Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.07g201260 Amaranthus hybridus HOM05D001237 ORTHO05D009110 3.1e-184 648.3 319 100.0
AUR62007400 Chenopodium quinoa HOM05D001237 ORTHO05D009110 2.2e-137 492.7 316 79.7
EL10Ac5g11946 Beta vulgaris HOM05D001237 ORTHO05D009110 6.6e-134 481.1 314 78.7
Nitab4.5_0001033g0010 Nicotiana tabacum HOM05D001237 ORTHO05D009110 9.3e-120 434.1 257 82.9
Duzib084G0831 Durio zibethinus HOM05D001237 ORTHO05D009110 1.6e-119 433.3 320 69.1
Nitab4.5_0002735g0030 Nicotiana tabacum HOM05D001237 ORTHO05D009110 2.1e-119 433.0 257 82.5
Thecc.03G315000 Theobroma cacao HOM05D001237 ORTHO05D009110 2.1e-119 433.0 271 79.7
CiPaw.12G070700 Carya illinoinensis HOM05D001237 ORTHO05D009110 2.7e-119 432.6 257 82.1
Nn3g19221 Nelumbo nucifera HOM05D001237 ORTHO05D009110 6.0e-119 431.4 257 80.9
GSVIVG01022633001 Vitis vinifera HOM05D001237 ORTHO05D009110 6.0e-119 431.4 254 82.7
Gohir.A08G151200 Gossypium hirsutum HOM05D001237 ORTHO05D009110 1.0e-118 430.6 282 76.6
Sopen08g024630 Solanum pennellii HOM05D001237 ORTHO05D009110 1.3e-118 430.3 257 82.1
Sc07g0008510 Simmondsia chinensis HOM05D001237 ORTHO05D009110 3.0e-118 429.1 262 81.3
Solyc08g075990.3 Solanum lycopersicum HOM05D001237 ORTHO05D009110 3.9e-118 428.7 257 81.7
CAN.G773.2 Capsicum annuum HOM05D001237 ORTHO05D009110 6.6e-118 427.9 257 81.3
THA.LOC104812764 Tarenaya hassleriana HOM05D001237 ORTHO05D009110 8.7e-118 427.6 311 69.8
Migut.E01337 Erythranthe guttata HOM05D001237 ORTHO05D009110 1.1e-117 427.2 257 80.5
Prupe.5G022700 Prunus persica HOM05D001237 ORTHO05D009110 1.1e-117 427.2 263 79.1
Gorai.004G179700 Gossypium raimondii HOM05D001237 ORTHO05D009110 1.5e-117 426.8 257 82.5
MD00G1000600 Malus domestica HOM05D001237 ORTHO05D009110 4.3e-117 425.2 288 73.3
Manes.17G008800 Manihot esculenta HOM05D001237 ORTHO05D009110 5.6e-117 424.9 292 73.6
PGR042G3955 Punica granatum HOM05D001237 ORTHO05D009110 5.6e-117 424.9 257 80.9
Potri.003G100300 Populus trichocarpa HOM05D001237 ORTHO05D009110 1.3e-116 423.7 257 81.3
TAR629G2165 Trochodendron aralioides HOM05D001237 ORTHO05D009110 1.3e-116 423.7 257 79.4
ECA233G0844 Erigeron canadensis HOM05D001237 ORTHO05D009110 1.6e-116 423.3 258 79.1
Aqoxy3G02614 Aquilegia oxysepala HOM05D001237 ORTHO05D009110 4.8e-116 421.8 257 79.8
Actinidia18147 Actinidia chinensis HOM05D001237 ORTHO05D009110 8.1e-116 421.0 320 68.4
DCAR_024946 Daucus carota HOM05D001577 ORTHO05D009110 8.1e-116 421.0 254 80.3
Eucgr.E01249 Eucalyptus grandis HOM05D001237 ORTHO05D009110 1.1e-115 420.6 253 81.4
CANSAT25G2402 Cannabis sativa HOM05D001237 ORTHO05D009110 1.4e-115 420.2 257 80.5
CsaV3_3G001140 Cucumis sativus L. HOM05D001237 ORTHO05D009110 1.4e-115 420.2 257 79.4
Phvul.002G132200 Phaseolus vulgaris HOM05D001237 ORTHO05D009110 1.4e-115 420.2 320 68.1
Cpa.g.sc24.66 Carica papaya HOM05D001237 ORTHO05D009110 1.8e-115 419.9 257 79.0
AT5G48790 Arabidopsis thaliana HOM05D001237 ORTHO05D009110 3.1e-115 419.1 298 71.5
vmacro22924 Vaccinium macrocarpon HOM05D001237 ORTHO05D009110 3.1e-115 419.1 288 72.6
FAN08G1241 Fragaria x ananassa HOM05D001237 ORTHO05D009110 4.0e-115 418.7 257 78.2
Lj8A324T105 Lonicera japonica HOM05D001237 ORTHO05D009110 4.0e-115 418.7 269 77.0
Atru.chr6.1547 Acer truncatum HOM05D001237 ORTHO05D009110 9.0e-115 417.5 257 80.2
Carub.0008s0852 Capsella rubella HOM05D001237 ORTHO05D009110 9.0e-115 417.5 299 71.9
RcHm_v2.0_Chr7g0213081 Rosa chinensis HOM05D001237 ORTHO05D009110 9.0e-115 417.5 257 78.6
COL.COLO4_27340 Corchorus olitorius HOM05D001237 ORTHO05D009110 1.2e-114 417.2 316 67.7
FAN18G3541 Fragaria x ananassa HOM05D001237 ORTHO05D009110 1.2e-114 417.2 257 78.2
VMungo1215G0366 Vigna mungo HOM05D001237 ORTHO05D000217 1.2e-114 417.2 258 79.1
Cc00_g24190 Coffea canephora HOM05D001237 ORTHO05D009110 1.5e-114 416.8 257 79.4
Rhsim07G0137000 Rhododendron simsii HOM05D001237 ORTHO05D009110 2.6e-114 416.0 261 78.9
FAN18G4185 Fragaria x ananassa HOM05D001237 ORTHO05D009110 3.4e-114 415.6 257 77.8
Lj2g0015654 Lotus japonicus HOM05D001237 ORTHO05D009110 3.4e-114 415.6 258 78.7
Cfa012569 Carpinus fangiana HOM05D001237 ORTHO05D009110 4.4e-114 415.2 257 78.6
FvH4_5g23760 Fragaria vesca HOM05D001237 ORTHO05D009110 4.4e-114 415.2 257 77.8
Hma1.2p1_0979F.1_g243590 Hydrangea macrophylla HOM05D001237 ORTHO05D009110 5.8e-114 414.8 277 74.4
Sed0014021 Sechium edule HOM05D001237 ORTHO05D009110 5.8e-114 414.8 257 77.8
AL8G21880 Arabidopsis lyrata HOM05D001237 ORTHO05D009110 1.3e-113 413.7 300 70.3
Oeu038592.1 Olea europaea HOM05D001237 ORTHO05D009110 1.3e-113 413.7 257 78.6
TPR.G29137 Trifolium pratense HOM05D001237 ORTHO05D009110 2.9e-113 412.5 258 77.5
MELO3C013804.2 Cucumis melo HOM05D001237 ORTHO05D009110 3.8e-113 412.1 268 76.5
Lalb_Chr05g0215521 Lupinus albus HOM05D001237 ORTHO05D009110 3.8e-113 412.1 260 77.7
Medtr5g027220 Medicago truncatula HOM05D001237 ORTHO05D009110 5.4e-112 408.3 254 78.0
A06p38920 Brassica napus HOM05D001237 ORTHO05D009110 7.1e-112 407.9 267 74.9
Psat2g141080 Pisum sativum HOM05D001237 ORTHO05D009110 9.3e-112 407.5 254 77.2
ATR0829G072 Amborella trichopoda HOM05D001237 ORTHO05D009110 1.2e-111 407.1 257 76.7
Zm00001eb208900 Zea mays HOM05D001237 ORTHO05D009110 3.5e-111 405.6 260 76.2
BraA06t26806Z Brassica rapa HOM05D001237 ORTHO05D009110 1.0e-110 404.1 267 74.2
C07p39410 Brassica napus HOM05D001237 ORTHO05D009110 1.3e-110 403.7 267 74.2
Thhalv10004626m.g Eutrema salsugineum HOM05D001237 ORTHO05D009110 3.0e-110 402.5 262 75.6
Sp2g19180 Schrenkiella parvula HOM05D001237 ORTHO05D009110 3.0e-110 402.5 293 70.3
Aa31LG9G15560 Aethionema arabicum HOM05D001237 ORTHO05D009110 5.1e-110 401.7 273 73.6
Peaxi162Scf00408g00416 Petunia axillaris HOM05D001237 ORTHO05D009110 6.6e-110 401.4 284 73.2
CSS0010822 Camellia sinensis var. sinensis HOM05D001237 ORTHO05D009110 8.7e-110 401.0 267 75.7
PSO782G3536 Papaver somniferum HOM05D001237 ORTHO05D009110 2.5e-109 399.4 255 74.9
Ca_25144_v3 Cicer arietinum L. HOM05D001237 ORTHO05D000217 4.3e-109 398.7 275 72.7
BolC7t44460H Brassica oleracea HOM05D001237 ORTHO05D009110 2.0e-106 389.8 257 73.5
Lsat_1_v5_gn_6_17621 Lactuca sativa HOM05D001237 ORTHO05D009110 7.6e-106 387.9 301 65.4
Dinv15842 Davidia involucrata HOM05D001237 ORTHO05D009110 9.9e-106 387.5 218 84.4
Glyma.01G147700 Glycine max HOM05D001237 ORTHO05D009110 6.4e-105 384.8 258 73.6
CDE02G0540 Ceratophyllum demersum HOM05D001237 ORTHO05D009110 2.3e-102 376.3 225 79.6
Glyma.20G094800 Glycine max HOM05D001237 ORTHO05D009110 2.3e-102 376.3 228 79.8
BcaC06g30758 Brassica carinata HOM05D001237 ORTHO05D009110 1.8e-99 366.7 267 69.7
HanXRQChr08g0226791 Helianthus annuus HOM05D001237 ORTHO05D009110 7.6e-98 361.3 241 74.3
Sabra03G0068500 Salix brachista HOM05D001237 ORTHO05D009110 2.5e-96 356.3 267 69.3
CARHR182950 Cardamine hirsuta HOM05D001237 ORTHO05D009110 3.3e-93 345.9 216 77.3
SGA_v2.0_scaffold111G31373 Striga asiatica HOM05D001237 ORTHO05D009110 1.6e-92 343.6 206 81.1
Mapoly0052s0004 Marchantia polymorpha HOM05D001237 ORTHO05D009110 2.6e-90 336.3 256 64.5
ClCG10G001120 Citrullus lanatus HOM05D001237 ORTHO05D009110 1.0e-89 334.3 257 66.9
unitig_747.g21357 Utricularia gibba HOM05D000467 ORTHO05D000379 3.5e-87 325.9 262 64.5
Pp3c12_7180 Physcomitrium patens HOM05D001237 ORTHO05D009110 3.9e-86 322.4 254 60.2
SMO356G0709 Selaginella moellendorffii HOM05D001237 ORTHO05D009110 3.9e-78 295.8 265 52.1
AagrBONN_evm.TU.Sc2ySwM_344.3693 Anthoceros agrestis HOM05D001237 ORTHO05D009110 5.3e-75 285.4 221 59.7
CBR_g18855 Chara braunii HOM05D001237 ORTHO05D009110 3.2e-72 276.2 219 59.8
Hund11115 Selenicereus undatus HOM05D001237 ORTHO05D009110 3.3e-69 266.2 153 86.3
arahy.Tifrunner.gnm1.ann1.3EKV6C Arachis hypogaea HOM05D001237 ORTHO05D009110 2.6e-66 256.5 287 53.0
arahy.Tifrunner.gnm1.ann1.YIEM7C Arachis hypogaea HOM05D001237 ORTHO05D009110 2.6e-66 256.5 287 53.0
Glyma.09G212000 Glycine max HOM05D001237 ORTHO05D009110 5.2e-62 242.3 158 75.3
QL12p001026 Quercus lobata HOM05D001237 ORTHO05D009110 1.7e-60 237.3 140 81.4
SEGI_12758 Sequoiadendron giganteum HOM05D001237 ORTHO05D009110 4.7e-55 219.2 138 73.9
RcHm_v2.0_Chr7g0213121 Rosa chinensis HOM05D001237 ORTHO05D009110 7.0e-51 205.3 252 48.8
Cre04.g212500 Chlamydomonas reinhardtii HOM05D001237 ORTHO05D009110 5.0e-49 199.1 269 42.8
PRCOL_00004822 Prasinoderma coloniale HOM05D001237 ORTHO05D009110 1.1e-43 181.4 271 41.0
HPP92_025933 Vanilla planifolia HOM05D001237 ORTHO05D009110 2.9e-41 173.3 118 72.9
Lju2073A0T61 Lonicera japonica HOM05D001237 ORTHO05D009110 2.5e-40 170.2 115 74.8
MCO15G307 Micromonas commoda HOM05D001237 ORTHO05D009110 2.3e-38 163.7 278 34.9
Sopen09g023280 Solanum pennellii HOM05D001237 ORTHO05D009110 4.0e-38 162.9 98 77.6
Gohir.D08G172350 Gossypium hirsutum HOM05D001237 ORTHO05D009110 2.8e-31 140.2 82 80.5
PRCOL_00006184 Prasinoderma coloniale HOM05D001237 ORTHO05D009110 2.5e-24 117.1 271 30.6
SalBow1G6490 Salvia bowleyana HOM05D001237 ORTHO05D009110 9.5e-24 115.2 74 73.0
MCO12G167 Micromonas commoda HOM05D001237 ORTHO05D009110 3.6e-23 113.2 280 29.3
SEGI_16157 Sequoiadendron giganteum HOM05D001237 ORTHO05D009110 7.8e-18 95.5 84 56.0
Gohir.D08G172400 Gossypium hirsutum HOM05D001237 ORTHO05D009110 1.1e-16 91.7 78 65.4
FAN04G3094 Fragaria x ananassa HOM05D001237 ORTHO05D009110 7.3e-16 89.0 59 72.9
Aa31LG4G3330 Aethionema arabicum HOM05D005969 ORTHO05D007407 1.4e-11 74.7 284 28.2
Sed0009912 Sechium edule HOM05D005969 ORTHO05D007407 2.1e-10 70.9 283 28.3
Sp5g28020 Schrenkiella parvula HOM05D005969 ORTHO05D007407 6.0e-10 69.3 286 28.0
A07p39070 Brassica napus HOM05D005969 ORTHO05D007407 1.3e-09 68.2 286 27.3
C06p47280 Brassica napus HOM05D005969 ORTHO05D007407 1.3e-09 68.2 286 27.3
BolC6t39767H Brassica oleracea HOM05D005969 ORTHO05D007407 1.3e-09 68.2 286 27.3
BraA07t31457Z Brassica rapa HOM05D005969 ORTHO05D007407 1.3e-09 68.2 286 27.3
HanXRQChr04g0099681 Helianthus annuus HOM05D005969 ORTHO05D007407 1.3e-09 68.2 285 26.0
Thhalv10018762m.g Eutrema salsugineum HOM05D005969 ORTHO05D007407 3.9e-09 66.6 286 26.9
THA.LOC104814755 Tarenaya hassleriana HOM05D005969 ORTHO05D007407 3.9e-09 66.6 287 27.2
Aqoxy5G00978 Aquilegia oxysepala HOM05D005969 ORTHO05D007407 8.6e-09 65.5 285 26.0
Ciclev10025812m.g Citrus clementina HOM05D005969 ORTHO05D007407 8.6e-09 65.5 287 25.1
MBI05_g33301_MAGBIO Magnolia biondii HOM05D005969 ORTHO05D007407 8.6e-09 65.5 287 25.8
arahy.Tifrunner.gnm1.ann1.M9PPGY Arachis hypogaea HOM05D005969 ORTHO05D007407 1.9e-08 64.3 286 25.2
Nitab4.5_0008962g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 1.9e-08 64.3 283 25.1
EL10Ac9g22204 Beta vulgaris HOM05D005969 ORTHO05D007407 2.5e-08 63.9 283 26.1
DCAR_021370 Daucus carota HOM05D005969 ORTHO05D007407 2.5e-08 63.9 286 28.0
arahy.Tifrunner.gnm1.ann1.WI8D6W Arachis hypogaea HOM05D005969 ORTHO05D007407 3.3e-08 63.5 288 26.4
Nn6g31679 Nelumbo nucifera HOM05D005969 ORTHO05D007407 3.3e-08 63.5 285 24.6
Thecc.06G042200 Theobroma cacao HOM05D005969 ORTHO05D007407 3.3e-08 63.5 287 25.4
ATR0807G102 Amborella trichopoda HOM05D005969 ORTHO05D007407 4.3e-08 63.2 289 25.3
Nitab4.5_0000886g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 4.3e-08 63.2 283 25.1
Lj3g0024544 Lotus japonicus HOM05D005969 ORTHO05D007407 7.3e-08 62.4 288 25.0
Rhsim08G0203900 Rhododendron simsii HOM05D005969 ORTHO05D007407 9.6e-08 62.0 285 23.9
Cpa.g.sc1250.2 Carica papaya HOM05D005969 ORTHO05D007407 1.2e-07 61.6 287 25.1
Potri.001G044000 Populus trichocarpa HOM05D005969 ORTHO05D007407 1.2e-07 61.6 318 25.2
PGR102G2845 Punica granatum HOM05D005969 ORTHO05D007407 1.2e-07 61.6 289 24.6
Sabra01G0030300 Salix brachista HOM05D005969 ORTHO05D007407 1.6e-07 61.2 318 25.2
Gohir.A05G118900 Gossypium hirsutum HOM05D005969 ORTHO05D007407 2.1e-07 60.8 287 24.7
COL.COLO4_26714 Corchorus olitorius HOM05D005969 ORTHO05D007407 2.8e-07 60.5 287 25.1
TAR628G0900 Trochodendron aralioides HOM05D005969 ORTHO05D007407 2.8e-07 60.5 287 26.1
Eucgr.F03965 Eucalyptus grandis HOM05D005969 ORTHO05D007407 3.6e-07 60.1 286 26.2
HPP92_025491 Vanilla planifolia HOM05D005969 ORTHO05D007407 4.7e-07 59.7 292 25.0
FvH4_6g28580 Fragaria vesca HOM05D005969 ORTHO05D007407 6.2e-07 59.3 289 24.9
Phvul.010G161700 Phaseolus vulgaris HOM05D005969 ORTHO05D007407 1.1e-06 58.5 289 24.2
SGA_v2.0_scaffold37G14696 Striga asiatica HOM05D005969 ORTHO05D007407 1.1e-06 58.5 290 24.5
FAN02G2588 Fragaria x ananassa HOM05D005969 ORTHO05D007407 1.4e-06 58.2 289 24.9
FAN05G1215 Fragaria x ananassa HOM05D005969 ORTHO05D007407 1.4e-06 58.2 283 25.4
PGSC0003DMG402028489 Solanum tuberosum HOM05D005969 ORTHO05D007407 2.4e-06 57.4 284 25.7
vmacro14221 Vaccinium macrocarpon HOM05D001237 ORTHO05D009110 2.4e-06 57.4 41 70.7
PSO675G4447 Papaver somniferum HOM05D005969 ORTHO05D007407 4.0e-06 56.6 324 25.3


User provided reference genes

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