Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g196240 Amaranthus hybridus HOM05D008339 ORTHO05D009712 9.9e-89 330.1 167 100.0
AUR62000433 Chenopodium quinoa HOM05D000060 ORTHO05D004147 1.0e-48 197.2 160 62.5
Cfa012848 Carpinus fangiana HOM05D008339 ORTHO05D009712 5.3e-26 121.7 162 42.0
Potri.005G007100 Populus trichocarpa HOM05D008339 ORTHO05D009712 6.5e-24 114.8 155 41.3
Haze_08675 Corylus avellana HOM05D008339 ORTHO05D009712 3.2e-23 112.5 153 44.4
Prupe.6G309300 Prunus persica HOM05D008339 ORTHO05D009712 4.2e-23 112.1 155 39.4
Sabra05G0018000 Salix brachista HOM05D008339 ORTHO05D009712 2.1e-22 109.8 155 38.7
MD12G1203300 Malus domestica HOM05D008339 ORTHO05D009712 2.7e-22 109.4 160 36.9
ClCG02G014760 Citrullus lanatus HOM05D008339 ORTHO05D009712 6.1e-22 108.2 157 38.2
RcHm_v2.0_Chr3g0457691 Rosa chinensis HOM05D008339 ORTHO05D009712 6.1e-22 108.2 166 36.7
CANSAT54G0094 Cannabis sativa HOM05D008339 ORTHO05D009712 1.4e-21 107.1 163 39.3
Sed0007759 Sechium edule HOM05D008339 ORTHO05D009712 1.8e-21 106.7 150 40.0
FvH4_6g08020 Fragaria vesca HOM05D008339 ORTHO05D009712 3.9e-21 105.5 166 38.6
FAN14G1454 Fragaria x ananassa HOM05D008339 ORTHO05D009712 3.9e-21 105.5 166 38.6
MELO3C031525.2 Cucumis melo HOM05D008339 ORTHO05D009712 5.2e-21 105.1 159 40.3
FAN02G4119 Fragaria x ananassa HOM05D008339 ORTHO05D009712 5.2e-21 105.1 166 38.0
MD12G1203500 Malus domestica HOM05D008339 ORTHO05D009712 6.7e-21 104.8 162 35.8
CANSAT54G1683 Cannabis sativa HOM05D008339 ORTHO05D009712 1.5e-20 103.6 163 38.7
FAN05G1492 Fragaria x ananassa HOM05D008339 ORTHO05D009712 1.5e-20 103.6 158 38.0
Rhsim11G0099000 Rhododendron simsii HOM05D008339 ORTHO05D009712 4.4e-20 102.1 155 36.1
MD12G1203400 Malus domestica HOM05D008339 ORTHO05D009712 1.3e-19 100.5 162 34.6
Cpa.g.sc48.196 Carica papaya HOM05D008339 ORTHO05D009712 1.7e-19 100.1 153 37.9
Sabra05G0006500 Salix brachista HOM05D008339 ORTHO05D009712 1.7e-19 100.1 142 39.4
Sabra13G0004800 Salix brachista HOM05D008339 ORTHO05D009712 1.6e-17 93.6 150 38.7
Thecc.05G309700 Theobroma cacao HOM05D008339 ORTHO05D009712 1.6e-17 93.6 153 36.6
MELO3C004166.2 Cucumis melo HOM05D008339 ORTHO05D009712 3.5e-17 92.4 158 35.4
PGR031G0599 Punica granatum HOM05D008339 ORTHO05D009712 3.5e-17 92.4 160 38.8
FvH4_6g07980 Fragaria vesca HOM05D008339 ORTHO05D009712 7.7e-17 91.3 166 32.5
FAN14G5780 Fragaria x ananassa HOM05D008339 ORTHO05D009712 7.7e-17 91.3 166 32.5
PGR031G2810 Punica granatum HOM05D008339 ORTHO05D009712 2.2e-16 89.7 152 36.8
MELO3C004168.2 Cucumis melo HOM05D008339 ORTHO05D009712 2.9e-16 89.4 158 34.8
MELO3C004156.2 Cucumis melo HOM05D008339 ORTHO05D009712 3.8e-16 89.0 158 34.2
PGR004G1038 Punica granatum HOM05D008339 ORTHO05D009712 1.5e-15 87.0 150 33.3
ClCG02G014750 Citrullus lanatus HOM05D008339 ORTHO05D013640 3.2e-15 85.9 160 35.6
Sed0011112 Sechium edule HOM05D008339 ORTHO05D009712 7.2e-15 84.7 153 33.3
PGR031G3971 Punica granatum HOM05D008339 ORTHO05D009712 1.2e-14 84.0 160 35.0
Ciclev10013648m.g Citrus clementina HOM05D008339 ORTHO05D009712 2.1e-14 83.2 160 31.9
Eucgr.E00366 Eucalyptus grandis HOM05D008339 ORTHO05D009712 6.1e-14 81.6 156 35.3
TWI12G1182 Tripterygium wilfordii HOM05D008339 ORTHO05D009712 6.1e-14 81.6 155 36.1
CsaV3_2G007240 Cucumis sativus L. HOM05D008339 ORTHO05D007109 1.8e-13 80.1 165 32.1
Gorai.007G298200 Gossypium raimondii HOM05D008339 ORTHO05D009712 4.4e-12 75.5 128 36.7
MELO3C031306.2 Cucumis melo HOM05D008339 ORTHO05D009712 5.7e-12 75.1 142 35.2
Gohir.D11G276100 Gossypium hirsutum HOM05D008339 ORTHO05D009712 7.5e-12 74.7 126 37.3
THA.LOC104816853 Tarenaya hassleriana HOM05D009911 ORTHO05D009712 9.7e-12 74.3 149 30.9
SGA_v2.0_scaffold74G24614 Striga asiatica HOM05D008339 ORTHO05D009712 4.8e-11 72.0 140 33.6
SGA_v2.0_scaffold74G24613 Striga asiatica HOM05D009933 ORTHO05D012084 8.2e-11 71.2 150 31.3
MELO3C031523.2 Cucumis melo HOM05D008339 ORTHO05D009712 1.4e-10 70.5 78 51.3
MELO3C031309.2 Cucumis melo HOM05D008339 ORTHO05D009712 2.4e-10 69.7 79 51.9
CARHR178520 Cardamine hirsuta HOM05D013394 ORTHO05D009712 7.0e-10 68.2 156 30.8
SalBow7G3223 Salvia bowleyana HOM05D009933 ORTHO05D012084 7.0e-10 68.2 155 30.3
MELO3C031307.2 Cucumis melo HOM05D008339 ORTHO05D009712 1.2e-09 67.4 142 31.7
TAR362G0027 Trochodendron aralioides HOM05D008339 ORTHO05D009712 1.2e-09 67.4 154 30.5
SalBow7G3334 Salvia bowleyana HOM05D000059 ORTHO05D012084 1.6e-09 67.0 155 29.7
SalBow7G2832 Salvia bowleyana HOM05D009933 ORTHO05D012084 2.0e-09 66.6 158 28.5
C05p07360 Brassica napus HOM05D009911 ORTHO05D009712 3.5e-09 65.9 154 29.2
BcaC05g24790 Brassica carinata HOM05D009911 ORTHO05D009712 4.5e-09 65.5 154 29.2
BolC5t29493H Brassica oleracea HOM05D009911 ORTHO05D009712 4.5e-09 65.5 154 29.2
Sabra11G0113000 Salix brachista HOM05D008339 ORTHO05D009712 5.9e-09 65.1 77 45.5
AT1G09360 Arabidopsis thaliana HOM05D013394 ORTHO05D009712 7.7e-09 64.7 155 31.6
BraA06t23818Z Brassica rapa HOM05D009911 ORTHO05D009712 1.3e-08 63.9 154 29.9
PGR031G3403 Punica granatum HOM05D008339 ORTHO05D009712 1.3e-08 63.9 143 30.1
CARHR178500 Cardamine hirsuta HOM05D013394 ORTHO05D009712 1.7e-08 63.5 154 27.9
A06p06070 Brassica napus HOM05D009911 ORTHO05D009712 3.8e-08 62.4 154 29.2
MELO3C004157.2 Cucumis melo HOM05D008339 ORTHO05D009712 5.0e-08 62.0 138 32.6
FAN05G4801 Fragaria x ananassa HOM05D008339 ORTHO05D009712 6.5e-08 61.6 100 34.0
Sp1g07970 Schrenkiella parvula HOM05D013394 ORTHO05D009712 1.9e-07 60.1 156 26.9
FAN02G0526 Fragaria x ananassa HOM05D000010 ORTHO05D004316 7.2e-07 58.2 75 38.7
MELO3C004164.2 Cucumis melo HOM05D008339 ORTHO05D009712 2.1e-06 56.6 160 31.2


User provided reference genes

Program Settings