8
Migut.E00194 Erythranthe guttata HOM05D005895 ORTHO05D007916 5.8e-24 113.6 65 80.0
Lsat_1_v5_gn_8_150700 Lactuca sativa HOM05D005895 ORTHO05D007916 5.8e-24 113.6 66 77.3
ClCG05G025660 Citrullus lanatus HOM05D005895 ORTHO05D007916 7.6e-24 113.2 66 77.3
MELO3C011963.2 Cucumis melo HOM05D005895 ORTHO05D007916 7.6e-24 113.2 66 77.3
HanXRQChr08g0208071 Helianthus annuus HOM05D005895 ORTHO05D007916 7.6e-24 113.2 66 77.3
AT1G70570 Arabidopsis thaliana HOM05D005895 ORTHO05D007916 9.9e-24 112.8 66 78.8
Gohir.D02G159600 Gossypium hirsutum HOM05D005895 ORTHO05D007916 9.9e-24 112.8 66 78.8
Gorai.005G179700 Gossypium raimondii HOM05D005895 ORTHO05D007916 9.9e-24 112.8 66 78.8
MD16G1098900 Malus domestica HOM05D005895 ORTHO05D007916 9.9e-24 112.8 66 77.3
Potri.010G044900 Populus trichocarpa HOM05D005895 ORTHO05D007916 1.3e-23 112.5 66 77.3
ATR0585G083 Amborella trichopoda HOM05D005895 ORTHO05D007916 1.7e-23 112.1 66 75.8
BcaB05g24593 Brassica carinata HOM05D005895 ORTHO05D007916 1.7e-23 112.1 66 75.8
Thhalv10018314m.g Eutrema salsugineum HOM05D005895 ORTHO05D007916 1.7e-23 112.1 66 75.8
FvH4_4g25910 Fragaria vesca HOM05D005895 ORTHO05D007916 1.7e-23 112.1 66 75.8
FAN12G1268 Fragaria x ananassa HOM05D005895 ORTHO05D007916 1.7e-23 112.1 66 75.8
FAN12G2739 Fragaria x ananassa HOM05D005895 ORTHO05D007916 1.7e-23 112.1 66 75.8
FAN17G0264 Fragaria x ananassa HOM05D005895 ORTHO05D007916 1.7e-23 112.1 66 75.8
FAN18G3006 Fragaria x ananassa HOM05D005895 ORTHO05D007916 1.7e-23 112.1 66 75.8
Lj6A811T72 Lonicera japonica HOM05D005895 ORTHO05D007916 1.7e-23 112.1 66 75.8
MD13G1098000 Malus domestica HOM05D005895 ORTHO05D007916 1.7e-23 112.1 66 75.8
Prupe.1G247400 Prunus persica HOM05D005895 ORTHO05D007916 1.7e-23 112.1 66 75.8
RcHm_v2.0_Chr4g0433361 Rosa chinensis HOM05D005895 ORTHO05D007916 1.7e-23 112.1 66 75.8
BcaC03g15207 Brassica carinata HOM05D005895 ORTHO05D007916 2.2e-23 111.7 66 75.8
A02p16660 Brassica napus HOM05D005895 ORTHO05D007916 2.2e-23 111.7 66 75.8
C02p27920 Brassica napus HOM05D005895 ORTHO05D007916 2.2e-23 111.7 66 75.8
BolC2t08837H Brassica oleracea HOM05D005895 ORTHO05D007916 2.2e-23 111.7 66 75.8
BraA02t06722Z Brassica rapa HOM05D005895 ORTHO05D007916 2.2e-23 111.7 66 75.8
CsaV3_5G031240 Cucumis sativus L. HOM05D005895 ORTHO05D007916 2.2e-23 111.7 66 75.8
DCAR_007061 Daucus carota HOM05D005895 ORTHO05D007916 2.9e-23 111.3 66 74.2
GSVIVG01004086001 Vitis vinifera HOM05D005895 ORTHO05D007916 3.8e-23 110.9 66 75.8
Sed0009772 Sechium edule HOM05D005895 ORTHO05D007916 4.9e-23 110.5 66 75.8
Sed0023548 Sechium edule HOM05D005895 ORTHO05D007916 4.9e-23 110.5 66 75.8
Sc04g0009430 Simmondsia chinensis HOM05D005895 ORTHO05D007916 4.9e-23 110.5 66 74.2
FAN07G1086 Fragaria x ananassa HOM05D005895 ORTHO05D007916 1.9e-22 108.6 66 74.2
Mapoly0129s0050 Marchantia polymorpha HOM05D005895 ORTHO05D007916 1.9e-22 108.6 66 74.2
Aqoxy5G03807 Aquilegia oxysepala HOM05D005895 ORTHO05D007916 2.4e-22 108.2 66 71.2
Gohir.A03G136300 Gossypium hirsutum HOM05D005895 ORTHO05D007916 3.2e-22 107.8 63 76.2
Nn4g22655 Nelumbo nucifera HOM05D005895 ORTHO05D007916 3.2e-22 107.8 66 74.2
Aqoxy3G01161 Aquilegia oxysepala HOM05D005895 ORTHO05D007916 5.4e-22 107.1 66 71.2
SHI17741 Sapria himalayana HOM05D000002 ORTHO05D000001 7.1e-22 106.7 66 72.7
Os02g0131200 Oryza sativa ssp. japonica HOM05D005895 ORTHO05D007916 3.5e-21 104.4 66 72.7
Sabra10G0023200 Salix brachista HOM05D005895 ORTHO05D007916 1.0e-20 102.8 80 63.8
unitig_52.g17177 Utricularia gibba HOM05D005895 ORTHO05D007916 1.3e-20 102.4 66 74.2
AagrBONN_evm.TU.Sc2ySwM_368.1304 Anthoceros agrestis HOM05D005895 ORTHO05D007916 5.1e-20 100.5 66 68.2
SMO119G0060 Selaginella moellendorffii HOM05D005895 ORTHO05D007916 1.9e-19 98.6 65 69.2
Pp3c12_14340 Physcomitrium patens HOM05D005895 ORTHO05D007916 4.3e-19 97.4 66 68.2
DCAR_028023 Daucus carota HOM05D005895 ORTHO05D007916 5.6e-19 97.1 60 73.3
CBR_g37586 Chara braunii HOM05D000019 ORTHO05D000048 3.1e-17 91.3 66 62.1
Pp3c10_19590 Physcomitrium patens HOM05D005895 ORTHO05D007916 4.0e-17 90.9 66 63.6
FAN22G0931 Fragaria x ananassa HOM05D005895 ORTHO05D007916 3.8e-15 84.3 66 63.6
SEGI_24305 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 1.1e-11 72.8 46 67.4
Duzib251G0200 Durio zibethinus HOM05D005895 ORTHO05D007916 3.2e-06 54.7 37 64.9


User provided reference genes

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