Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g196140 Amaranthus hybridus HOM05D004470 ORTHO05D005079 6.7e-54 213.8 108 100.0
Ah.16g100620 Amaranthus hybridus HOM05D004470 ORTHO05D005079 1.5e-53 212.6 108 99.1
AUR62006764 Chenopodium quinoa HOM05D004470 ORTHO05D005079 7.9e-47 190.3 114 86.0
EL10Ac4g09488 Beta vulgaris HOM05D004470 ORTHO05D005079 1.3e-44 183.0 114 83.3
Hund07308 Selenicereus undatus HOM05D004470 ORTHO05D005079 2.9e-41 171.8 116 79.3
Sed0027904 Sechium edule HOM05D004470 ORTHO05D005079 1.3e-36 156.4 107 74.8
Sc16g0009110 Simmondsia chinensis HOM05D004470 ORTHO05D005079 1.3e-36 156.4 111 71.2
CsaV3_1G037920 Cucumis sativus L. HOM05D004470 ORTHO05D005079 2.2e-36 155.6 107 75.7
MELO3C015252.2 Cucumis melo HOM05D004470 ORTHO05D005079 1.4e-35 152.9 105 75.2
Nitab4.5_0010074g0010 Nicotiana tabacum HOM05D004470 ORTHO05D005079 1.4e-35 152.9 111 73.0
Glyma.10G146200 Glycine max HOM05D004470 ORTHO05D005079 3.1e-35 151.8 106 71.7
CANSAT54G2827 Cannabis sativa HOM05D004470 ORTHO05D005079 4.1e-35 151.4 105 72.4
CANSAT56G4147 Cannabis sativa HOM05D004470 ORTHO05D005079 4.1e-35 151.4 110 71.8
Peaxi162Scf00357g00829 Petunia axillaris HOM05D004470 ORTHO05D005079 6.9e-35 150.6 111 73.0
Manes.08G110300 Manihot esculenta HOM05D004470 ORTHO05D005079 9.0e-35 150.2 107 72.0
Thecc.05G324600 Theobroma cacao HOM05D004470 ORTHO05D005079 9.0e-35 150.2 106 74.5
Gohir.A08G205100 Gossypium hirsutum HOM05D004470 ORTHO05D005079 1.2e-34 149.8 108 71.3
Gohir.D08G222200 Gossypium hirsutum HOM05D004470 ORTHO05D005079 1.2e-34 149.8 108 71.3
Gorai.004G236000 Gossypium raimondii HOM05D004470 ORTHO05D005079 1.2e-34 149.8 108 71.3
Nitab4.5_0001338g0040 Nicotiana tabacum HOM05D004470 ORTHO05D005079 1.2e-34 149.8 111 73.0
TPR.G34849 Trifolium pratense HOM05D004470 ORTHO05D005079 1.2e-34 149.8 111 70.3
Glyma.20G096000 Glycine max HOM05D004470 ORTHO05D005079 2.0e-34 149.1 109 71.6
Duzib128G0232 Durio zibethinus HOM05D004470 ORTHO05D005079 2.6e-34 148.7 106 74.5
Phvul.007G202300 Phaseolus vulgaris HOM05D004470 ORTHO05D005079 2.6e-34 148.7 118 67.8
Sopen01g044200 Solanum pennellii HOM05D004470 ORTHO05D005079 3.4e-34 148.3 110 71.8
Hma1.2p1_0052F.1_g030690 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 4.5e-34 147.9 109 70.6
Prupe.3G062500 Prunus persica HOM05D004470 ORTHO05D005079 4.5e-34 147.9 105 71.4
PGSC0003DMG400002761 Solanum tuberosum HOM05D004470 ORTHO05D005079 4.5e-34 147.9 110 71.8
TAR362G0763 Trochodendron aralioides HOM05D004470 ORTHO05D005079 4.5e-34 147.9 109 68.8
arahy.Tifrunner.gnm1.ann1.IGN13F Arachis hypogaea HOM05D004470 ORTHO05D005079 5.9e-34 147.5 92 80.4
CAN.G1076.31 Capsicum annuum HOM05D004470 ORTHO05D005079 5.9e-34 147.5 111 70.3
COL.COLO4_05537 Corchorus olitorius HOM05D004470 ORTHO05D005079 5.9e-34 147.5 108 69.4
Psat1g179040 Pisum sativum HOM05D004470 ORTHO05D005079 7.6e-34 147.1 93 79.6
TPR.G29395 Trifolium pratense HOM05D004470 ORTHO05D005079 7.6e-34 147.1 93 78.5
Atru.chr1.2932 Acer truncatum HOM05D004470 ORTHO05D005079 1.0e-33 146.7 108 73.1
Medtr2g023920 Medicago truncatula HOM05D004470 ORTHO05D005079 1.0e-33 146.7 117 65.0
Manes.09G177800 Manihot esculenta HOM05D004470 ORTHO05D005079 1.3e-33 146.4 107 70.1
TWI36G1558 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.7e-33 146.0 112 72.3
Hma1.2p1_0008F-1.1_g005470 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 2.2e-33 145.6 107 71.0
Sabra05G0020100 Salix brachista HOM05D004470 ORTHO05D005079 3.8e-33 144.8 111 71.2
Sabra13G0006500 Salix brachista HOM05D004470 ORTHO05D005079 3.8e-33 144.8 115 69.6
CiPaw.08G154600 Carya illinoinensis HOM05D004470 ORTHO05D005079 5.0e-33 144.4 108 73.1
CSS0034232 Camellia sinensis var. sinensis HOM05D004470 ORTHO05D005079 6.5e-33 144.1 107 71.0
Potri.013G007600 Populus trichocarpa HOM05D004470 ORTHO05D005079 6.5e-33 144.1 115 70.4
Lj6g0017458 Lotus japonicus HOM05D004470 ORTHO05D005079 8.5e-33 143.7 92 77.2
CiPaw.07G030800 Carya illinoinensis HOM05D004470 ORTHO05D005079 1.1e-32 143.3 108 72.2
Potri.005G011800 Populus trichocarpa HOM05D004470 ORTHO05D005079 1.1e-32 143.3 115 69.6
MSTRG.5145 Avicennia marina HOM05D004470 ORTHO05D005079 1.4e-32 142.9 108 69.4
arahy.Tifrunner.gnm1.ann1.3R4C35 Arachis hypogaea HOM05D004470 ORTHO05D005079 2.5e-32 142.1 86 81.4
arahy.Tifrunner.gnm1.ann1.44SN5D Arachis hypogaea HOM05D004470 ORTHO05D005079 2.5e-32 142.1 86 81.4
GSVIVG01031257001 Vitis vinifera HOM05D004470 ORTHO05D005079 2.5e-32 142.1 84 79.8
ClCG03G017770 Citrullus lanatus HOM05D004470 ORTHO05D005079 3.2e-32 141.7 141 56.7
Prupe.2G047800 Prunus persica HOM05D004470 ORTHO05D005079 3.2e-32 141.7 105 67.6
QL03p015399 Quercus lobata HOM05D004470 ORTHO05D005079 3.2e-32 141.7 108 70.4
Aqoxy2G02663 Aquilegia oxysepala HOM05D004470 ORTHO05D005079 4.2e-32 141.4 85 78.8
CARHR186760 Cardamine hirsuta HOM05D004470 ORTHO05D005079 4.2e-32 141.4 110 65.5
Haze_04037 Corylus avellana HOM05D004470 ORTHO05D005079 4.2e-32 141.4 108 70.4
C09p06260 Brassica napus HOM05D004470 ORTHO05D005079 5.5e-32 141.0 108 66.7
BraA09t36207Z Brassica rapa HOM05D004470 ORTHO05D005079 5.5e-32 141.0 108 65.7
Lalb_Chr02g0147721 Lupinus albus HOM05D004470 ORTHO05D005079 5.5e-32 141.0 92 77.2
A09p05650 Brassica napus HOM05D004470 ORTHO05D005079 9.3e-32 140.2 108 65.7
Duzib106G0025 Durio zibethinus HOM05D004470 ORTHO05D005079 9.3e-32 140.2 106 69.8
MD10G1090000 Malus domestica HOM05D004470 ORTHO05D005079 9.3e-32 140.2 100 70.0
Nn3g21765 Nelumbo nucifera HOM05D004470 ORTHO05D005079 9.3e-32 140.2 96 72.9
SGA_v2.0_scaffold37G14596 Striga asiatica HOM05D004470 ORTHO05D005079 9.3e-32 140.2 109 69.7
BolC9t53546H Brassica oleracea HOM05D004470 ORTHO05D005079 1.2e-31 139.8 108 65.7
BraA06t26628Z Brassica rapa HOM05D004470 ORTHO05D005079 1.2e-31 139.8 108 66.7
BcaC04g23637 Brassica carinata HOM05D004470 ORTHO05D005079 1.6e-31 139.4 108 65.7
AUR62000416 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.6e-31 139.4 88 81.8
Nitab4.5_0001255g0050 Nicotiana tabacum HOM05D004470 ORTHO05D005079 1.6e-31 139.4 139 59.0
TWI63G0379 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.6e-31 139.4 95 74.7
Ca_10181_v3 Cicer arietinum L. HOM05D004470 ORTHO05D005079 2.1e-31 139.0 111 64.9
Eucgr.H03299 Eucalyptus grandis HOM05D004470 ORTHO05D005079 2.1e-31 139.0 105 70.5
BcaNung03915 Brassica carinata HOM05D004470 ORTHO05D005079 2.7e-31 138.7 103 68.0
Hund21865 Selenicereus undatus HOM05D004470 ORTHO05D005079 2.7e-31 138.7 81 82.7
Sp2g21200 Schrenkiella parvula HOM05D004470 ORTHO05D005079 3.6e-31 138.3 108 66.7
ATR0693G181 Amborella trichopoda HOM05D004470 ORTHO05D005079 4.6e-31 137.9 85 78.8
A06p37040 Brassica napus HOM05D004470 ORTHO05D005079 6.1e-31 137.5 108 65.7
Eucgr.A00650 Eucalyptus grandis HOM05D004470 ORTHO05D005079 6.1e-31 137.5 108 67.6
PGR031G2302 Punica granatum HOM05D004470 ORTHO05D005079 6.1e-31 137.5 116 64.7
Dinv30905 Davidia involucrata HOM05D004470 ORTHO05D005079 1.0e-30 136.7 107 65.4
MD07G1055000 Malus domestica HOM05D004470 ORTHO05D005079 1.0e-30 136.7 90 72.2
TWI34G1281 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.0e-30 136.7 110 67.3
BcaNung03672 Brassica carinata HOM05D004470 ORTHO05D005079 1.8e-30 136.0 96 68.8
SGA_v2.0_scaffold5G02899 Striga asiatica HOM05D004470 ORTHO05D005079 2.3e-30 135.6 100 67.0
FAN02G2550 Fragaria x ananassa HOM05D004470 ORTHO05D005079 3.0e-30 135.2 105 66.7
FAN05G2322 Fragaria x ananassa HOM05D004470 ORTHO05D005079 3.0e-30 135.2 105 66.7
AL6G38670 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 5.1e-30 134.4 108 61.1
CDE09G1304 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 5.1e-30 134.4 90 72.2
Ciclev10002908m.g Citrus clementina HOM05D004470 ORTHO05D005079 5.1e-30 134.4 108 67.6
BcaB04g19711 Brassica carinata HOM05D004470 ORTHO05D005079 6.7e-30 134.0 108 63.9
CDE02G2719 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 6.7e-30 134.0 90 71.1
Oeu000058.1 Olea europaea HOM05D004470 ORTHO05D005079 6.7e-30 134.0 107 65.4
SalBow5G0245 Salvia bowleyana HOM05D004470 ORTHO05D005079 6.7e-30 134.0 112 66.1
Carub.0006s2445 Capsella rubella HOM05D004470 ORTHO05D005079 8.8e-30 133.7 98 68.4
Migut.N00943 Erythranthe guttata HOM05D004470 ORTHO05D005079 1.1e-29 133.3 106 66.0
FAN14G0179 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.1e-29 133.3 105 65.7
Actinidia35512 Actinidia chinensis HOM05D004470 ORTHO05D005079 1.5e-29 132.9 100 66.0
BolC7t44679H Brassica oleracea HOM05D004470 ORTHO05D005079 1.5e-29 132.9 108 63.9
FAN09G3660 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.5e-29 132.9 105 64.8
RcHm_v2.0_Chr2g0139741 Rosa chinensis HOM05D004470 ORTHO05D005079 2.5e-29 132.1 105 65.7
THA.LOC104802774 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 3.3e-29 131.7 103 66.0
Cfa006723 Carpinus fangiana HOM05D004470 ORTHO05D005079 4.3e-29 131.3 105 66.7
Cc02_g35220 Coffea canephora HOM05D004470 ORTHO05D005079 7.4e-29 130.6 85 74.1
PSO339G4842 Papaver somniferum HOM05D004470 ORTHO05D005079 7.4e-29 130.6 101 67.3
Aa31LG5G16190 Aethionema arabicum HOM05D004470 ORTHO05D005079 2.2e-28 129.0 86 73.3
CARHR080260 Cardamine hirsuta HOM05D004470 ORTHO05D005079 2.2e-28 129.0 98 66.3
HPP92_027934 Vanilla planifolia HOM05D004470 ORTHO05D005079 2.8e-28 128.6 89 68.5
Carub.0003s0517 Capsella rubella HOM05D004470 ORTHO05D005079 3.7e-28 128.3 98 66.3
PSO513G0108 Papaver somniferum HOM05D004470 ORTHO05D005079 3.7e-28 128.3 101 65.3
HPP92_002708 Vanilla planifolia HOM05D004470 ORTHO05D005079 3.7e-28 128.3 87 67.8
AL3G16550 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 6.3e-28 127.5 96 65.6
ECA238G3981 Erigeron canadensis HOM05D004470 ORTHO05D005079 6.3e-28 127.5 115 61.7
MBI18_g35544_MAGBIO Magnolia biondii HOM05D004470 ORTHO05D005079 6.3e-28 127.5 115 60.9
Lsat_1_v5_gn_2_67201 Lactuca sativa HOM05D004470 ORTHO05D005079 8.2e-28 127.1 113 62.8
PSO541G1615 Papaver somniferum HOM05D004470 ORTHO05D005079 8.2e-28 127.1 88 72.7
PSO675G4687 Papaver somniferum HOM05D004470 ORTHO05D005079 8.2e-28 127.1 88 72.7
AT3G05810 Arabidopsis thaliana HOM05D004470 ORTHO05D005079 1.8e-27 125.9 98 64.3
THA.LOC104821881 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 1.8e-27 125.9 120 55.0
Sabra05G0008600 Salix brachista HOM05D004470 ORTHO05D005079 4.1e-27 124.8 152 52.0
DCAR_025290 Daucus carota HOM05D004470 ORTHO05D005079 5.3e-27 124.4 100 66.0
HPP92_002665 Vanilla planifolia HOM05D004470 ORTHO05D005079 5.3e-27 124.4 89 67.4
Sp3g04670 Schrenkiella parvula HOM05D004470 ORTHO05D005079 2.0e-26 122.5 87 67.8
Thhalv10021798m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 5.9e-26 120.9 98 64.3
Nn4g25533 Nelumbo nucifera HOM05D004470 ORTHO05D005079 5.0e-25 117.9 143 48.3
HanXRQChr14g0445721 Helianthus annuus HOM05D004470 ORTHO05D005079 8.5e-25 117.1 113 58.4
Zm00001eb130040 Zea mays HOM05D004470 ORTHO05D005079 2.7e-23 112.1 88 63.6
Zm00001eb340410 Zea mays HOM05D004470 ORTHO05D005079 2.7e-23 112.1 82 67.1
Os01g0299400 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 4.7e-23 111.3 87 64.4
MD15G1427600 Malus domestica HOM05D004470 ORTHO05D005079 6.1e-23 110.9 72 73.6
VMungo0720G0966 Vigna mungo HOM05D004470 ORTHO05D005079 3.9e-22 108.2 93 66.7
Lju926A3T37 Lonicera japonica HOM05D004470 ORTHO05D005079 5.1e-22 107.8 83 68.7
Os10g0150200 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 2.6e-21 105.5 87 62.1
Rhsim11G0097400 Rhododendron simsii HOM05D004470 ORTHO05D005079 4.4e-21 104.8 96 63.5
vmacro01577 Vaccinium macrocarpon HOM05D004470 ORTHO05D005079 7.4e-21 104.0 91 67.0
FAN28G2801 Fragaria x ananassa HOM05D004470 ORTHO05D005079 6.3e-20 100.9 96 59.4
Sc18g0006160 Simmondsia chinensis HOM05D004470 ORTHO05D005079 8.2e-20 100.5 87 60.9
DCAR_002036 Daucus carota HOM05D004470 ORTHO05D005079 1.1e-19 100.1 84 63.1
FAN26G0538 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.4e-19 99.0 106 55.7
FvH4_6g32060 Fragaria vesca HOM05D004470 ORTHO05D005079 2.0e-18 95.9 80 63.8
Aa31LG1G17020 Aethionema arabicum HOM05D004470 ORTHO05D005079 1.4e-16 89.7 65 67.7
C02p58610 Brassica napus HOM05D004470 ORTHO05D005079 1.4e-16 89.7 74 60.8
BcaC03g17832 Brassica carinata HOM05D004470 ORTHO05D005079 1.9e-16 89.4 77 57.1
BcaNung06220 Brassica carinata HOM05D004470 ORTHO05D005079 1.9e-16 89.4 77 57.1
Thhalv10026672m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 2.5e-16 89.0 77 63.6
HanXRQChr15g0471581 Helianthus annuus HOM05D004470 ORTHO05D005079 1.6e-15 86.3 67 65.7
AagrBONN_evm.TU.Sc2ySwM_228.963 Anthoceros agrestis HOM05D004470 ORTHO05D005079 2.1e-15 85.9 79 50.6
Mapoly0164s0021 Marchantia polymorpha HOM05D004470 ORTHO05D005079 2.1e-15 85.9 101 43.6
unitig_37.g12917 Utricularia gibba HOM05D004470 ORTHO05D005079 2.7e-15 85.5 90 50.0
Rhsim05G0127900 Rhododendron simsii HOM05D004470 ORTHO05D005079 1.4e-14 83.2 51 78.4
Cpa.g.sc48.175 Carica papaya HOM05D004470 ORTHO05D005079 6.7e-14 80.9 50 82.0
Eucgr.H03248 Eucalyptus grandis HOM05D004470 ORTHO05D005079 2.6e-13 79.0 61 67.2
AUR62036369 Chenopodium quinoa HOM05D004470 ORTHO05D005079 3.3e-13 78.6 46 84.8
AUR62033672 Chenopodium quinoa HOM05D004470 ORTHO05D005079 3.7e-12 75.1 73 61.6
SHI42436 Sapria himalayana HOM05D004470 ORTHO05D005079 4.1e-11 71.6 55 63.6
SEGI_31285 Sequoiadendron giganteum HOM05D004470 ORTHO05D005079 9.1e-11 70.5 85 48.2
A02p39020 Brassica napus HOM05D004470 ORTHO05D005079 7.7e-10 67.4 90 46.7
Pp3c6_8090 Physcomitrium patens HOM05D004470 ORTHO05D005079 5.0e-09 64.7 93 39.8
vmacro19787 Vaccinium macrocarpon HOM05D000003 ORTHO05D005079 1.5e-08 63.2 67 53.7
BolC2t11922H Brassica oleracea HOM05D004470 ORTHO05D005079 5.5e-08 61.2 72 45.8
SMO195G0040 Selaginella moellendorffii HOM05D000001 ORTHO05D005079 2.7e-07 58.9 65 44.6
SMO116G0179 Selaginella moellendorffii HOM05D004470 ORTHO05D005079 3.6e-07 58.5 97 38.1
FAN28G0201 Fragaria x ananassa HOM05D004470 ORTHO05D005079 6.7e-06 54.3 55 54.5


User provided reference genes

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