Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.07g197300 Amaranthus hybridus HOM05D004436 ORTHO05D005179 3.0e-235 818.1 417 100.0
Ah.08g216510 Amaranthus hybridus HOM05D004436 ORTHO05D005179 1.5e-146 523.5 319 87.5
AUR62009860 Chenopodium quinoa HOM05D004436 ORTHO05D005179 1.2e-130 470.7 407 59.7
EL10Ac7g16378 Beta vulgaris HOM05D004436 ORTHO05D005179 8.6e-126 454.5 420 58.8
AUR62001510 Chenopodium quinoa HOM05D004436 ORTHO05D005179 7.3e-125 451.4 433 55.4
EL10Ac7g16380 Beta vulgaris HOM05D004436 ORTHO05D005179 1.2e-124 450.7 415 58.1
Hund20819 Selenicereus undatus HOM05D004436 ORTHO05D005179 6.7e-110 401.7 414 51.4
Sc12g0010440 Simmondsia chinensis HOM05D004436 ORTHO05D005179 3.1e-107 392.9 408 52.5
Nitab4.5_0000035g0090 Nicotiana tabacum HOM05D004436 ORTHO05D005179 1.9e-96 357.1 409 48.7
Sopen06g018390 Solanum pennellii HOM05D004436 ORTHO05D005179 5.5e-96 355.5 412 47.1
Solyc06g053330.4 Solanum lycopersicum HOM05D004436 ORTHO05D005179 1.6e-95 354.0 406 47.3
Dinv03512 Davidia involucrata HOM05D004436 ORTHO05D005179 8.7e-94 348.2 400 47.0
PGSC0003DMG400016304 Solanum tuberosum HOM05D004436 ORTHO05D005179 1.1e-93 347.8 407 46.9
Nitab4.5_0012713g0010 Nicotiana tabacum HOM05D004436 ORTHO05D005179 1.4e-91 340.9 388 49.0
Oeu044709.1 Olea europaea HOM05D004436 ORTHO05D005179 1.2e-90 337.8 402 46.8
vmacro22224 Vaccinium macrocarpon HOM05D004436 ORTHO05D005179 2.0e-90 337.0 392 48.5
CAN.G540.4 Capsicum annuum HOM05D004436 ORTHO05D005179 3.4e-90 336.3 393 47.3
Actinidia32167 Actinidia chinensis HOM05D004436 ORTHO05D005179 4.5e-90 335.9 404 46.8
Lj5A40G74 Lonicera japonica HOM05D004436 ORTHO05D005179 4.5e-90 335.9 394 46.7
Dinv30366 Davidia involucrata HOM05D004436 ORTHO05D005179 5.9e-90 335.5 355 49.9
CiPaw.01G221800 Carya illinoinensis HOM05D004436 ORTHO05D005179 1.1e-88 331.3 397 46.6
Hma1.2p1_0496F.1_g166100 Hydrangea macrophylla HOM05D004436 ORTHO05D005179 4.2e-88 329.3 408 44.1
Peaxi162Scf00943g00014 Petunia axillaris HOM05D004436 ORTHO05D005179 5.5e-88 328.9 401 46.4
TAR375G0086 Trochodendron aralioides HOM05D004436 ORTHO05D005179 5.5e-88 328.9 412 44.4
CiPaw.05G181900 Carya illinoinensis HOM05D004436 ORTHO05D005179 7.2e-88 328.6 397 46.3
CSS0015890 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 1.6e-87 327.4 390 46.2
GSVIVG01016817001 Vitis vinifera HOM05D004436 ORTHO05D005179 3.6e-87 326.2 393 46.1
Prupe.3G044800 Prunus persica HOM05D004436 ORTHO05D005179 4.6e-87 325.9 408 44.9
Peaxi162Scf00647g00219 Petunia axillaris HOM05D004436 ORTHO05D005179 1.1e-85 321.2 389 45.8
RcHm_v2.0_Chr2g0144531 Rosa chinensis HOM05D004436 ORTHO05D005179 1.1e-85 321.2 399 45.6
Glyma.15G165300 Glycine max HOM05D004436 ORTHO05D005179 1.9e-85 320.5 386 44.6
Oeu047041.1 Olea europaea HOM05D004436 ORTHO05D005179 2.5e-85 320.1 387 46.3
Eucgr.F03167 Eucalyptus grandis HOM05D004436 ORTHO05D005179 3.3e-85 319.7 412 44.4
Rhsim08G0236100 Rhododendron simsii HOM05D004436 ORTHO05D005179 3.3e-85 319.7 403 45.2
Lj6g0016044 Lotus japonicus HOM05D004436 ORTHO05D005179 1.3e-84 317.8 432 41.2
MSTRG.22562 Avicennia marina HOM05D004436 ORTHO05D005179 4.8e-84 315.8 413 45.3
PGR119G1065 Punica granatum HOM05D004436 ORTHO05D005179 9.1e-83 311.6 415 42.4
Haze_15997 Corylus avellana HOM05D004436 ORTHO05D005179 1.2e-82 311.2 434 41.9
MD09G1187900 Malus domestica HOM05D004436 ORTHO05D005179 1.2e-82 311.2 427 42.2
CsaV3_7G034640 Cucumis sativus L. HOM05D004436 ORTHO05D005179 2.0e-82 310.5 402 44.0
Ciclev10025597m.g Citrus clementina HOM05D004436 ORTHO05D005179 3.4e-82 309.7 396 44.2
CSS0033207 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 4.5e-82 309.3 390 44.6
Lalb_Chr08g0233321 Lupinus albus HOM05D004436 ORTHO05D005179 1.3e-81 307.8 415 41.2
FAN02G3564 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.7e-81 307.4 399 43.9
FAN05G5343 Fragaria x ananassa HOM05D004436 ORTHO05D005179 2.2e-81 307.0 399 43.6
FAN09G2135 Fragaria x ananassa HOM05D004436 ORTHO05D005179 2.9e-81 306.6 399 43.9
Sed0007780 Sechium edule HOM05D004436 ORTHO05D005179 3.8e-81 306.2 426 44.4
FvH4_6g34180 Fragaria vesca HOM05D004436 ORTHO05D005179 5.0e-81 305.8 399 44.4
HanXRQChr10g0312341 Helianthus annuus HOM05D004436 ORTHO05D005179 8.5e-81 305.1 395 43.8
MELO3C024372.2 Cucumis melo HOM05D004436 ORTHO05D005179 1.1e-80 304.7 423 43.3
Medtr7g104810 Medicago truncatula HOM05D004436 ORTHO05D005179 9.4e-80 301.6 398 43.0
ClCG09G000840 Citrullus lanatus HOM05D004436 ORTHO05D005179 1.6e-79 300.8 426 43.0
FAN26G0630 Fragaria x ananassa HOM05D004436 ORTHO05D005179 3.6e-79 299.7 403 42.4
Migut.D00948 Erythranthe guttata HOM05D004436 ORTHO05D005179 7.9e-79 298.5 434 42.2
Sp3g12180 Schrenkiella parvula HOM05D004436 ORTHO05D005179 7.9e-79 298.5 429 40.3
CANSAT56G1493 Cannabis sativa HOM05D004436 ORTHO05D005179 1.0e-78 298.1 389 44.2
arahy.Tifrunner.gnm1.ann1.0TY6IG Arachis hypogaea HOM05D004436 ORTHO05D005179 3.0e-78 296.6 393 42.7
Manes.04G142200 Manihot esculenta HOM05D004436 ORTHO05D005179 3.0e-78 296.6 415 42.9
arahy.Tifrunner.gnm1.ann1.4RDH3B Arachis hypogaea HOM05D004436 ORTHO05D005179 3.9e-78 296.2 393 42.5
Cpa.g.sc25.86 Carica papaya HOM05D004436 ORTHO05D005179 5.1e-78 295.8 413 41.9
Medtr2g037880 Medicago truncatula HOM05D004436 ORTHO05D005179 5.1e-78 295.8 389 40.9
Thecc.03G227200 Theobroma cacao HOM05D004436 ORTHO05D005179 5.1e-78 295.8 450 39.1
Lsat_1_v5_gn_5_135221 Lactuca sativa HOM05D004436 ORTHO05D005179 6.7e-78 295.4 413 41.9
Psat1g144000 Pisum sativum HOM05D004436 ORTHO05D005179 5.7e-77 292.4 421 40.6
FAN14G2695 Fragaria x ananassa HOM05D004436 ORTHO05D005179 9.7e-77 291.6 435 40.9
Duzib205G0267 Durio zibethinus HOM05D004436 ORTHO05D005179 1.3e-76 291.2 422 41.5
Phvul.009G236700 Phaseolus vulgaris HOM05D004436 ORTHO05D005179 4.8e-76 289.3 391 41.9
TPR.G13789 Trifolium pratense HOM05D004436 ORTHO05D005179 8.2e-76 288.5 391 43.0
Medtr2g037460 Medicago truncatula HOM05D004436 ORTHO05D005179 1.1e-75 288.1 414 40.8
ECA234G4408 Erigeron canadensis HOM05D004436 ORTHO05D005179 1.4e-75 287.7 412 41.7
Thhalv10020760m.g Eutrema salsugineum HOM05D004436 ORTHO05D005179 1.8e-75 287.3 431 39.0
Sed0020704 Sechium edule HOM05D004436 ORTHO05D005179 2.4e-75 287.0 392 43.1
Aa31LG8G1130 Aethionema arabicum HOM05D004436 ORTHO05D005179 5.3e-75 285.8 433 40.2
Cc04_g01610 Coffea canephora HOM05D004436 ORTHO05D005179 1.2e-74 284.6 319 49.5
THA.LOC104804933 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 2.0e-74 283.9 399 41.6
Manes.11G023100 Manihot esculenta HOM05D004436 ORTHO05D005179 2.6e-74 283.5 438 40.2
Ca_02096_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 3.4e-74 283.1 389 40.6
Gorai.003G182300 Gossypium raimondii HOM05D004436 ORTHO05D005179 7.7e-74 282.0 441 38.1
Gohir.D03G171700 Gossypium hirsutum HOM05D004436 ORTHO05D005179 1.0e-73 281.6 441 37.9
TWI23G0436 Tripterygium wilfordii HOM05D004436 ORTHO05D005179 1.0e-73 281.6 393 43.0
Gohir.A03G000500 Gossypium hirsutum HOM05D004436 ORTHO05D005179 2.9e-73 280.0 441 38.1
Aqoxy2G00706 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 3.8e-73 279.6 398 40.7
RcHm_v2.0_Chr2g0166351 Rosa chinensis HOM05D004436 ORTHO05D005179 3.8e-73 279.6 394 43.1
DCAR_026403 Daucus carota HOM05D004436 ORTHO05D005179 5.0e-73 279.3 396 40.2
SGA_v2.0_scaffold68G22895 Striga asiatica HOM05D004436 ORTHO05D005179 1.4e-72 277.7 384 40.6
FvH4_6g47280 Fragaria vesca HOM05D004436 ORTHO05D005179 3.2e-72 276.6 411 41.8
Nitab4.5_0004287g0020 Nicotiana tabacum HOM05D004436 ORTHO05D005179 3.2e-72 276.6 387 42.6
Atru.chr1.3808 Acer truncatum HOM05D004436 ORTHO05D005179 7.2e-72 275.4 376 42.6
Potri.001G198600 Populus trichocarpa HOM05D004436 ORTHO05D005179 1.2e-71 274.6 418 39.0
AT3G13940 Arabidopsis thaliana HOM05D004436 ORTHO05D005179 2.1e-71 273.9 394 38.8
Carub.0003s1351 Capsella rubella HOM05D004436 ORTHO05D005179 1.4e-70 271.2 420 36.2
COL.COLO4_17027 Corchorus olitorius HOM05D004436 ORTHO05D005179 2.3e-70 270.4 353 43.9
COL.COLO4_30482 Corchorus olitorius HOM05D004436 ORTHO05D005179 3.9e-70 269.6 425 40.2
AL3G26120 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 5.2e-70 269.2 410 37.6
Rhsim10G0150900 Rhododendron simsii HOM05D004436 ORTHO05D005179 8.8e-70 268.5 488 36.7
BcaC09g48383 Brassica carinata HOM05D004436 ORTHO05D005179 2.2e-68 263.8 394 39.1
C01p50660 Brassica napus HOM05D004436 ORTHO05D005179 2.2e-68 263.8 394 39.1
BolC1t05015H Brassica oleracea HOM05D004436 ORTHO05D005179 2.2e-68 263.8 394 39.1
Sabra01G0155800 Salix brachista HOM05D004436 ORTHO05D005179 2.8e-68 263.5 432 37.0
A01p39710 Brassica napus HOM05D004436 ORTHO05D005179 1.8e-67 260.8 390 39.0
Peaxi162Scf00060g02815 Petunia axillaris HOM05D004436 ORTHO05D005179 1.8e-67 260.8 407 40.5
BraA01t04010Z Brassica rapa HOM05D004436 ORTHO05D005179 2.4e-67 260.4 390 39.0
BcaB04g20967 Brassica carinata HOM05D004436 ORTHO05D005179 3.5e-66 256.5 399 37.8
CARHR088750 Cardamine hirsuta HOM05D004436 ORTHO05D005179 2.2e-65 253.8 402 37.6
PSO724G1089 Papaver somniferum HOM05D004436 ORTHO05D005179 2.1e-63 247.3 398 37.9
PSO135G0558 Papaver somniferum HOM05D004436 ORTHO05D005179 1.0e-62 245.0 402 37.3
CDE07G0038 Ceratophyllum demersum HOM05D004436 ORTHO05D005179 1.2e-61 241.5 417 37.4
unitig_26.g9010 Utricularia gibba HOM05D000572 ORTHO05D002399 3.1e-59 233.4 398 37.4
Actinidia21779 Actinidia chinensis HOM05D004436 ORTHO05D005179 1.6e-58 231.1 402 36.6
MD17G1172300 Malus domestica HOM05D004436 ORTHO05D005179 5.9e-58 229.2 306 43.1
QL05p009436 Quercus lobata HOM05D004436 ORTHO05D005179 5.0e-57 226.1 638 28.4
FAN24G2018 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.0e-54 218.4 383 37.1
Nn6g35749 Nelumbo nucifera HOM05D004436 ORTHO05D005179 4.0e-54 216.5 405 35.3
ATR0762G049 Amborella trichopoda HOM05D004436 ORTHO05D005179 1.4e-51 208.0 455 33.4
HPP92_009424 Vanilla planifolia HOM05D004436 ORTHO05D005179 2.4e-51 207.2 401 35.9
TPR.G16505 Trifolium pratense HOM05D004436 ORTHO05D005179 3.8e-49 199.9 217 46.1
FvH4_2g14600 Fragaria vesca HOM05D004436 ORTHO05D005179 5.5e-48 196.1 298 40.6
Lj6g0018808 Lotus japonicus HOM05D004436 ORTHO05D005179 6.1e-47 192.6 249 43.0
Zm00001eb166800 Zea mays HOM05D004436 ORTHO05D005179 2.7e-42 177.2 393 32.8
Os11g0615100 Oryza sativa ssp. japonica HOM05D004436 ORTHO05D005179 2.5e-40 170.6 421 32.3
Ca_27339_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 6.1e-39 166.0 279 36.9
Carub.0003s3547 Capsella rubella HOM05D004436 ORTHO05D005179 1.8e-38 164.5 226 42.5
DCAR_023423 Daucus carota HOM05D004436 ORTHO05D005179 5.2e-38 162.9 235 40.4
FAN14G5104 Fragaria x ananassa HOM05D002326 ORTHO05D005179 1.2e-37 161.8 234 39.7
Aqoxy7G00272 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 2.6e-37 160.6 207 40.6
AUR62000997 Chenopodium quinoa HOM05D004436 ORTHO05D005179 8.3e-36 155.6 135 62.2
AagrBONN_evm.TU.Sc2ySwM_368.2707 Anthoceros agrestis HOM05D004436 ORTHO05D005179 9.2e-35 152.1 463 28.9
SEGI_28110 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 3.5e-34 150.2 298 34.2
FAN27G1625 Fragaria x ananassa HOM05D004436 ORTHO05D005179 5.0e-33 146.4 379 31.7
Pp3c8_24340 Physcomitrium patens HOM05D004436 ORTHO05D005179 7.3e-32 142.5 448 28.1
THA.LOC104822769 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 7.5e-29 132.5 232 35.8
Aqoxy2G02914 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 1.2e-26 125.2 138 50.0
Oeu004353.1 Olea europaea HOM05D004436 ORTHO05D005179 6.6e-25 119.4 110 51.8
SEGI_22335 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 9.5e-24 115.5 292 31.2
Mapoly0063s0055 Marchantia polymorpha HOM05D004436 ORTHO05D005179 1.1e-22 112.1 324 29.9
Dinv21190 Davidia involucrata HOM05D004436 ORTHO05D005179 7.5e-21 105.9 109 48.6
FAN09G3702 Fragaria x ananassa HOM05D002326 ORTHO05D005179 1.3e-20 105.1 395 27.6
FAN15G1241 Fragaria x ananassa HOM05D004436 ORTHO05D005179 2.2e-20 104.4 396 28.0
FAN20G3048 Fragaria x ananassa HOM05D004436 ORTHO05D005179 9.2e-19 99.0 241 31.1
FAN02G4131 Fragaria x ananassa HOM05D002326 ORTHO05D005179 1.6e-18 98.2 395 26.6
PGSC0003DMG400002436 Solanum tuberosum HOM05D004436 ORTHO05D005179 1.6e-18 98.2 91 51.6
CBR_g45967 Chara braunii HOM05D004436 ORTHO05D005179 1.7e-17 94.7 437 25.6
Haze_06394 Corylus avellana HOM05D004436 ORTHO05D005179 1.9e-16 91.3 195 36.9
Aqoxy2G02915 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 3.3e-16 90.5 127 40.9
AL1G64440 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 4.4e-13 80.1 155 36.8
THA.LOC104822775 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 5.4e-11 73.2 135 32.6
ATR0185G001 Amborella trichopoda HOM05D004436 ORTHO05D005179 9.2e-11 72.4 174 32.2
Peaxi162Scf01131g00007 Petunia axillaris HOM05D004436 ORTHO05D005179 1.0e-09 68.9 82 41.5
TPR.G16496 Trifolium pratense HOM05D004436 ORTHO05D005179 3.9e-09 67.0 162 34.0


User provided reference genes

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