Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.07g200600 Amaranthus hybridus HOM05D006310 ORTHO05D007768 1.3e-70 270.4 239 100.0
EL10Ac5g12081 Beta vulgaris HOM05D006310 ORTHO05D007768 8.7e-38 161.4 156 69.9
Hund14348 Selenicereus undatus HOM05D006310 ORTHO05D007768 6.2e-20 102.1 151 49.0
AUR62007306 Chenopodium quinoa HOM05D031544 ORTHO05D001847 2.9e-17 93.2 149 40.9
Actinidia03362 Actinidia chinensis HOM05D006310 ORTHO05D007768 9.3e-16 88.2 166 40.4
CANSAT21G0851 Cannabis sativa HOM05D006310 ORTHO05D007768 6.0e-15 85.5 189 45.5
QL12p004739 Quercus lobata HOM05D006310 ORTHO05D007768 1.9e-13 80.5 192 35.9
Gohir.A08G155500 Gossypium hirsutum HOM05D006310 ORTHO05D007768 4.3e-13 79.3 182 33.0
Gohir.D08G176100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 5.7e-13 79.0 182 33.0
Gorai.004G183900 Gossypium raimondii HOM05D006310 ORTHO05D007768 5.7e-13 79.0 182 33.0
Actinidia25977 Actinidia chinensis HOM05D006310 ORTHO05D007768 1.6e-12 77.4 164 38.4
Medtr5g029910 Medicago truncatula HOM05D006310 ORTHO05D007768 8.2e-12 75.1 168 34.5
CSS0006923 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 1.8e-11 73.9 196 32.1
BcaNung00042 Brassica carinata HOM05D006310 ORTHO05D007768 3.1e-11 73.2 160 39.4
Psat2g137200 Pisum sativum HOM05D006310 ORTHO05D007768 3.1e-11 73.2 164 36.0
COL.COLO4_16996 Corchorus olitorius HOM05D006310 ORTHO05D007768 5.3e-11 72.4 201 28.4
Thhalv10026016m.g Eutrema salsugineum HOM05D006310 ORTHO05D007768 5.3e-11 72.4 188 38.3
Sabra01G0109300 Salix brachista HOM05D006310 ORTHO05D007768 9.0e-11 71.6 187 34.8
MELO3C003424.2 Cucumis melo HOM05D006310 ORTHO05D007768 1.5e-10 70.9 164 34.8
Thecc.03G224800 Theobroma cacao HOM05D006310 ORTHO05D007768 2.6e-10 70.1 207 32.4
Dinv28973 Davidia involucrata HOM05D006310 ORTHO05D007768 3.4e-10 69.7 224 30.4
Potri.001G140500 Populus trichocarpa HOM05D006310 ORTHO05D007768 3.4e-10 69.7 183 32.8
CSS0048597 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 4.5e-10 69.3 199 35.2
Glyma.01G017000 Glycine max HOM05D006310 ORTHO05D007768 4.5e-10 69.3 166 34.9
A01p09980 Brassica napus HOM05D006310 ORTHO05D007768 1.0e-09 68.2 161 39.8
Glyma.09G205800 Glycine max HOM05D006310 ORTHO05D007768 1.0e-09 68.2 167 35.3
Atru.chr6.1649 Acer truncatum HOM05D006310 ORTHO05D007768 2.9e-09 66.6 189 29.6
CiPaw.11G095600 Carya illinoinensis HOM05D006310 ORTHO05D007768 2.9e-09 66.6 170 35.9
Duzib084G0468 Durio zibethinus HOM05D006310 ORTHO05D007768 2.9e-09 66.6 204 33.3
Haze_08202 Corylus avellana HOM05D006310 ORTHO05D007768 5.0e-09 65.9 192 33.3
BcaC09g51583 Brassica carinata HOM05D006310 ORTHO05D007768 6.5e-09 65.5 160 41.9
BolC1t01140H Brassica oleracea HOM05D006310 ORTHO05D007768 6.5e-09 65.5 160 42.5
Oeu006245.1 Olea europaea HOM05D006310 ORTHO05D007768 6.5e-09 65.5 198 31.3
Rhsim11G0017700 Rhododendron simsii HOM05D006310 ORTHO05D007768 6.5e-09 65.5 168 33.9
arahy.Tifrunner.gnm1.ann1.P6RCLW Arachis hypogaea HOM05D006310 ORTHO05D007768 8.5e-09 65.1 172 33.7
arahy.Tifrunner.gnm1.ann1.U64MAA Arachis hypogaea HOM05D006310 ORTHO05D007768 8.5e-09 65.1 172 33.7
Lj2A236G56 Lonicera japonica HOM05D006310 ORTHO05D007768 8.5e-09 65.1 196 36.7
Actinidia14793 Actinidia chinensis HOM05D006310 ORTHO05D007768 1.1e-08 64.7 179 33.0
GSVIVG01013133001 Vitis vinifera HOM05D006310 ORTHO05D007768 1.1e-08 64.7 100 41.0
Hma1.2p1_0303F.1_g118950 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 1.9e-08 63.9 179 39.7
ClCG09G011810 Citrullus lanatus HOM05D006310 ORTHO05D007768 2.5e-08 63.5 176 33.5
Duzib205G0324 Durio zibethinus HOM05D006310 ORTHO05D007768 3.2e-08 63.2 199 30.2
BcaB04g18451 Brassica carinata HOM05D006310 ORTHO05D007768 4.2e-08 62.8 180 37.2
C01p11780 Brassica napus HOM05D006310 ORTHO05D007768 4.2e-08 62.8 160 40.6
FvH4_5g22450 Fragaria vesca HOM05D006310 ORTHO05D007768 4.2e-08 62.8 167 31.7
Actinidia09184 Actinidia chinensis HOM05D006310 ORTHO05D007768 7.2e-08 62.0 177 32.2
CDE06G1171 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 7.2e-08 62.0 153 30.1
FAN18G3281 Fragaria x ananassa HOM05D006310 ORTHO05D007768 7.2e-08 62.0 167 32.3
Cfa012467 Carpinus fangiana HOM05D006310 ORTHO05D007768 9.4e-08 61.6 193 34.7
FAN08G3522 Fragaria x ananassa HOM05D006310 ORTHO05D007768 1.2e-07 61.2 167 32.3
CARHR224680 Cardamine hirsuta HOM05D006310 ORTHO05D007768 1.6e-07 60.8 187 36.4
CsaV3_3G049010 Cucumis sativus L. HOM05D006310 ORTHO05D007768 1.6e-07 60.8 171 32.7
Gorai.007G033000 Gossypium raimondii HOM05D006310 ORTHO05D007768 1.6e-07 60.8 202 31.2
Sp7g16170 Schrenkiella parvula HOM05D006310 ORTHO05D007768 1.6e-07 60.8 182 30.8
AL7G36570 Arabidopsis lyrata HOM05D006310 ORTHO05D007768 2.1e-07 60.5 185 31.4
Manes.15G192960 Manihot esculenta HOM05D006310 ORTHO05D007768 2.1e-07 60.5 193 32.1
Prupe.5G032400 Prunus persica HOM05D006310 ORTHO05D007768 2.7e-07 60.1 168 33.3
PGR031G3884 Punica granatum HOM05D006310 ORTHO05D007768 2.7e-07 60.1 194 29.4
TWI15G1132 Tripterygium wilfordii HOM05D006310 ORTHO05D007768 2.7e-07 60.1 197 30.5
FAN18G0493 Fragaria x ananassa HOM05D006310 ORTHO05D007768 3.6e-07 59.7 165 31.5
Gohir.D11G030100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 3.6e-07 59.7 199 30.7
AT4G17940 Arabidopsis thaliana HOM05D006310 ORTHO05D007768 4.6e-07 59.3 184 31.0
BraA01t00942Z Brassica rapa HOM05D006310 ORTHO05D007768 4.6e-07 59.3 161 41.0
Ca_25198_v3 Cicer arietinum L. HOM05D006310 ORTHO05D007768 6.1e-07 58.9 170 29.4
Nitab4.5_0003625g0020 Nicotiana tabacum HOM05D006310 ORTHO05D007768 6.1e-07 58.9 215 32.1
VMungo1080G0874 Vigna mungo HOM05D006310 ORTHO05D007768 7.9e-07 58.5 185 28.1
Cpa.g.sc90.63 Carica papaya HOM05D006310 ORTHO05D007768 1.0e-06 58.2 196 30.1
A08p13440 Brassica napus HOM05D006310 ORTHO05D007768 1.4e-06 57.8 182 30.2
SGA_v2.0_scaffold20G09266 Striga asiatica HOM05D006310 ORTHO05D007768 1.4e-06 57.8 167 32.9
THA.LOC104827750 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 1.4e-06 57.8 188 32.4
vmacro00314 Vaccinium macrocarpon HOM05D006310 ORTHO05D007768 1.4e-06 57.8 172 30.2
CiPaw.12G065800 Carya illinoinensis HOM05D006310 ORTHO05D007768 1.8e-06 57.4 201 32.3
Eucgr.D02211 Eucalyptus grandis HOM05D006310 ORTHO05D007768 2.3e-06 57.0 86 54.7
Hma1.2p1_1379F.1_g279220 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 2.3e-06 57.0 175 31.4
Lj2g0018875 Lotus japonicus HOM05D006310 ORTHO05D007768 2.3e-06 57.0 180 31.1
Dinv25232 Davidia involucrata HOM05D006310 ORTHO05D007768 3.0e-06 56.6 216 32.9
FAN04G1670 Fragaria x ananassa HOM05D006310 ORTHO05D007768 3.0e-06 56.6 167 31.1
Gohir.A11G031400 Gossypium hirsutum HOM05D006310 ORTHO05D007768 3.0e-06 56.6 199 28.6
MD06G1036900 Malus domestica HOM05D006310 ORTHO05D007768 3.0e-06 56.6 176 32.4
CAN.G298.28 Capsicum annuum HOM05D006310 ORTHO05D007768 3.9e-06 56.2 203 32.0
Psat3g051920 Pisum sativum HOM05D007706 ORTHO05D009593 3.9e-06 56.2 112 39.3
Psat3g053960 Pisum sativum HOM05D007706 ORTHO05D009593 3.9e-06 56.2 146 30.8
BraA08t33321Z Brassica rapa HOM05D006310 ORTHO05D007768 5.1e-06 55.8 182 29.7
BolC8t48532H Brassica oleracea HOM05D006310 ORTHO05D007768 6.7e-06 55.5 186 30.6
THA.LOC104806719 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 8.8e-06 55.1 89 41.6


User provided reference genes

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