Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.07g199480 Amaranthus hybridus HOM05D004191 ORTHO05D060174 1.0e-85 320.1 167 100.0
Ah.09g229650 Amaranthus hybridus HOM05D006491 ORTHO05D008412 2.0e-25 119.8 72 86.1
AUR62039980 Chenopodium quinoa HOM05D006491 ORTHO05D008412 2.9e-16 89.4 96 56.2
AUR62040289 Chenopodium quinoa HOM05D006491 ORTHO05D008412 1.5e-15 87.0 96 56.2
Ah.07g199550 Amaranthus hybridus HOM05D004191 ORTHO05D004887 9.4e-15 84.3 39 97.4
EL10Ac8g18256 Beta vulgaris HOM05D006491 ORTHO05D008412 1.0e-13 80.9 78 56.4
Ciclev10009626m.g Citrus clementina HOM05D004191 ORTHO05D004887 2.6e-12 76.3 39 87.2
Gohir.A09G118400 Gossypium hirsutum HOM05D004191 ORTHO05D004887 2.6e-12 76.3 39 87.2
Gohir.D09G115300 Gossypium hirsutum HOM05D004191 ORTHO05D004887 2.6e-12 76.3 39 87.2
Gorai.006G132900 Gossypium raimondii HOM05D004191 ORTHO05D004887 2.6e-12 76.3 39 87.2
Ah.02g116780 Amaranthus hybridus HOM05D004191 ORTHO05D004887 3.3e-12 75.9 39 87.2
AUR62007507 Chenopodium quinoa HOM05D004191 ORTHO05D004887 4.4e-12 75.5 39 87.2
Eucgr.F00980 Eucalyptus grandis HOM05D004191 ORTHO05D004887 4.4e-12 75.5 39 84.6
COL.COLO4_05062 Corchorus olitorius HOM05D004191 ORTHO05D004887 5.7e-12 75.1 39 84.6
Duzib093G1201 Durio zibethinus HOM05D004191 ORTHO05D004887 5.7e-12 75.1 39 84.6
Sc22g0000820 Simmondsia chinensis HOM05D004191 ORTHO05D004887 5.7e-12 75.1 39 84.6
Thecc.05G140700 Theobroma cacao HOM05D004191 ORTHO05D004887 5.7e-12 75.1 39 84.6
GSVIVG01002004001 Vitis vinifera HOM05D004191 ORTHO05D004887 5.7e-12 75.1 39 84.6
Eucgr.F03430 Eucalyptus grandis HOM05D004191 ORTHO05D004887 7.5e-12 74.7 39 84.6
Lalb_Chr19g0134771 Lupinus albus HOM05D004191 ORTHO05D004887 7.5e-12 74.7 39 84.6
Cpa.g.sc97.62 Carica papaya HOM05D004191 ORTHO05D004887 9.7e-12 74.3 39 84.6
COL.COLO4_37956 Corchorus olitorius HOM05D004191 ORTHO05D004887 9.7e-12 74.3 39 84.6
MBI02_g10101_MAGBIO Magnolia biondii HOM05D004191 ORTHO05D004887 9.7e-12 74.3 39 84.6
Manes.03G123300 Manihot esculenta HOM05D004191 ORTHO05D004887 9.7e-12 74.3 39 82.1
Aa31LG3G10650 Aethionema arabicum HOM05D004191 ORTHO05D004887 1.3e-11 73.9 39 84.6
AL8G30180 Arabidopsis lyrata HOM05D004191 ORTHO05D004887 1.3e-11 73.9 39 84.6
AT5G54750 Arabidopsis thaliana HOM05D004191 ORTHO05D004887 1.3e-11 73.9 39 84.6
EL10Ac5g13057 Beta vulgaris HOM05D004191 ORTHO05D004887 1.3e-11 73.9 39 84.6
BcaB07g30600 Brassica carinata HOM05D004191 ORTHO05D004887 1.3e-11 73.9 39 84.6
CSS0034391 Camellia sinensis var. sinensis HOM05D004191 ORTHO05D004887 1.3e-11 73.9 39 84.6
Carub.0008s1502 Capsella rubella HOM05D004191 ORTHO05D004887 1.3e-11 73.9 39 84.6
CARHR268090 Cardamine hirsuta HOM05D004191 ORTHO05D004887 1.3e-11 73.9 39 84.6
Cfa020410 Carpinus fangiana HOM05D004191 ORTHO05D004887 1.3e-11 73.9 39 82.1
CiPaw.11G184500 Carya illinoinensis HOM05D004191 ORTHO05D004887 1.3e-11 73.9 39 82.1
CiPaw.12G126500 Carya illinoinensis HOM05D004191 ORTHO05D004887 1.3e-11 73.9 39 82.1
Dinv40713 Davidia involucrata HOM05D004191 ORTHO05D004887 1.3e-11 73.9 39 82.1
Thhalv10019192m.g Eutrema salsugineum HOM05D004191 ORTHO05D004887 1.3e-11 73.9 39 84.6
HanXRQChr02g0054141 Helianthus annuus HOM05D004191 ORTHO05D004887 1.3e-11 73.9 39 82.1
PSO170G1932 Papaver somniferum HOM05D004191 ORTHO05D004887 1.3e-11 73.9 39 82.1
PSO675G8300 Papaver somniferum HOM05D004191 ORTHO05D004887 1.3e-11 73.9 39 82.1
PSO782G4612 Papaver somniferum HOM05D004191 ORTHO05D004887 1.3e-11 73.9 39 82.1
Potri.001G418400 Populus trichocarpa HOM05D004191 ORTHO05D004887 1.3e-11 73.9 39 82.1
PGR083G1136 Punica granatum HOM05D004191 ORTHO05D004887 1.3e-11 73.9 39 82.1
QL08p013180 Quercus lobata HOM05D004191 ORTHO05D004887 1.3e-11 73.9 39 82.1
Sabra16G0284100 Salix brachista HOM05D004191 ORTHO05D004887 1.3e-11 73.9 39 82.1
Sp4g10480 Schrenkiella parvula HOM05D004191 ORTHO05D004887 1.3e-11 73.9 39 84.6
SpUn0117_0020 Schrenkiella parvula HOM05D004191 ORTHO05D004887 1.3e-11 73.9 39 84.6
TAR371G0103 Trochodendron aralioides HOM05D004191 ORTHO05D004887 1.3e-11 73.9 39 82.1
ATR0109G002 Amborella trichopoda HOM05D004191 ORTHO05D004887 1.7e-11 73.6 39 82.1
ATR0609G026 Amborella trichopoda HOM05D004191 ORTHO05D004887 1.7e-11 73.6 39 82.1
MD03G1210500 Malus domestica HOM05D004191 ORTHO05D004887 1.7e-11 73.6 39 82.1
MD11G1225200 Malus domestica HOM05D004191 ORTHO05D004887 1.7e-11 73.6 39 82.1
Oeu007633.1 Olea europaea HOM05D004191 ORTHO05D004887 1.7e-11 73.6 39 82.1
Oeu032442.1 Olea europaea HOM05D004191 ORTHO05D004887 1.7e-11 73.6 39 82.1
TWI38G1569 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 1.7e-11 73.6 39 82.1
arahy.Tifrunner.gnm1.ann1.B9KZG1 Arachis hypogaea HOM05D004191 ORTHO05D004887 2.2e-11 73.2 39 82.1
arahy.Tifrunner.gnm1.ann1.HY89VY Arachis hypogaea HOM05D004191 ORTHO05D004887 2.2e-11 73.2 39 82.1
CANSAT80G0944 Cannabis sativa HOM05D004191 ORTHO05D004887 2.2e-11 73.2 39 76.9
Duzib106G0849 Durio zibethinus HOM05D004191 ORTHO05D004887 2.2e-11 73.2 39 82.1
ECA236G4841 Erigeron canadensis HOM05D004191 ORTHO05D004887 2.2e-11 73.2 39 79.5
FvH4_3g21920 Fragaria vesca HOM05D004191 ORTHO05D004887 2.2e-11 73.2 39 79.5
FAN11G1314 Fragaria x ananassa HOM05D004191 ORTHO05D004887 2.2e-11 73.2 39 79.5
FAN16G1028 Fragaria x ananassa HOM05D004191 ORTHO05D004887 2.2e-11 73.2 39 79.5
FAN21G0017 Fragaria x ananassa HOM05D004191 ORTHO05D004887 2.2e-11 73.2 39 79.5
FAN25G1832 Fragaria x ananassa HOM05D004191 ORTHO05D004887 2.2e-11 73.2 39 79.5
Lsat_1_v5_gn_7_108481 Lactuca sativa HOM05D004191 ORTHO05D004887 2.2e-11 73.2 39 79.5
Lj3g0027602 Lotus japonicus HOM05D004191 ORTHO05D004887 2.2e-11 73.2 39 82.1
Lalb_Chr03g0030141 Lupinus albus HOM05D004191 ORTHO05D004887 2.2e-11 73.2 39 82.1
Prupe.4G204700 Prunus persica HOM05D004191 ORTHO05D004887 2.2e-11 73.2 39 79.5
RcHm_v2.0_Chr5g0037731 Rosa chinensis HOM05D004191 ORTHO05D004887 2.2e-11 73.2 39 79.5
Hund26385 Selenicereus undatus HOM05D006491 ORTHO05D008412 2.2e-11 73.2 76 57.9
THA.LOC104799884 Tarenaya hassleriana HOM05D004191 ORTHO05D004887 2.2e-11 73.2 39 84.6
TWI39G0061 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 2.2e-11 73.2 39 79.5
Aqoxy4G00334 Aquilegia oxysepala HOM05D004191 ORTHO05D004887 2.8e-11 72.8 39 79.5
CAN.G1110.10 Capsicum annuum HOM05D004191 ORTHO05D004887 2.8e-11 72.8 39 79.5
Lj1A865T18 Lonicera japonica HOM05D004191 ORTHO05D004887 2.8e-11 72.8 39 79.5
Peaxi162Scf01434g00020 Petunia axillaris HOM05D004191 ORTHO05D004887 2.8e-11 72.8 39 79.5
Hund11592 Selenicereus undatus HOM05D004191 ORTHO05D004887 2.8e-11 72.8 39 79.5
TAR626G0300 Trochodendron aralioides HOM05D004191 ORTHO05D004887 2.8e-11 72.8 39 79.5
Actinidia19733 Actinidia chinensis HOM05D004191 ORTHO05D004887 3.7e-11 72.4 39 79.5
Actinidia34670 Actinidia chinensis HOM05D004191 ORTHO05D004887 3.7e-11 72.4 39 79.5
BcaB07g31034 Brassica carinata HOM05D004191 ORTHO05D004887 3.7e-11 72.4 39 82.1
A09p20070 Brassica napus HOM05D004191 ORTHO05D004887 3.7e-11 72.4 39 82.1
C09p25460 Brassica napus HOM05D004191 ORTHO05D004887 3.7e-11 72.4 39 82.1
BolC9t55449H Brassica oleracea HOM05D004191 ORTHO05D004887 3.7e-11 72.4 39 82.1
BraA09t37620Z Brassica rapa HOM05D004191 ORTHO05D004887 3.7e-11 72.4 39 82.1
CSS0028201 Camellia sinensis var. sinensis HOM05D004191 ORTHO05D004887 3.7e-11 72.4 39 82.1
CAN.G134.12 Capsicum annuum HOM05D004191 ORTHO05D004887 3.7e-11 72.4 39 79.5
ClCG05G014740 Citrullus lanatus HOM05D004191 ORTHO05D004887 3.7e-11 72.4 39 79.5
MELO3C018102.2 Cucumis melo HOM05D004191 ORTHO05D004887 3.7e-11 72.4 39 79.5
CsaV3_3G023130 Cucumis sativus L. HOM05D004191 ORTHO05D004887 3.7e-11 72.4 39 79.5
HanXRQChr11g0332951 Helianthus annuus HOM05D004191 ORTHO05D004887 3.7e-11 72.4 39 79.5
Nitab4.5_0002229g0200 Nicotiana tabacum HOM05D004191 ORTHO05D004887 3.7e-11 72.4 39 79.5
Nitab4.5_0002342g0090 Nicotiana tabacum HOM05D004191 ORTHO05D004887 3.7e-11 72.4 39 79.5
Nitab4.5_0002838g0150 Nicotiana tabacum HOM05D004191 ORTHO05D004887 3.7e-11 72.4 39 79.5
Nitab4.5_0005420g0050 Nicotiana tabacum HOM05D004191 ORTHO05D004887 3.7e-11 72.4 39 79.5
Peaxi162Scf00082g00016 Petunia axillaris HOM05D004191 ORTHO05D004887 3.7e-11 72.4 39 79.5
Sed0012224 Sechium edule HOM05D004191 ORTHO05D004887 3.7e-11 72.4 39 82.1
Solyc10g006490.3 Solanum lycopersicum HOM05D004191 ORTHO05D004887 3.7e-11 72.4 39 79.5
Sopen10g002440 Solanum pennellii HOM05D004191 ORTHO05D004887 3.7e-11 72.4 39 79.5
PGSC0003DMG400005405 Solanum tuberosum HOM05D004191 ORTHO05D004887 3.7e-11 72.4 39 79.5
PGSC0003DMG400029125 Solanum tuberosum HOM05D004191 ORTHO05D004887 3.7e-11 72.4 39 79.5
SGA_v2.0_scaffold416G51230 Striga asiatica HOM05D004191 ORTHO05D004887 3.7e-11 72.4 39 79.5
Zm00001eb433090 Zea mays HOM05D004191 ORTHO05D004887 3.7e-11 72.4 39 76.9
Migut.H01854 Erythranthe guttata HOM05D004191 ORTHO05D004887 4.8e-11 72.0 39 79.5
SalBow7G2717 Salvia bowleyana HOM05D004191 ORTHO05D004887 4.8e-11 72.0 39 79.5
HPP92_013205 Vanilla planifolia HOM05D001003 ORTHO05D004887 4.8e-11 72.0 39 76.9
Cc05_g13280 Coffea canephora HOM05D004191 ORTHO05D004887 6.3e-11 71.6 39 76.9
PGR031G0276 Punica granatum HOM05D004191 ORTHO05D004887 6.3e-11 71.6 39 79.5
Glyma.06G269400 Glycine max HOM05D004191 ORTHO05D004887 8.2e-11 71.2 39 79.5
Glyma.12G135200 Glycine max HOM05D004191 ORTHO05D004887 8.2e-11 71.2 39 79.5
Os03g0402000 Oryza sativa ssp. japonica HOM05D004191 ORTHO05D004887 8.2e-11 71.2 39 76.9
Os07g0642300 Oryza sativa ssp. japonica HOM05D004191 ORTHO05D004887 8.2e-11 71.2 39 76.9
Sed0000628 Sechium edule HOM05D004191 ORTHO05D004887 8.2e-11 71.2 39 79.5
Sc15g0001730 Simmondsia chinensis HOM05D004191 ORTHO05D004887 8.2e-11 71.2 39 76.9
Solyc01g096530.3 Solanum lycopersicum HOM05D004191 ORTHO05D004887 8.2e-11 71.2 39 76.9
VMungo1127G0852 Vigna mungo HOM05D004191 ORTHO05D004887 8.2e-11 71.2 39 79.5
Hma1.2p1_0049F.1_g028640 Hydrangea macrophylla HOM05D004191 ORTHO05D004887 1.1e-10 70.9 39 79.5
Phvul.011G139700 Phaseolus vulgaris HOM05D004191 ORTHO05D004887 1.1e-10 70.9 39 79.5
Hund24114 Selenicereus undatus HOM05D004191 ORTHO05D004887 1.1e-10 70.9 39 76.9
TWI38G1856 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 1.1e-10 70.9 39 76.9
vmacro16476 Vaccinium macrocarpon HOM05D004191 ORTHO05D004887 1.4e-10 70.5 39 76.9
Zm00001eb067130 Zea mays HOM05D004191 ORTHO05D004887 1.4e-10 70.5 39 74.4
MSTRG.6892 Avicennia marina HOM05D004191 ORTHO05D004887 1.8e-10 70.1 39 76.9
Manes.15G076000 Manihot esculenta HOM05D004191 ORTHO05D004887 1.8e-10 70.1 39 74.4
Rhsim12G0150700 Rhododendron simsii HOM05D004191 ORTHO05D004887 1.8e-10 70.1 39 76.9
Ca_18852_v3 Cicer arietinum L. HOM05D004191 ORTHO05D004887 2.4e-10 69.7 39 76.9
Medtr4g081170 Medicago truncatula HOM05D004191 ORTHO05D004887 2.4e-10 69.7 39 76.9
Medtr8g027700 Medicago truncatula HOM05D004191 ORTHO05D004887 2.4e-10 69.7 39 76.9
Psat7g161320 Pisum sativum HOM05D004191 ORTHO05D004887 2.4e-10 69.7 39 76.9
TPR.G24299 Trifolium pratense HOM05D004191 ORTHO05D004887 2.4e-10 69.7 39 76.9
TPR.G25893 Trifolium pratense HOM05D004191 ORTHO05D004887 2.4e-10 69.7 39 76.9
SEGI_28528 Sequoiadendron giganteum HOM05D004191 ORTHO05D004887 3.1e-10 69.3 39 74.4
SGA_v2.0_scaffold24G10288 Striga asiatica HOM05D004191 ORTHO05D004887 3.1e-10 69.3 39 79.5
MSTRG.12958 Avicennia marina HOM05D004191 ORTHO05D004887 4.1e-10 68.9 39 74.4
CDE02G0163 Ceratophyllum demersum HOM05D004191 ORTHO05D004887 4.1e-10 68.9 39 74.4
Peaxi162Scf01475g00001 Petunia axillaris HOM05D004191 ORTHO05D004887 5.3e-10 68.6 39 74.4
Peaxi162Scf08257g00003 Petunia axillaris HOM05D004191 ORTHO05D004887 5.3e-10 68.6 39 74.4
Sopen01g040260 Solanum pennellii HOM05D004191 ORTHO05D004887 9.1e-10 67.8 39 74.4
AUR62030012 Chenopodium quinoa HOM05D004191 ORTHO05D004887 4.5e-09 65.5 35 82.9
Cpa.g.sc2.173 Carica papaya HOM05D004191 ORTHO05D004887 5.9e-09 65.1 38 76.3
Mapoly0006s0106 Marchantia polymorpha HOM05D004191 ORTHO05D004887 5.9e-09 65.1 39 66.7
SMO165G0074 Selaginella moellendorffii HOM05D004191 ORTHO05D004887 7.7e-09 64.7 39 66.7
arahy.Tifrunner.gnm1.ann1.T6DWBF Arachis hypogaea HOM05D004191 ORTHO05D004887 1.7e-08 63.5 35 74.3
AagrBONN_evm.TU.Sc2ySwM_344.5599 Anthoceros agrestis HOM05D004191 ORTHO05D004887 2.9e-08 62.8 39 66.7
AagrBONN_evm.TU.Sc2ySwM_344.5600 Anthoceros agrestis HOM05D004191 ORTHO05D004887 2.9e-08 62.8 39 66.7
AagrBONN_evm.TU.Sc2ySwM_344.5601 Anthoceros agrestis HOM05D004191 ORTHO05D004887 2.9e-08 62.8 39 66.7
AagrBONN_evm.TU.Sc2ySwM_362.1587 Anthoceros agrestis HOM05D004191 ORTHO05D004887 2.9e-08 62.8 39 66.7
Migut.M01809 Erythranthe guttata HOM05D004191 ORTHO05D004887 1.9e-07 60.1 35 71.4
Pp3c6_29730 Physcomitrium patens HOM05D004191 ORTHO05D004887 4.2e-07 58.9 39 59.0
CBR_g9060 Chara braunii HOM05D004191 ORTHO05D004887 2.7e-06 56.2 39 61.5
unitig_0.g2386 Utricularia gibba HOM05D004191 ORTHO05D004887 2.7e-06 56.2 37 67.6
TWI63G0546 Tripterygium wilfordii HOM05D006491 ORTHO05D008412 4.7e-06 55.5 77 46.8


User provided reference genes

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