Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g195550 Amaranthus hybridus HOM05D006824 ORTHO05D008779 1.2e-135 486.5 235 100.0
AUR62000332 Chenopodium quinoa HOM05D006824 ORTHO05D008779 3.3e-98 362.1 258 69.8
AUR62006674 Chenopodium quinoa HOM05D006824 ORTHO05D008779 1.4e-96 356.7 254 69.3
EL10Ac4g09985 Beta vulgaris HOM05D006824 ORTHO05D008779 3.2e-93 345.5 254 68.5
TAR362G0347 Trochodendron aralioides HOM05D006824 ORTHO05D008779 2.1e-76 289.7 250 61.2
Lsat_1_v5_gn_9_48761 Lactuca sativa HOM05D006824 ORTHO05D008779 6.0e-76 288.1 257 58.8
TWI14G0776 Tripterygium wilfordii HOM05D006824 ORTHO05D008779 1.1e-74 283.9 251 59.8
Oeu010150.1 Olea europaea HOM05D006824 ORTHO05D008779 1.5e-74 283.5 244 59.4
Actinidia38928 Actinidia chinensis HOM05D006824 ORTHO05D008779 1.9e-74 283.1 202 65.8
GSVIVG01019144001 Vitis vinifera HOM05D006824 ORTHO05D008779 4.3e-74 282.0 196 69.9
vmacro06000 Vaccinium macrocarpon HOM05D006824 ORTHO05D008779 5.7e-74 281.6 203 66.0
Lj8A196G47 Lonicera japonica HOM05D006824 ORTHO05D008779 1.6e-73 280.0 218 62.8
Atru.chr12.2132 Acer truncatum HOM05D006824 ORTHO05D008779 2.8e-73 279.3 243 58.0
Dinv04348 Davidia involucrata HOM05D006824 ORTHO05D008779 2.8e-73 279.3 253 58.9
Thecc.05G206500 Theobroma cacao HOM05D006824 ORTHO05D008779 6.3e-73 278.1 245 60.0
Haze_04530 Corylus avellana HOM05D006824 ORTHO05D008779 1.4e-72 276.9 241 59.8
ECA232G2571 Erigeron canadensis HOM05D006824 ORTHO05D008779 1.4e-72 276.9 221 62.0
Gorai.003G050700 Gossypium raimondii HOM05D006824 ORTHO05D008779 1.4e-72 276.9 247 57.5
Nitab4.5_0005183g0030 Nicotiana tabacum HOM05D006824 ORTHO05D008779 1.8e-72 276.6 211 63.5
A07p26320 Brassica napus HOM05D006824 ORTHO05D008779 2.4e-72 276.2 206 65.5
BraA07t30276Z Brassica rapa HOM05D006824 ORTHO05D008779 3.1e-72 275.8 206 65.0
C06p28710 Brassica napus HOM05D006824 ORTHO05D008779 4.1e-72 275.4 206 66.5
CSS0012922 Camellia sinensis var. sinensis HOM05D006824 ORTHO05D008779 4.1e-72 275.4 200 65.5
CSS0029100 Camellia sinensis var. sinensis HOM05D006824 ORTHO05D008779 4.1e-72 275.4 200 65.5
CAN.G694.18 Capsicum annuum HOM05D006824 ORTHO05D008779 4.1e-72 275.4 211 64.0
Rhsim03G0265800 Rhododendron simsii HOM05D006824 ORTHO05D008779 4.1e-72 275.4 256 55.5
RcHm_v2.0_Chr3g0448181 Rosa chinensis HOM05D006824 ORTHO05D008779 4.1e-72 275.4 246 58.9
HanXRQChr11g0323941 Helianthus annuus HOM05D006824 ORTHO05D008779 5.3e-72 275.0 218 62.4
Potri.010G143000 Populus trichocarpa HOM05D006824 ORTHO05D008779 1.2e-71 273.9 244 57.0
Gohir.A02G138800 Gossypium hirsutum HOM05D006824 ORTHO05D008779 1.5e-71 273.5 224 60.3
Sp5g35980 Schrenkiella parvula HOM05D006824 ORTHO05D008779 2.0e-71 273.1 202 66.3
CANSAT54G2581 Cannabis sativa HOM05D006824 ORTHO05D008779 3.4e-71 272.3 248 56.9
Prupe.6G359400 Prunus persica HOM05D006824 ORTHO05D008779 4.5e-71 271.9 261 55.9
PGSC0003DMG400023472 Solanum tuberosum HOM05D006824 ORTHO05D008779 4.5e-71 271.9 225 60.4
CARHR049030 Cardamine hirsuta HOM05D006824 ORTHO05D008779 5.9e-71 271.6 200 67.0
Medtr7g079530 Medicago truncatula HOM05D006824 ORTHO05D008779 5.9e-71 271.6 244 56.6
Duzib128G1599 Durio zibethinus HOM05D006824 ORTHO05D008779 1.3e-70 270.4 223 59.6
Lalb_Chr19g0126751 Lupinus albus HOM05D006824 ORTHO05D008779 1.3e-70 270.4 195 64.6
Sabra10G0110900 Salix brachista HOM05D006824 ORTHO05D008779 1.7e-70 270.0 240 57.9
Sopen05g034220 Solanum pennellii HOM05D006824 ORTHO05D008779 1.7e-70 270.0 222 61.3
Cc09_g03430 Coffea canephora HOM05D006824 ORTHO05D008779 2.9e-70 269.2 249 58.2
PGR031G0982 Punica granatum HOM05D006824 ORTHO05D008779 3.8e-70 268.9 245 54.7
Aa31LG4G40 Aethionema arabicum HOM05D006824 ORTHO05D008779 6.5e-70 268.1 209 64.6
FAN05G0802 Fragaria x ananassa HOM05D006824 ORTHO05D008779 1.1e-69 267.3 244 58.2
PSO170G6807 Papaver somniferum HOM05D006824 ORTHO05D008779 1.4e-69 266.9 219 60.3
Phvul.008G055700 Phaseolus vulgaris HOM05D006824 ORTHO05D008779 1.4e-69 266.9 213 60.6
TPR.G28449 Trifolium pratense HOM05D006824 ORTHO05D008779 1.4e-69 266.9 246 55.7
CiPaw.08G117600 Carya illinoinensis HOM05D006824 ORTHO05D008779 1.9e-69 266.5 200 65.0
MD12G1258900 Malus domestica HOM05D006824 ORTHO05D008779 3.2e-69 265.8 258 55.4
Manes.14G158930 Manihot esculenta HOM05D006824 ORTHO05D008779 3.2e-69 265.8 253 54.5
AL2G41760 Arabidopsis lyrata HOM05D006824 ORTHO05D008779 4.2e-69 265.4 198 66.2
Glyma.09G252100 Glycine max HOM05D006824 ORTHO05D008779 5.5e-69 265.0 201 63.2
COL.COLO4_19831 Corchorus olitorius HOM05D006824 ORTHO05D008779 1.2e-68 263.8 244 57.4
Thhalv10019052m.g Eutrema salsugineum HOM05D006824 ORTHO05D008779 1.2e-68 263.8 198 65.2
Aqoxy5G00154 Aquilegia oxysepala HOM05D006824 ORTHO05D008779 2.1e-68 263.1 231 59.7
BolC6t38040H Brassica oleracea HOM05D006824 ORTHO05D008779 2.1e-68 263.1 229 59.0
CDE09G0666 Ceratophyllum demersum HOM05D006824 ORTHO05D008779 2.1e-68 263.1 203 64.0
Sed0011929 Sechium edule HOM05D006824 ORTHO05D008779 2.1e-68 263.1 254 57.1
Glyma.18G240500 Glycine max HOM05D006824 ORTHO05D008779 2.7e-68 262.7 222 59.0
VMungo1383G3541 Vigna mungo HOM05D006824 ORTHO05D008779 3.5e-68 262.3 213 60.1
Eucgr.H01379 Eucalyptus grandis HOM05D006824 ORTHO05D008779 7.9e-68 261.2 201 62.2
Ca_07965_v3 Cicer arietinum L. HOM05D006824 ORTHO05D008779 1.0e-67 260.8 246 54.5
CDE02G0053 Ceratophyllum demersum HOM05D006824 ORTHO05D008779 1.3e-67 260.4 240 58.3
arahy.Tifrunner.gnm1.ann1.3Y20MY Arachis hypogaea HOM05D006824 ORTHO05D008779 1.8e-67 260.0 212 60.4
Carub.0002s2772 Capsella rubella HOM05D006824 ORTHO05D008779 1.8e-67 260.0 198 65.2
Psat3g104840 Pisum sativum HOM05D006824 ORTHO05D008779 1.8e-67 260.0 200 62.5
THA.LOC104813550 Tarenaya hassleriana HOM05D006824 ORTHO05D008779 1.8e-67 260.0 198 64.1
DCAR_005505 Daucus carota HOM05D006824 ORTHO05D008779 3.0e-67 259.2 221 58.8
arahy.Tifrunner.gnm1.ann1.8HY0WZ Arachis hypogaea HOM05D006824 ORTHO05D008779 3.9e-67 258.8 212 59.9
ClCG11G010940 Citrullus lanatus HOM05D006824 ORTHO05D008779 3.3e-66 255.8 197 62.9
FAN02G3690 Fragaria x ananassa HOM05D006824 ORTHO05D008779 3.7e-65 252.3 251 54.6
CsaV3_2G009540 Cucumis sativus L. HOM05D006824 ORTHO05D008779 6.3e-65 251.5 266 50.8
Migut.F01795 Erythranthe guttata HOM05D006824 ORTHO05D008779 8.2e-65 251.1 234 53.4
AT1G79790 Arabidopsis thaliana HOM05D006824 ORTHO05D008779 2.0e-63 246.5 227 56.8
SGA_v2.0_scaffold13G06472 Striga asiatica HOM05D006824 ORTHO05D008779 1.3e-62 243.8 237 54.4
SalBow3G1586 Salvia bowleyana HOM05D006824 ORTHO05D008779 2.2e-62 243.0 262 49.6
Lj1g0017863 Lotus japonicus HOM05D006824 ORTHO05D008779 5.0e-62 241.9 209 60.8
FAN14G1847 Fragaria x ananassa HOM05D006824 ORTHO05D008779 1.1e-61 240.7 236 56.4
HPP92_009935 Vanilla planifolia HOM05D006824 ORTHO05D008779 1.1e-61 240.7 180 66.1
Ciclev10012732m.g Citrus clementina HOM05D006824 ORTHO05D008779 1.6e-60 236.9 210 59.5
Nn1g09799 Nelumbo nucifera HOM05D006824 ORTHO05D008779 2.3e-59 233.0 212 58.5
SMO361G0474 Selaginella moellendorffii HOM05D006824 ORTHO05D008779 2.0e-55 219.9 214 52.3
Hma1.2p1_0171F.1_g075760 Hydrangea macrophylla HOM05D006824 ORTHO05D008779 5.9e-55 218.4 133 75.9
Zm00001eb169290 Zea mays HOM05D006824 ORTHO05D008779 5.9e-55 218.4 153 65.4
Gohir.D03G049300 Gossypium hirsutum HOM05D006824 ORTHO05D008779 2.9e-54 216.1 179 59.8
Cpa.g.sc123.9 Carica papaya HOM05D006824 ORTHO05D008779 5.0e-54 215.3 161 64.6
Nitab4.5_0009285g0020 Nicotiana tabacum HOM05D006824 ORTHO05D008779 5.0e-54 215.3 164 64.6
AagrBONN_evm.TU.Sc2ySwM_344.3559 Anthoceros agrestis HOM05D006824 ORTHO05D008779 6.5e-54 214.9 194 54.1
FvH4_6g00710 Fragaria vesca HOM05D006824 ORTHO05D008779 8.5e-54 214.5 181 62.4
MELO3C008753.2 Cucumis melo HOM05D006824 ORTHO05D008779 4.2e-53 212.2 232 50.0
CBR_g54655 Chara braunii HOM05D006824 ORTHO05D008779 5.5e-53 211.8 194 52.6
MELO3C025302.2 Cucumis melo HOM05D006824 ORTHO05D008779 5.5e-53 211.8 163 62.6
Hund07329 Selenicereus undatus HOM05D006824 ORTHO05D008779 5.5e-53 211.8 229 52.8
Pp3c3_9990 Physcomitrium patens HOM05D006824 ORTHO05D008779 7.2e-53 211.5 199 50.3
Mapoly0002s0020 Marchantia polymorpha HOM05D006824 ORTHO05D008779 4.4e-50 202.2 193 49.2
MBI08_g02107_MAGBIO Magnolia biondii HOM05D006824 ORTHO05D008779 1.3e-49 200.7 166 59.6
Cre13.g563200 Chlamydomonas reinhardtii HOM05D006824 ORTHO05D008779 2.0e-42 176.8 197 46.2
Nitab4.5_0008294g0020 Nicotiana tabacum HOM05D006824 ORTHO05D008779 7.0e-40 168.3 229 46.3
SalBow3G1143 Salvia bowleyana HOM05D006824 ORTHO05D008779 3.5e-39 166.0 168 51.2
MD04G1242100 Malus domestica HOM05D006824 ORTHO05D008779 5.0e-38 162.2 109 68.8
QL01p046721 Quercus lobata HOM05D006824 ORTHO05D008779 8.0e-36 154.8 118 61.0
PRCOL_00006210 Prasinoderma coloniale HOM05D006824 ORTHO05D008779 1.4e-27 127.5 184 37.0
arahy.Tifrunner.gnm1.ann1.EIZA4A Arachis hypogaea HOM05D006824 ORTHO05D008779 8.8e-27 124.8 104 58.7
arahy.Tifrunner.gnm1.ann1.JEI8NT Arachis hypogaea HOM05D006824 ORTHO05D008779 1.1e-24 117.9 144 44.4
FAN09G4644 Fragaria x ananassa HOM05D006824 ORTHO05D008779 1.7e-22 110.5 79 67.1
Solyc05g055820.3 Solanum lycopersicum HOM05D006824 ORTHO05D008779 1.2e-20 104.4 91 57.1
Psat3g104160 Pisum sativum HOM05D006824 ORTHO05D008779 8.9e-19 98.2 62 72.6
SEGI_14412 Sequoiadendron giganteum HOM05D006824 ORTHO05D008779 2.0e-18 97.1 55 78.2
ATR0824G111 Amborella trichopoda HOM05D006824 ORTHO05D008779 9.2e-16 88.2 64 65.6
CARHR074720 Cardamine hirsuta HOM05D006824 ORTHO05D008779 7.8e-15 85.1 88 48.9
MD04G1242000 Malus domestica HOM05D006824 ORTHO05D008779 1.4e-11 74.3 53 58.5
arahy.Tifrunner.gnm1.ann1.X7EDXL Arachis hypogaea HOM05D006824 ORTHO05D021501 5.2e-11 72.4 53 66.0
ATR0263G001 Amborella trichopoda HOM05D006824 ORTHO05D008779 1.4e-08 64.3 54 51.9
arahy.Tifrunner.gnm1.ann1.LN2II4 Arachis hypogaea HOM05D006661 ORTHO05D021501 9.2e-08 61.6 91 40.7
arahy.Tifrunner.gnm1.ann1.0X0W56 Arachis hypogaea HOM05D006824 ORTHO05D021501 3.5e-07 59.7 90 40.0
arahy.Tifrunner.gnm1.ann1.2JVF5K Arachis hypogaea HOM05D001175 ORTHO05D021501 3.5e-07 59.7 90 40.0
arahy.Tifrunner.gnm1.ann1.96LZZJ Arachis hypogaea HOM05D006824 ORTHO05D021501 3.5e-07 59.7 90 40.0
arahy.Tifrunner.gnm1.ann1.DM3ST4 Arachis hypogaea HOM05D006824 ORTHO05D021501 3.5e-07 59.7 90 40.0


User provided reference genes

Program Settings