Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.07g196520 Amaranthus hybridus HOM05D006627 ORTHO05D007753 0.0e+00 2607.0 1342 100.0
AUR62010719 Chenopodium quinoa HOM05D006627 ORTHO05D007753 0.0e+00 1281.9 1376 55.0
AUR62027265 Chenopodium quinoa HOM05D006627 ORTHO05D007753 0.0e+00 1256.5 1376 54.1
EL10Ac5g12810 Beta vulgaris HOM05D006627 ORTHO05D007753 0.0e+00 1191.4 1316 53.6
AUR62027266 Chenopodium quinoa HOM05D006627 ORTHO05D007753 0.0e+00 1088.2 1312 50.8
EL10Ac5g12809 Beta vulgaris HOM05D006627 ORTHO05D007753 0.0e+00 1080.1 1195 54.6
EL10Ac5g12811 Beta vulgaris HOM05D006627 ORTHO05D007753 2.0e-285 986.5 1381 46.8
Hund11448 Selenicereus undatus HOM05D006627 ORTHO05D007753 6.0e-253 878.6 1371 43.5
Sc22g0005410 Simmondsia chinensis HOM05D006627 ORTHO05D007753 1.8e-161 574.7 1400 35.2
Haze_08819 Corylus avellana HOM05D006627 ORTHO05D007753 1.3e-106 392.5 1324 32.2
Cfa012198 Carpinus fangiana HOM05D006627 ORTHO05D007753 9.3e-105 386.3 1325 32.3
QL12p032277 Quercus lobata HOM05D006627 ORTHO05D007753 1.2e-96 359.4 1328 30.3
TAR629G2332 Trochodendron aralioides HOM05D006627 ORTHO05D007753 4.8e-85 320.9 1426 29.0
GSVIVG01019397001 Vitis vinifera HOM05D006627 ORTHO05D007753 3.8e-82 311.2 1201 30.7
Dinv38916 Davidia involucrata HOM05D006627 ORTHO05D007753 1.4e-79 302.8 1316 29.6
Actinidia28362 Actinidia chinensis HOM05D006627 ORTHO05D007753 2.0e-78 298.9 1326 29.8
TAR375G0196 Trochodendron aralioides HOM05D006627 ORTHO05D007753 5.9e-75 287.3 1411 27.3
TAR374G1318 Trochodendron aralioides HOM05D006627 ORTHO05D007753 7.2e-73 280.4 1282 28.9
Nn1g01607 Nelumbo nucifera HOM05D006627 ORTHO05D007753 5.2e-71 274.2 1400 28.6
Nn1g01606 Nelumbo nucifera HOM05D006627 ORTHO05D007753 7.5e-62 243.8 1375 27.3
MBI04_g35056_MAGBIO Magnolia biondii HOM05D006627 ORTHO05D007753 1.0e-58 233.4 1469 26.7
PSO782G1175 Papaver somniferum HOM05D006627 ORTHO05D007753 2.7e-51 208.8 1261 26.2
PSO478G1013 Papaver somniferum HOM05D006627 ORTHO05D007753 7.7e-51 207.2 1251 27.1
Dinv37613 Davidia involucrata HOM05D006627 ORTHO05D007753 1.4e-47 196.4 1165 26.4
Manes.02G019000 Manihot esculenta HOM05D006627 ORTHO05D007753 1.2e-43 183.3 1193 25.7
GSVIVG01028875001 Vitis vinifera HOM05D006627 ORTHO05D007753 7.8e-43 180.6 1173 26.2
TWI23G0587 Tripterygium wilfordii HOM05D006627 ORTHO05D007753 1.5e-41 176.4 1185 26.9
Atru.chr9.2147 Acer truncatum HOM05D006627 ORTHO05D007753 1.9e-41 176.0 968 26.5
TWI60G0847 Tripterygium wilfordii HOM05D006627 ORTHO05D007753 6.1e-40 171.0 1126 26.0
FAN06G3804 Fragaria x ananassa HOM05D006627 ORTHO05D007753 7.5e-38 164.1 1182 26.1
ECA233G6261 Erigeron canadensis HOM05D006627 ORTHO05D007753 9.8e-38 163.7 1211 25.9
FAN06G3118 Fragaria x ananassa HOM05D006627 ORTHO05D007753 4.9e-37 161.4 1182 26.1
FvH4_7g30110 Fragaria vesca HOM05D006627 ORTHO05D007753 8.3e-37 160.6 1184 26.2
Prupe.2G299600 Prunus persica HOM05D006627 ORTHO05D007753 8.3e-37 160.6 1233 26.1
HanXRQChr13g0394821 Helianthus annuus HOM05D006627 ORTHO05D007753 1.6e-35 156.4 1200 25.9
RcHm_v2.0_Chr1g0378101 Rosa chinensis HOM05D006627 ORTHO05D007753 1.1e-33 150.2 1186 26.5
FAN10G1026 Fragaria x ananassa HOM05D006627 ORTHO05D007753 2.5e-33 149.1 1181 26.1
FAN10G1355 Fragaria x ananassa HOM05D006627 ORTHO05D007753 2.5e-33 149.1 1189 26.1
MD07G1277900 Malus domestica HOM05D006627 ORTHO05D007753 3.3e-33 148.7 1222 25.8
FAN03G1328 Fragaria x ananassa HOM05D006627 ORTHO05D007753 4.3e-33 148.3 1196 26.0
FAN03G3330 Fragaria x ananassa HOM05D006627 ORTHO05D007753 1.2e-32 146.7 1196 25.4
TWI14G0178 Tripterygium wilfordii HOM05D006627 ORTHO05D007753 1.6e-32 146.4 1130 27.0
Dinv28394 Davidia involucrata HOM05D006627 ORTHO05D007753 2.3e-31 142.5 1218 25.4
FAN01G2627 Fragaria x ananassa HOM05D006627 ORTHO05D007753 4.0e-31 141.7 1170 26.2
Oeu060456.3 Olea europaea HOM05D006627 ORTHO05D007753 1.1e-28 133.7 1204 25.3
DCAR_020266 Daucus carota HOM05D006627 ORTHO05D007753 2.4e-28 132.5 1210 25.5
Actinidia14583 Actinidia chinensis HOM05D006627 ORTHO05D007753 5.4e-28 131.3 255 37.3
COL.COLO4_28015 Corchorus olitorius HOM05D006627 ORTHO05D007753 6.0e-27 127.9 1228 25.6
Lsat_1_v5_gn_6_5180 Lactuca sativa HOM05D006627 ORTHO05D007753 2.3e-26 125.9 1165 26.1
Duzib205G1471 Durio zibethinus HOM05D006627 ORTHO05D007753 1.5e-25 123.2 1245 24.5
Thecc.03G182600 Theobroma cacao HOM05D006627 ORTHO05D007753 5.6e-25 121.3 1267 24.3
Ciclev10004200m.g Citrus clementina HOM05D006627 ORTHO05D007753 4.7e-24 118.2 1188 25.5
CSS0035854 Camellia sinensis var. sinensis HOM05D006627 ORTHO05D007753 8.1e-24 117.5 1024 26.0
CSS0044230 Camellia sinensis var. sinensis HOM05D006627 ORTHO05D007753 8.1e-24 117.5 1024 26.0
Peaxi162Scf00444g00008 Petunia axillaris HOM05D006627 ORTHO05D007753 1.8e-23 116.3 1193 23.4
Haze_00034 Corylus avellana HOM05D006627 ORTHO05D007753 1.5e-22 113.2 1162 24.2
Lj1C1004T5 Lonicera japonica HOM05D006627 ORTHO05D007753 4.4e-22 111.7 1290 24.1
MD01G1207000 Malus domestica HOM05D006627 ORTHO05D007753 9.9e-22 110.5 1312 23.6
Cc02_g02490 Coffea canephora HOM05D006627 ORTHO05D007753 1.4e-20 106.7 1194 23.7
vmacro06637 Vaccinium macrocarpon HOM05D006627 ORTHO05D007753 1.4e-20 106.7 1101 24.8
Duzib084G0535 Durio zibethinus HOM05D006627 ORTHO05D007753 9.2e-20 104.0 1232 24.4
Actinidia34148 Actinidia chinensis HOM05D001410 ORTHO05D007753 1.0e-18 100.5 1092 24.7
MSTRG.27091 Avicennia marina HOM05D006627 ORTHO05D007753 1.6e-16 93.2 1157 25.2
Potri.004G079000 Populus trichocarpa HOM05D006627 ORTHO05D007753 2.1e-16 92.8 1308 24.3
Actinidia31835 Actinidia chinensis HOM05D006627 ORTHO05D007753 2.8e-16 92.4 1034 23.7
MSTRG.8718 Avicennia marina HOM05D006627 ORTHO05D007753 3.6e-16 92.0 1199 24.9
ECA233G3260 Erigeron canadensis HOM05D001089 ORTHO05D000920 6.2e-16 91.3 626 26.2
Cpa.g.sc107.97 Carica papaya HOM05D006627 ORTHO05D007753 1.8e-15 89.7 1080 24.4
Dinv35242 Davidia involucrata HOM05D006627 ORTHO05D007753 1.8e-15 89.7 261 31.4
Actinidia03134 Actinidia chinensis HOM05D006627 ORTHO05D007753 2.4e-15 89.4 1063 24.4
Sabra04G0052500 Salix brachista HOM05D006627 ORTHO05D007753 2.4e-15 89.4 1198 25.0
SalBow4G0794 Salvia bowleyana HOM05D006627 ORTHO05D007753 2.4e-15 89.4 1149 23.7
Atru.chr9.2148 Acer truncatum HOM05D006627 ORTHO05D007753 2.0e-14 86.3 130 44.6
vmacro06638 Vaccinium macrocarpon HOM05D006627 ORTHO05D007753 2.2e-13 82.8 1133 23.8
ATR0661G323 Amborella trichopoda HOM05D006627 ORTHO05D007753 2.9e-13 82.4 327 33.9
THA.LOC104811963 Tarenaya hassleriana HOM05D008661 ORTHO05D010872 4.9e-13 81.6 284 29.2
DCAR_009389 Daucus carota HOM05D006627 ORTHO05D007753 6.4e-13 81.3 1223 23.1
Gohir.A10G234800 Gossypium hirsutum HOM05D006627 ORTHO05D007753 6.4e-13 81.3 1130 24.3
Rhsim07G0129400 Rhododendron simsii HOM05D006627 ORTHO05D007753 4.2e-12 78.6 1195 23.1
THA.LOC104800273 Tarenaya hassleriana HOM05D008661 ORTHO05D010872 5.4e-12 78.2 280 29.6
Sabra17G0119400 Salix brachista HOM05D001410 ORTHO05D006840 7.1e-12 77.8 1152 23.4
Aqoxy2G01934 Aquilegia oxysepala HOM05D000283 ORTHO05D006673 9.2e-12 77.4 323 31.6
Atru.chr1.386 Acer truncatum HOM05D006627 ORTHO05D007753 2.1e-11 76.3 1229 23.3
Atru.chr1.369 Acer truncatum HOM05D006627 ORTHO05D007753 2.7e-11 75.9 1229 23.3
Atru.ctg97_1.2 Acer truncatum HOM05D006627 ORTHO05D007753 2.7e-11 75.9 1229 23.3
Dinv35244 Davidia involucrata HOM05D006627 ORTHO05D007753 2.7e-11 75.9 218 33.5
Gohir.D10G247200 Gossypium hirsutum HOM05D006627 ORTHO05D007753 3.5e-11 75.5 1155 24.1
Gorai.011G285600 Gossypium raimondii HOM05D006627 ORTHO05D007753 3.5e-11 75.5 1155 24.1
Os08g0430000 Oryza sativa ssp. japonica HOM05D006627 ORTHO05D007753 4.6e-11 75.1 1325 23.3
Rhsim03G0190100 Rhododendron simsii HOM05D006627 ORTHO05D007753 1.3e-10 73.6 1174 23.2
PGSC0003DMG400010123 Solanum tuberosum HOM05D006627 ORTHO05D007753 1.3e-10 73.6 1073 24.0
Rhsim07G0129200 Rhododendron simsii HOM05D006627 ORTHO05D007753 1.7e-10 73.2 1186 23.5
HPP92_028535 Vanilla planifolia HOM05D061474 ORTHO05D007753 2.3e-10 72.8 240 32.9
Hma1.2p1_0327F.1_g126380 Hydrangea macrophylla HOM05D006627 ORTHO05D007753 3.9e-10 72.0 626 24.4
Sopen03g004000 Solanum pennellii HOM05D006627 ORTHO05D007753 5.1e-10 71.6 1019 23.3
Potri.017G142600 Populus trichocarpa HOM05D006627 ORTHO05D007753 8.7e-10 70.9 1223 23.7
Aa31LG3G8880 Aethionema arabicum HOM05D008661 ORTHO05D010872 1.1e-09 70.5 301 29.9
AUR62031403 Chenopodium quinoa HOM05D006627 ORTHO05D007753 1.9e-09 69.7 279 29.4
HPP92_028524 Vanilla planifolia HOM05D061474 ORTHO05D007753 3.3e-09 68.9 441 28.3
AL7G27440 Arabidopsis lyrata HOM05D008661 ORTHO05D010872 4.3e-09 68.6 354 25.4
CAN.G236.7 Capsicum annuum HOM05D006627 ORTHO05D007753 5.6e-09 68.2 1080 23.3
ATR0681G260 Amborella trichopoda HOM05D000283 ORTHO05D006673 7.3e-09 67.8 281 32.0
EL10Ac3g05437 Beta vulgaris HOM05D006627 ORTHO05D007753 1.2e-08 67.0 292 27.4
Carub.0007s1533 Capsella rubella HOM05D008661 ORTHO05D010872 1.6e-08 66.6 291 27.8
Carub.0238s0001 Capsella rubella HOM05D008661 ORTHO05D010872 2.1e-08 66.2 290 26.9
A08p21040 Brassica napus HOM05D008661 ORTHO05D010872 2.8e-08 65.9 282 28.0
C08p09590 Brassica napus HOM05D008661 ORTHO05D010872 2.8e-08 65.9 256 29.3
BraA08t34056Z Brassica rapa HOM05D008661 ORTHO05D010872 2.8e-08 65.9 282 28.0
AL8G26990 Arabidopsis lyrata HOM05D008661 ORTHO05D010872 6.2e-08 64.7 336 26.2
CARHR233080 Cardamine hirsuta HOM05D008661 ORTHO05D010872 6.2e-08 64.7 298 29.2
BcaB03g12481 Brassica carinata HOM05D008661 ORTHO05D010872 8.1e-08 64.3 295 28.5
BcaC07g38204 Brassica carinata HOM05D008661 ORTHO05D010872 8.1e-08 64.3 255 28.2
BolC8t48627H Brassica oleracea HOM05D008661 ORTHO05D010872 8.1e-08 64.3 255 28.2
CDE07G1237 Ceratophyllum demersum HOM05D006627 ORTHO05D007753 1.1e-07 63.9 602 24.8
Sp7g23680 Schrenkiella parvula HOM05D008661 ORTHO05D010872 4.0e-07 62.0 276 29.3
Ah.07g206700 Amaranthus hybridus HOM05D006627 ORTHO05D007753 6.9e-07 61.2 366 23.5
Migut.F00307 Erythranthe guttata HOM05D006627 ORTHO05D007753 6.9e-07 61.2 508 28.1
BcaB03g12479 Brassica carinata HOM05D008661 ORTHO05D010872 9.0e-07 60.8 305 27.9
A08p21060 Brassica napus HOM05D008661 ORTHO05D010872 9.0e-07 60.8 281 27.4
Sp6g14700 Schrenkiella parvula HOM05D008661 ORTHO05D010872 1.2e-06 60.5 236 28.8
CARHR233070 Cardamine hirsuta HOM05D008661 ORTHO05D010872 3.4e-06 58.9 328 26.5
HanXRQChr09g0252481 Helianthus annuus HOM05D029832 ORTHO05D007753 3.4e-06 58.9 379 23.7
Solyc03g025150.4 Solanum lycopersicum HOM05D006627 ORTHO05D007753 5.8e-06 58.2 1026 23.0
CiPaw.02G178500 Carya illinoinensis HOM05D000283 ORTHO05D006673 9.9e-06 57.4 271 28.0
QL08p057512 Quercus lobata HOM05D000283 ORTHO05D006673 9.9e-06 57.4 250 29.6
HPP92_025630 Vanilla planifolia HOM05D006627 ORTHO05D007753 9.9e-06 57.4 1304 23.8


User provided reference genes

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