Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.07g198410 Amaranthus hybridus HOM05D003598 ORTHO05D004198 6.2e-94 347.4 173 100.0
Ah.01g001620 Amaranthus hybridus HOM05D003598 ORTHO05D004198 1.6e-65 253.1 127 96.9
AUR62000767 Chenopodium quinoa HOM05D003598 ORTHO05D004198 4.0e-61 238.4 127 91.3
Ah.01g012930 Amaranthus hybridus HOM05D003598 ORTHO05D004198 5.3e-61 238.0 127 89.8
AUR62015205 Chenopodium quinoa HOM05D003598 ORTHO05D004198 5.3e-61 238.0 127 90.6
EL10Ac9g22923 Beta vulgaris HOM05D003598 ORTHO05D004198 4.5e-60 235.0 128 87.5
AUR62017668 Chenopodium quinoa HOM05D003598 ORTHO05D004198 1.0e-59 233.8 127 89.0
AUR62005202 Chenopodium quinoa HOM05D003598 ORTHO05D004198 1.4e-58 229.9 124 88.7
GSVIVG01010181001 Vitis vinifera HOM05D003598 ORTHO05D004198 3.2e-58 228.8 127 85.8
CSS0049191 Camellia sinensis var. sinensis HOM05D003598 ORTHO05D004198 4.2e-58 228.4 128 84.4
SGA_v2.0_scaffold144G35883 Striga asiatica HOM05D003598 ORTHO05D004198 9.3e-58 227.3 129 85.3
Dinv32105 Davidia involucrata HOM05D003598 ORTHO05D004198 2.1e-57 226.1 127 87.4
TAR629G0796 Trochodendron aralioides HOM05D003598 ORTHO05D004198 2.7e-57 225.7 127 85.0
Lj6A721G58 Lonicera japonica HOM05D003598 ORTHO05D004198 4.6e-57 224.9 127 86.6
SGA_v2.0_scaffold277G46719 Striga asiatica HOM05D003598 ORTHO05D004198 4.6e-57 224.9 127 85.0
Hma1.2p1_0218F.1_g092550 Hydrangea macrophylla HOM05D003598 ORTHO05D004198 1.3e-56 223.4 127 85.0
Sc20g0002190 Simmondsia chinensis HOM05D003598 ORTHO05D004198 1.3e-56 223.4 126 84.1
TAR371G1198 Trochodendron aralioides HOM05D003598 ORTHO05D004198 3.0e-56 222.2 127 83.5
Duzib133G1064 Durio zibethinus HOM05D003598 ORTHO05D004198 3.9e-56 221.9 127 83.5
MBI03_g24013_MAGBIO Magnolia biondii HOM05D003598 ORTHO05D004198 3.9e-56 221.9 125 85.6
Lsat_1_v5_gn_3_7261 Lactuca sativa HOM05D003598 ORTHO05D004198 5.1e-56 221.5 134 79.9
Rhsim04G0081000 Rhododendron simsii HOM05D003598 ORTHO05D004198 8.7e-56 220.7 128 82.8
Sed0014776 Sechium edule HOM05D003598 ORTHO05D004198 8.7e-56 220.7 127 83.5
Sed0024830 Sechium edule HOM05D003598 ORTHO05D004198 8.7e-56 220.7 127 83.5
QL02p009504 Quercus lobata HOM05D003598 ORTHO05D004198 1.5e-55 219.9 127 85.8
CSS0011637 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D000909 1.9e-55 219.5 130 80.0
CSS0032311 Camellia sinensis var. sinensis HOM05D003598 ORTHO05D004198 2.5e-55 219.2 126 81.7
TWI53G1744 Tripterygium wilfordii HOM05D003598 ORTHO05D004198 2.5e-55 219.2 127 83.5
Atru.chr9.2066 Acer truncatum HOM05D003598 ORTHO05D004198 3.3e-55 218.8 127 84.3
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 5.7e-55 218.0 124 83.9
COL.COLO4_11873 Corchorus olitorius HOM05D003598 ORTHO05D004198 7.4e-55 217.6 134 77.6
DCAR_030401 Daucus carota HOM05D003598 ORTHO05D004198 7.4e-55 217.6 127 80.3
Nn4g24926 Nelumbo nucifera HOM05D003598 ORTHO05D004198 9.6e-55 217.2 127 81.9
Thecc.01G274200 Theobroma cacao HOM05D003598 ORTHO05D004198 9.6e-55 217.2 127 81.1
vmacro09196 Vaccinium macrocarpon HOM05D003598 ORTHO05D004198 9.6e-55 217.2 128 81.2
COL.COLO4_09060 Corchorus olitorius HOM05D003598 ORTHO05D004198 1.3e-54 216.9 127 81.9
Rhsim06G0126100 Rhododendron simsii HOM05D003598 ORTHO05D004198 1.3e-54 216.9 131 80.9
Ciclev10032368m.g Citrus clementina HOM05D003598 ORTHO05D004198 1.6e-54 216.5 127 81.9
Gohir.A11G124700 Gossypium hirsutum HOM05D003598 ORTHO05D004198 1.6e-54 216.5 127 80.3
Gohir.D11G129900 Gossypium hirsutum HOM05D003598 ORTHO05D004198 1.6e-54 216.5 127 80.3
Gorai.007G139000 Gossypium raimondii HOM05D003598 ORTHO05D004198 1.6e-54 216.5 127 80.3
HanXRQChr17g0533671 Helianthus annuus HOM05D003598 ORTHO05D004198 1.6e-54 216.5 134 77.6
Oeu042207.1 Olea europaea HOM05D003598 ORTHO05D004198 1.6e-54 216.5 124 85.5
PGR042G0762 Punica granatum HOM05D003598 ORTHO05D004198 1.6e-54 216.5 134 77.6
TWI77G0411 Tripterygium wilfordii HOM05D003598 ORTHO05D004198 1.6e-54 216.5 127 82.7
Duzib138G0618 Durio zibethinus HOM05D003598 ORTHO05D004198 2.8e-54 215.7 127 80.3
Oeu045722.3 Olea europaea HOM05D003598 ORTHO05D004198 2.8e-54 215.7 124 85.5
THA.LOC104802853 Tarenaya hassleriana HOM05D003598 ORTHO05D004198 2.8e-54 215.7 141 76.6
MSTRG.1768 Avicennia marina HOM05D003598 ORTHO05D004198 4.8e-54 214.9 128 82.8
PSO782G0946 Papaver somniferum HOM05D003598 ORTHO05D004198 4.8e-54 214.9 127 80.3
vmacro12412 Vaccinium macrocarpon HOM05D003598 ORTHO05D004198 4.8e-54 214.9 148 73.6
Hund03395 Selenicereus undatus HOM05D003598 ORTHO05D004198 6.2e-54 214.5 158 69.0
DCAR_002566 Daucus carota HOM05D003598 ORTHO05D004198 8.2e-54 214.2 135 76.3
Migut.E01352 Erythranthe guttata HOM05D003598 ORTHO05D004198 8.2e-54 214.2 128 83.6
PSO063G0008 Papaver somniferum HOM05D003598 ORTHO05D004198 8.2e-54 214.2 127 80.3
Actinidia11173 Actinidia chinensis HOM05D003598 ORTHO05D004198 1.1e-53 213.8 128 79.7
VMungo1127G1291 Vigna mungo HOM05D003598 ORTHO05D004198 1.1e-53 213.8 127 83.5
Gohir.D08G204800 Gossypium hirsutum HOM05D003598 ORTHO05D004198 1.4e-53 213.4 128 79.7
HanXRQChr03g0086691 Helianthus annuus HOM05D003598 ORTHO05D004198 1.8e-53 213.0 134 77.6
THA.LOC104820751 Tarenaya hassleriana HOM05D003598 ORTHO05D004198 1.8e-53 213.0 141 74.5
unitig_899.g14735 Utricularia gibba HOM05D003598 ORTHO05D004198 1.8e-53 213.0 124 83.1
Aqoxy2G02255 Aquilegia oxysepala HOM05D003598 ORTHO05D004198 2.4e-53 212.6 127 78.7
Lalb_Chr03g0024851 Lupinus albus HOM05D003598 ORTHO05D004198 2.4e-53 212.6 127 83.5
Peaxi162Scf00193g00013 Petunia axillaris HOM05D003598 ORTHO05D004198 2.4e-53 212.6 127 82.7
ECA240G3477 Erigeron canadensis HOM05D003598 ORTHO05D004198 3.1e-53 212.2 134 75.4
Gorai.004G216900 Gossypium raimondii HOM05D003598 ORTHO05D004198 3.1e-53 212.2 128 78.9
Aqoxy3G01046 Aquilegia oxysepala HOM05D003598 ORTHO05D004198 4.1e-53 211.8 128 82.0
Cfa013868 Carpinus fangiana HOM05D003598 ORTHO05D004198 4.1e-53 211.8 131 80.9
CiPaw.08G060100 Carya illinoinensis HOM05D003598 ORTHO05D004198 5.3e-53 211.5 127 81.9
Gohir.A08G186600 Gossypium hirsutum HOM05D003598 ORTHO05D004198 5.3e-53 211.5 128 79.7
CAN.G1425.3 Capsicum annuum HOM05D003598 ORTHO05D004198 9.0e-53 210.7 127 82.7
Solyc03g119420.3 Solanum lycopersicum HOM05D003598 ORTHO05D004198 9.0e-53 210.7 127 81.9
Sopen03g038270 Solanum pennellii HOM05D003598 ORTHO05D004198 9.0e-53 210.7 127 81.9
PGSC0003DMG400005723 Solanum tuberosum HOM05D003598 ORTHO05D004198 9.0e-53 210.7 127 81.9
Manes.01G073300 Manihot esculenta HOM05D003598 ORTHO05D004198 1.2e-52 210.3 127 84.3
Potri.005G198900 Populus trichocarpa HOM05D003598 ORTHO05D004198 1.2e-52 210.3 127 84.3
Cpa.g.sc51.45 Carica papaya HOM05D003598 ORTHO05D004198 1.5e-52 209.9 131 77.9
Lj3g0003654 Lotus japonicus HOM05D003598 ORTHO05D004198 1.5e-52 209.9 125 83.2
arahy.Tifrunner.gnm1.ann1.01A9SY Arachis hypogaea HOM05D003598 ORTHO05D004198 2.0e-52 209.5 130 79.2
arahy.Tifrunner.gnm1.ann1.Y4R7AD Arachis hypogaea HOM05D003598 ORTHO05D004198 2.0e-52 209.5 130 79.2
Glyma.11G103000 Glycine max HOM05D003598 ORTHO05D004198 2.6e-52 209.1 127 81.9
MBI06_g36503_MAGBIO Magnolia biondii HOM05D003598 ORTHO05D004198 3.4e-52 208.8 132 75.0
Zm00001eb066470 Zea mays HOM05D003598 ORTHO05D004198 3.4e-52 208.8 144 71.5
MBI06_g34034_MAGBIO Magnolia biondii HOM05D003598 ORTHO05D004198 4.5e-52 208.4 125 79.2
Nitab4.5_0001450g0070 Nicotiana tabacum HOM05D003598 ORTHO05D004198 4.5e-52 208.4 128 80.5
Phvul.L003737 Phaseolus vulgaris HOM05D003598 ORTHO05D004198 4.5e-52 208.4 127 81.1
Potri.002G062200 Populus trichocarpa HOM05D003598 ORTHO05D004198 4.5e-52 208.4 127 82.7
Solyc08g075730.3 Solanum lycopersicum HOM05D003598 ORTHO05D004198 4.5e-52 208.4 127 81.1
Sopen08g024380 Solanum pennellii HOM05D003598 ORTHO05D004198 4.5e-52 208.4 127 81.1
Zm00001eb066420 Zea mays HOM05D003598 ORTHO05D004198 4.5e-52 208.4 127 78.7
ATR0618G278 Amborella trichopoda HOM05D003598 ORTHO05D004198 5.8e-52 208.0 127 78.0
CANSAT64G1690 Cannabis sativa HOM05D003598 ORTHO05D004198 5.8e-52 208.0 128 82.8
CsaV3_3G031510 Cucumis sativus L. HOM05D003598 ORTHO05D004198 5.8e-52 208.0 127 79.5
MELO3C024034.2 Cucumis melo HOM05D003598 ORTHO05D004198 7.6e-52 207.6 127 78.7
Nitab4.5_0002941g0020 Nicotiana tabacum HOM05D003598 ORTHO05D004198 7.6e-52 207.6 127 81.9
Glyma.12G141400 Glycine max HOM05D003598 ORTHO05D004198 1.0e-51 207.2 127 80.3
Ca_03027_v3 Cicer arietinum L. HOM05D003598 ORTHO05D004198 1.3e-51 206.8 127 79.5
Os04g0674400 Oryza sativa ssp. japonica HOM05D003598 ORTHO05D004198 1.3e-51 206.8 127 76.4
Os04g0682050 Oryza sativa ssp. japonica HOM05D003598 ORTHO05D004198 1.7e-51 206.5 127 76.4
PGSC0003DMG400030870 Solanum tuberosum HOM05D003598 ORTHO05D004198 1.7e-51 206.5 127 81.1
Prupe.1G345400 Prunus persica HOM05D003598 ORTHO05D004198 2.2e-51 206.1 127 81.9
SalBow8G4212 Salvia bowleyana HOM05D003598 ORTHO05D004198 2.9e-51 205.7 127 81.9
Hund19574 Selenicereus undatus HOM05D003598 ORTHO05D004198 3.8e-51 205.3 119 83.2
Aa31LG11G11250 Aethionema arabicum HOM05D003598 ORTHO05D004198 5.0e-51 204.9 141 70.2
Cc08_g05000 Coffea canephora HOM05D003598 ORTHO05D004198 1.1e-50 203.8 134 76.9
CiPaw.07G157700 Carya illinoinensis HOM05D003598 ORTHO05D004198 1.9e-50 203.0 127 78.0
Sabra05G0151500 Salix brachista HOM05D003598 ORTHO05D004198 2.5e-50 202.6 134 79.1
Medtr4g074480 Medicago truncatula HOM05D003598 ORTHO05D004198 3.2e-50 202.2 137 73.7
Psat7g173800 Pisum sativum HOM05D003598 ORTHO05D004198 3.2e-50 202.2 144 69.4
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 5.5e-50 201.4 126 81.7
A10p21130 Brassica napus HOM05D003598 ORTHO05D004198 7.1e-50 201.1 134 73.9
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 7.1e-50 201.1 129 80.6
BcaB01g05191 Brassica carinata HOM05D002281 ORTHO05D005599 1.6e-49 199.9 141 68.8
BolC3t13511H Brassica oleracea HOM05D003598 ORTHO05D004198 1.6e-49 199.9 141 68.8
BraA03t10207Z Brassica rapa HOM05D003598 ORTHO05D004198 1.6e-49 199.9 141 68.8
FvH4_4g36731 Fragaria vesca HOM05D003598 ORTHO05D004198 1.6e-49 199.9 129 79.8
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 1.6e-49 199.9 144 73.6
TPR.G32324 Trifolium pratense HOM05D003598 ORTHO05D004198 1.6e-49 199.9 138 71.7
MD13G1007600 Malus domestica HOM05D003598 ORTHO05D004198 2.7e-49 199.1 139 74.8
BcaC04g18694 Brassica carinata HOM05D003598 ORTHO05D004198 4.6e-49 198.4 132 73.5
C03p10310 Brassica napus HOM05D003598 ORTHO05D004198 4.6e-49 198.4 127 74.0
CARHR194630 Cardamine hirsuta HOM05D003598 ORTHO05D004198 4.6e-49 198.4 140 69.3
A03p08820 Brassica napus HOM05D003598 ORTHO05D004198 7.9e-49 197.6 127 74.0
RcHm_v2.0_Chr4g0446451 Rosa chinensis HOM05D003598 ORTHO05D004198 1.0e-48 197.2 129 79.1
AL6G29630 Arabidopsis lyrata HOM05D003598 ORTHO05D004198 1.3e-48 196.8 140 70.0
MD16G1000500 Malus domestica HOM05D003598 ORTHO05D004198 1.3e-48 196.8 139 73.4
Nitab4.5_0001659g0130 Nicotiana tabacum HOM05D003598 ORTHO05D004198 1.8e-48 196.4 148 70.3
Sp6g25920 Schrenkiella parvula HOM05D003598 ORTHO05D004198 1.8e-48 196.4 140 70.0
Medtr4g108000 Medicago truncatula HOM05D003598 ORTHO05D004198 2.3e-48 196.1 133 72.9
HPP92_009730 Vanilla planifolia HOM05D003598 ORTHO05D004198 2.3e-48 196.1 117 82.1
Hund19509 Selenicereus undatus HOM05D003598 ORTHO05D004198 3.9e-48 195.3 115 81.7
Carub.0008s0217 Capsella rubella HOM05D003598 ORTHO05D004198 1.1e-47 193.7 133 73.7
AT5G18400 Arabidopsis thaliana HOM05D003598 ORTHO05D004198 2.5e-47 192.6 140 68.6
Carub.0006s1666 Capsella rubella HOM05D003598 ORTHO05D004198 2.5e-47 192.6 140 69.3
Hund19575 Selenicereus undatus HOM05D003598 ORTHO05D004198 2.5e-47 192.6 115 78.3
Hund31482 Selenicereus undatus HOM05D003598 ORTHO05D004198 5.7e-47 191.4 112 82.1
Nn6g34923 Nelumbo nucifera HOM05D003598 ORTHO05D004198 9.7e-47 190.7 113 78.8
CDE04G2679 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 8.2e-46 187.6 150 60.7
Thhalv10015717m.g Eutrema salsugineum HOM05D003598 ORTHO05D004198 1.4e-45 186.8 143 66.4
SEGI_23700 Sequoiadendron giganteum HOM05D003598 ORTHO05D004198 2.4e-45 186.0 139 69.1
Cc08_g04900 Coffea canephora HOM05D003598 ORTHO05D004198 1.5e-44 183.3 119 78.2
SEGI_19284 Sequoiadendron giganteum HOM05D003598 ORTHO05D004198 1.1e-42 177.2 167 58.7
Sabra02G0050100 Salix brachista HOM05D003598 ORTHO05D004198 1.9e-42 176.4 126 74.6
Cc00_g17080 Coffea canephora HOM05D003598 ORTHO05D004198 5.5e-42 174.9 148 64.9
Sc10g0007060 Simmondsia chinensis HOM05D003598 ORTHO05D004198 5.5e-42 174.9 102 84.3
BolC9t58693H Brassica oleracea HOM05D003598 ORTHO05D004198 9.4e-42 174.1 134 65.7
Dinv05241 Davidia involucrata HOM05D003598 ORTHO05D004198 3.6e-41 172.2 99 84.8
CsaV3_3G032510 Cucumis sativus L. HOM05D003598 ORTHO05D004198 2.3e-40 169.5 97 83.5
CDE05G1904 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 8.8e-40 167.5 118 66.9
Glyma.U018351 Glycine max HOM05D003598 ORTHO05D004198 6.3e-38 161.4 102 78.4
Cc00_g23020 Coffea canephora HOM05D003598 ORTHO05D004198 5.3e-37 158.3 106 78.3
Eucgr.J00852 Eucalyptus grandis HOM05D003598 ORTHO05D004198 6.9e-37 157.9 100 81.0
SGA_v2.0_scaffold49G18286 Striga asiatica HOM05D003598 ORTHO05D004198 9.1e-37 157.5 126 65.9
Haze_22545 Corylus avellana HOM05D003598 ORTHO05D004198 1.5e-36 156.8 106 76.4
SMO367G0289 Selaginella moellendorffii HOM05D003598 ORTHO05D004198 7.7e-36 154.5 158 52.5
Ca_14027_v3 Cicer arietinum L. HOM05D003598 ORTHO05D004198 5.0e-35 151.8 99 78.8
Lsat_1_v5_gn_3_62741 Lactuca sativa HOM05D003598 ORTHO05D004198 2.5e-34 149.4 108 70.4
Prupe.8G036300 Prunus persica HOM05D003598 ORTHO05D004198 7.2e-34 147.9 127 64.6
CDE02G3181 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 9.4e-34 147.5 127 59.1
Mapoly0032s0120 Marchantia polymorpha HOM05D003598 ORTHO05D004198 1.6e-33 146.7 166 50.6
CDE05G0161 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 2.3e-32 142.9 99 67.7
AagrBONN_evm.TU.Sc2ySwM_368.147 Anthoceros agrestis HOM05D003598 ORTHO05D004198 1.1e-31 140.6 130 56.9
BraA10t44179Z Brassica rapa HOM05D001989 ORTHO05D004198 1.1e-31 140.6 105 69.5
RcHm_v2.0_Chr3g0449691 Rosa chinensis HOM05D003598 ORTHO05D004198 3.3e-31 139.0 89 80.9
Pp3c13_7070 Physcomitrium patens HOM05D003598 ORTHO05D004198 2.6e-28 129.4 163 43.6
Cc08_g04800 Coffea canephora HOM05D003598 ORTHO05D004198 4.5e-28 128.6 100 69.0
QL09p042139 Quercus lobata HOM05D003598 ORTHO05D004198 1.1e-26 124.0 72 84.7
CBR_g263 Chara braunii HOM05D003598 ORTHO05D004198 1.5e-26 123.6 164 44.5
Pp3c8_19850 Physcomitrium patens HOM05D003598 ORTHO05D004198 1.9e-26 123.2 162 43.2
Lj1g0005490 Lotus japonicus HOM05D003598 ORTHO05D004198 3.6e-25 119.0 105 65.7
BcaNung04934 Brassica carinata HOM05D003598 ORTHO05D004198 1.4e-24 117.1 81 65.4
ClCG10G011850 Citrullus lanatus HOM05D003598 ORTHO05D004198 1.8e-24 116.7 116 55.2
PRCOL_00002502 Prasinoderma coloniale HOM05D003598 ORTHO05D004198 9.4e-18 94.4 158 38.0
Cre11.g475350 Chlamydomonas reinhardtii HOM05D003598 ORTHO05D004198 3.6e-17 92.4 101 49.5
Actinidia24398 Actinidia chinensis HOM05D003598 ORTHO05D004198 1.4e-16 90.5 53 75.5
Sc06g0004000 Simmondsia chinensis HOM05D003598 ORTHO05D004198 1.7e-14 83.6 53 77.4
Cc00_g26130 Coffea canephora HOM05D003598 ORTHO05D004198 2.4e-13 79.7 71 64.8
Lsat_1_v5_gn_6_87300 Lactuca sativa HOM05D003598 ORTHO05D004198 6.5e-11 71.6 63 57.1
MCO04G029 Micromonas commoda HOM05D003598 ORTHO05D004198 4.7e-09 65.5 57 50.9
Cfa022453 Carpinus fangiana HOM05D003598 ORTHO05D004198 4.0e-08 62.4 142 33.8
TPR.G20575 Trifolium pratense HOM05D003598 ORTHO05D004198 3.4e-07 59.3 104 40.4
Ca_03029_v3 Cicer arietinum L. HOM05D003598 ORTHO05D004198 1.7e-06 57.0 28 85.7
SEGI_32675 Sequoiadendron giganteum HOM05D003598 ORTHO05D004198 2.2e-06 56.6 40 62.5


User provided reference genes

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