Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.07g201200 Amaranthus hybridus HOM05D007357 ORTHO05D009314 8.7e-97 357.1 192 100.0
AUR62007392 Chenopodium quinoa HOM05D007357 ORTHO05D009314 5.1e-57 224.9 175 70.3
AUR62044266 Chenopodium quinoa HOM05D007357 ORTHO05D009314 7.4e-56 221.1 176 69.3
AUR62027337 Chenopodium quinoa HOM05D007357 ORTHO05D009314 2.1e-50 203.0 184 63.0
EL10Ac5g11952 Beta vulgaris HOM05D000153 ORTHO05D000118 5.5e-43 178.3 190 59.5
Actinidia14748 Actinidia chinensis HOM05D007357 ORTHO05D009314 9.7e-40 167.5 201 52.7
CSS0024010 Camellia sinensis var. sinensis HOM05D007357 ORTHO05D009314 7.0e-38 161.4 202 51.0
Rhsim07G0138300 Rhododendron simsii HOM05D007357 ORTHO05D009314 7.0e-38 161.4 195 49.7
Sc07g0008390 Simmondsia chinensis HOM05D007357 ORTHO05D009314 5.0e-36 155.2 202 50.0
Nitab4.5_0001033g0080 Nicotiana tabacum HOM05D007357 ORTHO05D009314 1.9e-35 153.3 207 48.8
Prupe.5G019800 Prunus persica HOM05D007357 ORTHO05D009314 2.5e-35 152.9 130 62.3
Haze_08047 Corylus avellana HOM05D007357 ORTHO05D009314 4.2e-35 152.1 196 49.0
Phvul.002G128100 Phaseolus vulgaris HOM05D007357 ORTHO05D009314 1.6e-34 150.2 193 48.2
Sopen08g024580 Solanum pennellii HOM05D007357 ORTHO05D009314 1.6e-34 150.2 205 47.8
VMungo1215G1709 Vigna mungo HOM05D007357 ORTHO05D009314 3.6e-34 149.1 128 60.2
Cc08_g05250 Coffea canephora HOM05D007357 ORTHO05D009314 6.1e-34 148.3 128 62.5
PGSC0003DMG400030879 Solanum tuberosum HOM05D007357 ORTHO05D009314 6.1e-34 148.3 205 45.4
CsaV3_3G030320 Cucumis sativus L. HOM05D007357 ORTHO05D009314 1.0e-33 147.5 199 46.2
TAR629G3058 Trochodendron aralioides HOM05D007357 ORTHO05D009314 1.8e-33 146.7 204 49.0
Peaxi162Scf00408g00712 Petunia axillaris HOM05D007357 ORTHO05D009314 2.3e-33 146.4 207 45.9
QL02p024644 Quercus lobata HOM05D007357 ORTHO05D009314 4.0e-33 145.6 183 47.5
MD06G1015900 Malus domestica HOM05D007357 ORTHO05D009314 2.6e-32 142.9 119 63.0
RcHm_v2.0_Chr7g0213521 Rosa chinensis HOM05D007357 ORTHO05D009314 3.3e-32 142.5 135 56.3
COL.COLO4_16848 Corchorus olitorius HOM05D007357 ORTHO05D009314 5.7e-32 141.7 191 46.6
arahy.Tifrunner.gnm1.ann1.0Q5JCD Arachis hypogaea HOM05D007357 ORTHO05D009314 7.5e-32 141.4 129 59.7
arahy.Tifrunner.gnm1.ann1.JPN6B0 Arachis hypogaea HOM05D007357 ORTHO05D009314 7.5e-32 141.4 129 59.7
TWI34G1682 Tripterygium wilfordii HOM05D007357 ORTHO05D009314 7.5e-32 141.4 193 44.6
FvH4_5g24040 Fragaria vesca HOM05D007357 ORTHO05D009314 1.3e-31 140.6 134 56.7
FAN18G2492 Fragaria x ananassa HOM05D007357 ORTHO05D009314 1.3e-31 140.6 134 56.7
FAN18G4511 Fragaria x ananassa HOM05D007357 ORTHO05D009314 1.3e-31 140.6 134 56.7
CiPaw.11G103400 Carya illinoinensis HOM05D007357 ORTHO05D009314 1.7e-31 140.2 168 48.8
Migut.A00548 Erythranthe guttata HOM05D007357 ORTHO05D009314 2.8e-31 139.4 210 44.8
Gohir.A12G203400 Gossypium hirsutum HOM05D007357 ORTHO05D009314 2.8e-31 139.4 160 50.0
Sed0001819 Sechium edule HOM05D007357 ORTHO05D009314 3.7e-31 139.0 132 55.3
Gorai.008G220900 Gossypium raimondii HOM05D007357 ORTHO05D009314 6.3e-31 138.3 160 50.0
TWI34G1422 Tripterygium wilfordii HOM05D007357 ORTHO05D009314 6.3e-31 138.3 193 44.0
ClCG07G002370 Citrullus lanatus HOM05D007357 ORTHO05D009314 1.4e-30 137.1 201 43.3
Gohir.D12G206000 Gossypium hirsutum HOM05D007357 ORTHO05D009314 1.4e-30 137.1 160 50.6
ECA246G3443 Erigeron canadensis HOM05D007357 ORTHO05D009314 2.4e-30 136.3 206 44.7
FAN08G0560 Fragaria x ananassa HOM05D007357 ORTHO05D009314 2.4e-30 136.3 134 55.2
HanXRQChr17g0539311 Helianthus annuus HOM05D007357 ORTHO05D009314 3.1e-30 136.0 197 41.6
Cfa012604 Carpinus fangiana HOM05D007357 ORTHO05D009314 9.1e-30 134.4 217 42.9
FvH4_3g08760 Fragaria vesca HOM05D007357 ORTHO05D009314 1.6e-29 133.7 134 53.7
Potri.001G132232 Populus trichocarpa HOM05D007357 ORTHO05D009314 1.6e-29 133.7 126 53.2
CAN.G1269.3 Capsicum annuum HOM05D007357 ORTHO05D009314 2.0e-29 133.3 166 47.6
Nn4g25471 Nelumbo nucifera HOM05D007357 ORTHO05D009314 3.5e-29 132.5 130 54.6
Oeu059314.1 Olea europaea HOM05D007357 ORTHO05D009314 7.7e-29 131.3 230 41.3
Manes.17G008100 Manihot esculenta HOM05D007357 ORTHO05D009314 1.3e-28 130.6 146 50.0
PSO063G0202 Papaver somniferum HOM05D007357 ORTHO05D009314 2.2e-28 129.8 121 56.2
Sed0016962 Sechium edule HOM05D007357 ORTHO05D009314 6.5e-28 128.3 198 44.9
Hund11140 Selenicereus undatus HOM05D007357 ORTHO05D009314 1.9e-27 126.7 141 57.4
MELO3C022754.2 Cucumis melo HOM05D007357 ORTHO05D009314 3.2e-27 125.9 201 40.3
Lsat_1_v5_gn_3_28060 Lactuca sativa HOM05D007357 ORTHO05D009314 9.4e-27 124.4 159 46.5
Ciclev10002529m.g Citrus clementina HOM05D007357 ORTHO05D009314 1.2e-26 124.0 119 57.1
CSS0046502 Camellia sinensis var. sinensis HOM05D007357 ORTHO05D009314 1.6e-26 123.6 174 48.3
Aqoxy5G03983 Aquilegia oxysepala HOM05D007357 ORTHO05D009314 3.6e-26 122.5 133 51.9
Lj2g0006468 Lotus japonicus HOM05D007357 ORTHO05D009314 3.6e-26 122.5 192 44.3
ATR0829G081 Amborella trichopoda HOM05D007357 ORTHO05D009314 8.0e-26 121.3 204 36.8
DCAR_008186 Daucus carota HOM05D007357 ORTHO05D009314 1.0e-25 120.9 206 41.7
CDE12G0114 Ceratophyllum demersum HOM05D007357 ORTHO05D009314 6.8e-25 118.2 182 40.1
Glyma.01G150100 Glycine max HOM05D007357 ORTHO05D009314 1.5e-24 117.1 194 41.2
Eucgr.D02601 Eucalyptus grandis HOM05D007357 ORTHO05D009314 3.4e-24 115.9 127 51.2
Cpa.g.sc223.2 Carica papaya HOM05D007357 ORTHO05D009314 4.4e-24 115.5 190 40.5
Solyc08g075930.4 Solanum lycopersicum HOM05D007357 ORTHO05D009314 5.7e-24 115.2 175 44.0
HPP92_025510 Vanilla planifolia HOM05D007357 ORTHO05D009314 5.7e-24 115.2 153 43.1
CANSAT21G2249 Cannabis sativa HOM05D007357 ORTHO05D009314 7.5e-24 114.8 141 50.4
vmacro13970 Vaccinium macrocarpon HOM05D007357 ORTHO05D009314 9.8e-24 114.4 229 39.7
Medtr5g026790 Medicago truncatula HOM05D007357 ORTHO05D009314 2.8e-23 112.8 195 39.0
unitig_32.g10966 Utricularia gibba HOM05D007357 ORTHO05D009314 3.7e-23 112.5 212 39.6
Duzib068G0657 Durio zibethinus HOM05D007357 ORTHO05D009314 1.1e-22 110.9 163 46.0
Oeu042216.1 Olea europaea HOM05D007357 ORTHO05D009314 1.8e-22 110.2 226 37.6
HPP92_025525 Vanilla planifolia HOM05D007357 ORTHO05D009314 1.8e-22 110.2 153 41.2
Os07g0452600 Oryza sativa ssp. japonica HOM05D007357 ORTHO05D009314 7.0e-22 108.2 119 47.9
Hma1.2p1_1179F.1_g264570 Hydrangea macrophylla HOM05D007357 ORTHO05D009314 4.5e-21 105.5 177 41.8
Lalb_Chr05g0215411 Lupinus albus HOM05D007357 ORTHO05D009314 1.3e-20 104.0 120 50.8
MD06G1016600 Malus domestica HOM05D007357 ORTHO05D009314 1.7e-20 103.6 109 54.1
Psat2g142360 Pisum sativum HOM05D007357 ORTHO05D009314 2.3e-20 103.2 191 37.7
Zm00001eb096560 Zea mays HOM05D007357 ORTHO05D009314 2.3e-20 103.2 143 45.5
TPR.G17258 Trifolium pratense HOM05D007357 ORTHO05D009314 3.8e-20 102.4 78 62.8
SGA_v2.0_scaffold89G27413 Striga asiatica HOM05D003343 ORTHO05D003787 2.5e-19 99.8 172 42.4
arahy.Tifrunner.gnm1.ann1.L1IIZH Arachis hypogaea HOM05D007357 ORTHO05D009314 3.3e-19 99.4 102 53.9
Haze_08057 Corylus avellana HOM05D007357 ORTHO05D009314 5.5e-19 98.6 137 48.9
ECA240G0146 Erigeron canadensis HOM05D007357 ORTHO05D009314 5.5e-19 98.6 182 35.7
PSO782G0982 Papaver somniferum HOM05D007357 ORTHO05D009314 1.6e-18 97.1 94 56.4
FAN11G2380 Fragaria x ananassa HOM05D007357 ORTHO05D009314 4.7e-18 95.5 77 61.0
Glyma.09G214200 Glycine max HOM05D007357 ORTHO05D009314 6.1e-18 95.1 129 45.7
Nitab4.5_0001786g0050 Nicotiana tabacum HOM05D007357 ORTHO05D009314 1.4e-17 94.0 190 37.9
Sabra01G0102000 Salix brachista HOM05D007357 ORTHO05D009314 5.2e-17 92.0 74 55.4
TWI79G1144 Tripterygium wilfordii HOM05D007357 ORTHO05D009314 1.2e-16 90.9 115 47.8
Thecc.03G316500 Theobroma cacao HOM05D007357 ORTHO05D009314 2.2e-15 86.7 147 40.8
Os08g0180400 Oryza sativa ssp. japonica HOM05D007357 ORTHO05D009314 7.8e-13 78.2 76 48.7
Zm00001eb171770 Zea mays HOM05D007357 ORTHO05D009314 2.9e-12 76.3 115 33.9
MD06G1016300 Malus domestica HOM05D007357 ORTHO05D009314 3.8e-12 75.9 56 67.9
CSS0020054 Camellia sinensis var. sinensis HOM05D007357 ORTHO05D009314 7.3e-11 71.6 57 64.9
CSS0037866 Camellia sinensis var. sinensis HOM05D007357 ORTHO05D009314 2.8e-10 69.7 57 63.2
arahy.Tifrunner.gnm1.ann1.F5EPY8 Arachis hypogaea HOM05D007357 ORTHO05D009314 1.0e-09 67.8 49 67.3
AagrBONN_evm.TU.Sc2ySwM_228.1692 Anthoceros agrestis HOM05D007357 ORTHO05D009314 1.3e-07 60.8 117 25.6
Ca_25098_v3 Cicer arietinum L. HOM05D007357 ORTHO05D009314 1.3e-07 60.8 105 40.0
Hma1.2p1_0784F.1_g217055 Hydrangea macrophylla HOM05D007357 ORTHO05D009314 1.3e-07 60.8 82 45.1
Hma1.2p1_0944F.1_g240000 Hydrangea macrophylla HOM05D007357 ORTHO05D009314 1.3e-07 60.8 82 45.1
PGR031G1183 Punica granatum HOM05D007357 ORTHO05D009314 2.4e-06 56.6 47 55.3
Nitab4.5_0018136g0010 Nicotiana tabacum HOM05D007357 ORTHO05D009314 3.2e-06 56.2 100 45.0


User provided reference genes

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