Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g195770 Amaranthus hybridus HOM05D007504 ORTHO05D007629 0.0e+00 1117.1 580 100.0
EL10Ac4g09412 Beta vulgaris HOM05D007504 ORTHO05D007629 3.2e-155 552.7 613 54.3
AUR62006721 Chenopodium quinoa HOM05D007504 ORTHO05D007629 9.6e-115 418.3 868 36.6
AUR62000366 Chenopodium quinoa HOM05D007504 ORTHO05D007629 2.4e-102 377.1 908 34.1
Hund21875 Selenicereus undatus HOM05D007504 ORTHO05D007629 1.2e-77 295.0 595 38.3
Sc09g0001640 Simmondsia chinensis HOM05D007504 ORTHO05D007629 2.0e-67 261.2 594 36.2
Dinv02913 Davidia involucrata HOM05D007504 ORTHO05D007629 1.3e-55 221.9 636 31.6
MD12G1258000 Malus domestica HOM05D007504 ORTHO05D007629 3.6e-45 187.2 622 31.4
Actinidia38910 Actinidia chinensis HOM05D007504 ORTHO05D007629 1.4e-44 185.3 646 29.9
Sc09g0001620 Simmondsia chinensis HOM05D007504 ORTHO05D007629 2.3e-44 184.5 429 36.4
Rhsim09G0131100 Rhododendron simsii HOM05D007504 ORTHO05D007629 1.3e-42 178.7 601 30.9
Cc09_g03320 Coffea canephora HOM05D007504 ORTHO05D007629 3.5e-40 170.6 574 28.9
Gorai.002G147900 Gossypium raimondii HOM05D007504 ORTHO05D007629 1.9e-38 164.9 678 28.2
Lsat_1_v5_gn_8_3001 Lactuca sativa HOM05D007504 ORTHO05D007629 2.5e-38 164.5 621 28.5
Gohir.A13G089900 Gossypium hirsutum HOM05D007504 ORTHO05D007629 7.2e-38 162.9 693 28.0
Lj5g0006161 Lotus japonicus HOM05D007504 ORTHO05D007629 2.1e-37 161.4 632 28.8
CSS0023929 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 1.0e-36 159.1 585 29.7
FvH4_6g00830 Fragaria vesca HOM05D007504 ORTHO05D007629 6.8e-36 156.4 649 29.4
FAN14G3522 Fragaria x ananassa HOM05D007504 ORTHO05D007629 8.8e-36 156.0 650 29.7
PGR031G1611 Punica granatum HOM05D007504 ORTHO05D007629 1.7e-34 151.8 594 29.5
Gohir.D13G093400 Gossypium hirsutum HOM05D007504 ORTHO05D007629 2.2e-34 151.4 680 27.1
RcHm_v2.0_Chr3g0448301 Rosa chinensis HOM05D007504 ORTHO05D007629 3.7e-34 150.6 596 29.2
Manes.08G105000 Manihot esculenta HOM05D007504 ORTHO05D007629 4.9e-34 150.2 562 28.3
CiPaw.07G074500 Carya illinoinensis HOM05D007504 ORTHO05D007629 8.3e-34 149.4 595 29.6
TWI59G0549 Tripterygium wilfordii HOM05D007504 ORTHO05D007629 5.4e-33 146.7 581 27.9
TWI14G0943 Tripterygium wilfordii HOM05D007504 ORTHO05D007629 7.0e-33 146.4 583 27.6
VMungo0720G1881 Vigna mungo HOM05D007504 ORTHO05D007629 2.0e-32 144.8 590 28.5
Cfa006286 Carpinus fangiana HOM05D007504 ORTHO05D007629 7.7e-32 142.9 580 29.1
FAN09G1848 Fragaria x ananassa HOM05D007504 ORTHO05D007629 1.7e-31 141.7 616 27.3
Ca_09972_v3 Cicer arietinum L. HOM05D007504 ORTHO05D007629 8.6e-31 139.4 629 26.2
Nitab4.5_0000276g0060 Nicotiana tabacum HOM05D007504 ORTHO05D007629 1.5e-30 138.7 591 28.9
TPR.G14656 Trifolium pratense HOM05D007504 ORTHO05D007629 1.9e-30 138.3 617 27.2
Eucgr.H01377 Eucalyptus grandis HOM05D007504 ORTHO05D007629 1.2e-29 135.6 569 27.2
Nitab4.5_0000456g0090 Nicotiana tabacum HOM05D007504 ORTHO05D007629 2.1e-29 134.8 589 29.5
Haze_04521 Corylus avellana HOM05D007504 ORTHO05D007629 6.1e-29 133.3 572 29.2
PGSC0003DMG400016931 Solanum tuberosum HOM05D007504 ORTHO05D007629 1.0e-28 132.5 573 29.0
Atru.chr12.1547 Acer truncatum HOM05D007504 ORTHO05D007629 3.0e-28 131.0 609 28.6
Medtr1g078420 Medicago truncatula HOM05D007504 ORTHO05D007629 5.2e-28 130.2 691 25.5
Solyc04g051280.4 Solanum lycopersicum HOM05D007504 ORTHO05D007629 5.2e-28 130.2 598 28.6
ECA233G2160 Erigeron canadensis HOM05D007504 ORTHO05D007629 2.0e-27 128.3 761 23.9
Peaxi162Scf00994g00026 Petunia axillaris HOM05D007504 ORTHO05D007629 2.6e-27 127.9 606 28.4
MD04G1241000 Malus domestica HOM05D007504 ORTHO05D007629 3.4e-27 127.5 582 28.0
Glyma.20G219900 Glycine max HOM05D007504 ORTHO05D007629 7.5e-27 126.3 605 26.9
arahy.Tifrunner.gnm1.ann1.DN7JE5 Arachis hypogaea HOM05D007504 ORTHO05D007629 2.2e-26 124.8 676 26.2
CAN.G29.22 Capsicum annuum HOM05D007504 ORTHO05D007629 2.2e-26 124.8 606 26.9
COL.COLO4_06844 Corchorus olitorius HOM05D007504 ORTHO05D007629 8.3e-26 122.9 802 24.9
FAN05G3219 Fragaria x ananassa HOM05D007504 ORTHO05D007629 1.2e-24 119.0 605 28.1
Potri.019G052300 Populus trichocarpa HOM05D007504 ORTHO05D007629 2.0e-24 118.2 590 27.1
Aqoxy2G03947 Aquilegia oxysepala HOM05D007504 ORTHO05D007629 3.5e-24 117.5 571 28.0
arahy.Tifrunner.gnm1.ann1.V3BTAU Arachis hypogaea HOM05D007504 ORTHO05D007629 1.0e-23 115.9 678 25.7
DCAR_029902 Daucus carota HOM05D007504 ORTHO05D007629 1.0e-23 115.9 679 24.9
Duzib177G0136 Durio zibethinus HOM05D007504 ORTHO05D007629 8.0e-21 106.3 517 27.5
QL01p050434 Quercus lobata HOM05D007504 ORTHO05D007629 4.0e-20 104.0 492 26.8
Ciclev10011923m.g Citrus clementina HOM05D007504 ORTHO05D007629 6.8e-20 103.2 416 29.6
MBI07_g00623_MAGBIO Magnolia biondii HOM05D007504 ORTHO05D007629 1.5e-19 102.1 650 24.6
THA.LOC104823805 Tarenaya hassleriana HOM05D009566 ORTHO05D007629 5.8e-19 100.1 573 25.0
GSVIVG01019149001 Vitis vinifera HOM05D007504 ORTHO05D007629 2.9e-18 97.8 169 38.5
Sabra19G0056400 Salix brachista HOM05D007504 ORTHO05D007629 3.7e-18 97.4 584 23.5
Sed0012429 Sechium edule HOM05D007504 ORTHO05D007629 4.9e-18 97.1 576 25.9
Sopen04g022690 Solanum pennellii HOM05D007504 ORTHO05D007629 1.1e-17 95.9 277 36.1
QL01p050471 Quercus lobata HOM05D007504 ORTHO05D007629 1.4e-17 95.5 68 64.7
PSO017G3378 Papaver somniferum HOM05D007504 ORTHO05D007629 3.2e-17 94.4 124 47.6
HPP92_009958 Vanilla planifolia HOM05D007504 ORTHO05D007629 3.2e-17 94.4 554 24.4
Lj7A601T114 Lonicera japonica HOM05D007504 ORTHO05D007629 5.4e-17 93.6 603 24.7
Psat6g051960 Pisum sativum HOM05D007504 ORTHO05D007629 1.2e-16 92.4 350 30.3
Prupe.6G358500 Prunus persica HOM05D007504 ORTHO05D007629 1.6e-16 92.0 557 25.3
CsaV3_1G037800 Cucumis sativus L. HOM05D007504 ORTHO05D007629 2.0e-16 91.7 571 24.7
CSS0029071 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 2.7e-16 91.3 73 63.0
Cpa.g.sc123.14 Carica papaya HOM05D007504 ORTHO05D007629 7.8e-16 89.7 76 55.3
Lalb_Chr21g0311381 Lupinus albus HOM05D007504 ORTHO05D007629 1.7e-15 88.6 561 25.3
TAR636G3585 Trochodendron aralioides HOM05D007504 ORTHO05D007629 3.0e-15 87.8 81 55.6
Oeu008540.1 Olea europaea HOM05D007504 ORTHO05D007629 3.9e-15 87.4 149 39.6
Thecc.05G204700 Theobroma cacao HOM05D007504 ORTHO05D007629 3.9e-15 87.4 454 28.2
CDE05G0344 Ceratophyllum demersum HOM05D007504 ORTHO05D007629 6.6e-15 86.7 163 34.4
CDE05G2205 Ceratophyllum demersum HOM05D007504 ORTHO05D007629 1.9e-14 85.1 153 35.9
CSS0043883 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 5.6e-14 83.6 449 26.1
TAR636G2263 Trochodendron aralioides HOM05D007504 ORTHO05D007629 7.3e-14 83.2 158 41.1
SEGI_35581 Sequoiadendron giganteum HOM05D007504 ORTHO05D007629 1.2e-13 82.4 66 59.1
ATR0609G092 Amborella trichopoda HOM05D007504 ORTHO05D007629 2.1e-13 81.6 69 59.4
Migut.F01885 Erythranthe guttata HOM05D007504 ORTHO05D007629 6.2e-13 80.1 106 43.4
AT5G36100 Arabidopsis thaliana HOM05D009566 ORTHO05D007629 1.1e-12 79.3 75 50.7
SGA_v2.0_scaffold10G05147 Striga asiatica HOM05D007504 ORTHO05D007629 1.4e-12 79.0 180 30.0
BcaB05g24082 Brassica carinata HOM05D009566 ORTHO05D007629 1.8e-12 78.6 100 43.0
THA.LOC104821804 Tarenaya hassleriana HOM05D009566 ORTHO05D007629 8.9e-12 76.3 101 42.6
CARHR216660 Cardamine hirsuta HOM05D009566 ORTHO05D007629 1.5e-11 75.5 105 41.0
Carub.0007s3177 Capsella rubella HOM05D009566 ORTHO05D007629 3.4e-11 74.3 101 40.6
Thhalv10005424m.g Eutrema salsugineum HOM05D009566 ORTHO05D007629 4.4e-11 73.9 88 44.3
ClCG01G008930 Citrullus lanatus HOM05D007504 ORTHO05D007629 5.8e-11 73.6 122 38.5
Phvul.010G077868 Phaseolus vulgaris HOM05D007504 ORTHO05D007629 5.8e-11 73.6 543 25.0
Aa31LG9G17880 Aethionema arabicum HOM05D009566 ORTHO05D007629 1.3e-10 72.4 68 48.5
MELO3C021807.2 Cucumis melo HOM05D007504 ORTHO05D007629 1.3e-10 72.4 181 30.4
Phvul.010G077946 Phaseolus vulgaris HOM05D007504 ORTHO05D007629 1.7e-10 72.0 73 49.3
SalBow6G5451 Salvia bowleyana HOM05D007504 ORTHO05D007629 2.9e-10 71.2 94 41.5
Sp5g19730 Schrenkiella parvula HOM05D009566 ORTHO05D007629 3.7e-10 70.9 188 31.4
Sp7g06100 Schrenkiella parvula HOM05D009566 ORTHO05D007629 6.4e-10 70.1 132 36.4
Aa31LG2G2280 Aethionema arabicum HOM05D009566 ORTHO05D007629 8.3e-10 69.7 72 44.4
C02p21140 Brassica napus HOM05D009566 ORTHO05D007629 1.9e-09 68.6 174 32.2
SHI33673 Sapria himalayana HOM05D007504 ORTHO05D000001 1.9e-09 68.6 130 33.8
BolC2t08254H Brassica oleracea HOM05D009566 ORTHO05D007629 2.4e-09 68.2 171 29.8
BcaB02g08045 Brassica carinata HOM05D009566 ORTHO05D007629 3.2e-09 67.8 103 36.9
BcaC03g14675 Brassica carinata HOM05D009566 ORTHO05D007629 3.2e-09 67.8 72 47.2
A02p13020 Brassica napus HOM05D009566 ORTHO05D007629 4.1e-09 67.4 90 42.2
Carub.0002s1043 Capsella rubella HOM05D009566 ORTHO05D007629 5.4e-09 67.0 180 30.6
BcaC02g09508 Brassica carinata HOM05D009566 ORTHO05D007629 9.2e-09 66.2 125 36.0
BraA04t16670Z Brassica rapa HOM05D009566 ORTHO05D007629 9.2e-09 66.2 78 42.3
A04p10080 Brassica napus HOM05D009566 ORTHO05D007629 1.6e-08 65.5 126 34.9
C04p43550 Brassica napus HOM05D009566 ORTHO05D007629 1.6e-08 65.5 161 31.1
BolC4t25935H Brassica oleracea HOM05D009566 ORTHO05D007629 2.1e-08 65.1 126 34.9
CARHR056580 Cardamine hirsuta HOM05D009566 ORTHO05D007629 2.1e-08 65.1 191 31.9
AL2G19730 Arabidopsis lyrata HOM05D009566 ORTHO05D007629 2.7e-08 64.7 191 30.9
Os12g0506700 Oryza sativa ssp. japonica HOM05D007504 ORTHO05D007629 3.5e-08 64.3 346 24.9
Glyma.10G170100 Glycine max HOM05D007504 ORTHO05D007629 4.6e-08 63.9 123 33.3
Nn1g08319 Nelumbo nucifera HOM05D007504 ORTHO05D007629 6.0e-08 63.5 50 62.0
BcaB06g27006 Brassica carinata HOM05D009566 ORTHO05D007629 6.6e-07 60.1 65 44.6
HanXRQChr05g0156881 Helianthus annuus HOM05D007504 ORTHO05D007629 8.6e-07 59.7 758 21.6
AL7G45070 Arabidopsis lyrata HOM05D009566 ORTHO05D007629 7.3e-06 56.6 146 32.2
BraA02t06358Z Brassica rapa HOM05D009566 ORTHO05D007629 7.3e-06 56.6 335 25.4
Haze_03334 Corylus avellana HOM05D007504 ORTHO05D007629 7.3e-06 56.6 86 41.9
AT1G65090 Arabidopsis thaliana HOM05D009566 ORTHO05D007629 9.5e-06 56.2 233 25.8


User provided reference genes

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