Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g194900 Amaranthus hybridus HOM05D005230 ORTHO05D006506 4.2e-235 817.8 451 100.0
AUR62006575 Chenopodium quinoa HOM05D005230 ORTHO05D006506 1.1e-171 607.1 464 77.2
AUR62000229 Chenopodium quinoa HOM05D005230 ORTHO05D006506 1.9e-171 606.3 464 76.7
Hund07409 Selenicereus undatus HOM05D005230 ORTHO05D006506 2.1e-170 602.8 468 74.6
EL10Ac4g10073 Beta vulgaris HOM05D005230 ORTHO05D006506 2.8e-162 575.9 470 67.7
CSS0035138 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 1.7e-156 556.6 462 71.2
CSS0009799 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 2.3e-156 556.2 462 71.0
Dinv29329 Davidia involucrata HOM05D005230 ORTHO05D006506 3.9e-156 555.4 462 71.6
Prupe.4G269500 Prunus persica HOM05D005230 ORTHO05D006506 5.6e-155 551.6 462 70.8
GSVIVG01020254001 Vitis vinifera HOM05D005230 ORTHO05D006506 9.6e-155 550.8 463 71.1
CiPaw.13G147000 Carya illinoinensis HOM05D005230 ORTHO05D006506 2.8e-154 549.3 462 71.2
TWI75G0256 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 2.8e-154 549.3 462 68.8
Manes.05G199900 Manihot esculenta HOM05D005230 ORTHO05D006506 4.8e-154 548.5 462 69.5
CANSAT54G1170 Cannabis sativa HOM05D005230 ORTHO05D006506 1.4e-153 547.0 462 70.1
Lsat_1_v5_gn_2_32160 Lactuca sativa HOM05D005230 ORTHO05D006506 6.9e-153 544.7 460 69.8
Nn7g36961 Nelumbo nucifera HOM05D005230 ORTHO05D006506 2.6e-152 542.7 467 69.6
Peaxi162Scf00978g00317 Petunia axillaris HOM05D005230 ORTHO05D006506 2.6e-152 542.7 459 69.5
Cc01_g07300 Coffea canephora HOM05D005230 ORTHO05D006506 5.8e-152 541.6 462 70.1
Potri.009G066400 Populus trichocarpa HOM05D005230 ORTHO05D006506 5.8e-152 541.6 460 67.6
Lj4g0004497 Lotus japonicus HOM05D005230 ORTHO05D006506 1.3e-151 540.4 461 69.0
Sabra16G0167000 Salix brachista HOM05D005230 ORTHO05D006506 1.7e-151 540.0 460 67.8
PGSC0003DMG400027416 Solanum tuberosum HOM05D005230 ORTHO05D006506 4.9e-151 538.5 462 69.0
Potri.001G271800 Populus trichocarpa HOM05D005230 ORTHO05D006506 6.4e-151 538.1 460 67.8
Haze_23295 Corylus avellana HOM05D005230 ORTHO05D006506 8.4e-151 537.7 461 69.6
Sabra09G0049500 Salix brachista HOM05D005230 ORTHO05D006506 1.1e-150 537.3 460 68.3
CAN.G280.6 Capsicum annuum HOM05D005230 ORTHO05D006506 1.4e-150 537.0 462 68.8
Oeu025950.1 Olea europaea HOM05D005230 ORTHO05D006506 1.4e-150 537.0 460 68.0
Actinidia06848 Actinidia chinensis HOM05D005230 ORTHO05D006506 1.9e-150 536.6 460 69.6
Aqoxy1G00076 Aquilegia oxysepala HOM05D005230 ORTHO05D006506 2.4e-150 536.2 464 67.5
ECA238G4724 Erigeron canadensis HOM05D005230 ORTHO05D006506 2.4e-150 536.2 460 68.7
Eucgr.B03758 Eucalyptus grandis HOM05D005230 ORTHO05D006506 2.4e-150 536.2 462 69.3
Manes.01G177100 Manihot esculenta HOM05D005230 ORTHO05D006506 5.4e-150 535.0 463 68.7
Sopen11g029740 Solanum pennellii HOM05D005230 ORTHO05D006506 9.3e-150 534.3 462 68.6
Rhsim13G0231000 Rhododendron simsii HOM05D005230 ORTHO05D006506 1.2e-149 533.9 460 69.3
Solyc11g072090.2 Solanum lycopersicum HOM05D005230 ORTHO05D006506 3.5e-149 532.3 462 68.4
QL01p016185 Quercus lobata HOM05D005230 ORTHO05D006506 6.0e-149 531.6 462 69.5
MD03G1163000 Malus domestica HOM05D005230 ORTHO05D006506 1.3e-148 530.4 462 68.6
DCAR_031608 Daucus carota HOM05D005230 ORTHO05D006506 1.8e-148 530.0 462 67.3
Actinidia16258 Actinidia chinensis HOM05D005230 ORTHO05D006506 5.1e-148 528.5 460 69.1
Psat7g073480 Pisum sativum HOM05D005230 ORTHO05D006506 8.7e-148 527.7 460 67.6
Thecc.09G252100 Theobroma cacao HOM05D005230 ORTHO05D006506 8.7e-148 527.7 462 68.2
ClCG03G014290 Citrullus lanatus HOM05D005230 ORTHO05D006506 4.3e-147 525.4 462 68.0
Sed0024170 Sechium edule HOM05D005230 ORTHO05D006506 4.8e-146 521.9 462 68.2
TWI31G0483 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 4.8e-146 521.9 462 67.3
Oeu032061.2 Olea europaea HOM05D005230 ORTHO05D006506 1.1e-145 520.8 493 64.7
Lalb_Chr07g0186541 Lupinus albus HOM05D005230 ORTHO05D006506 2.4e-145 519.6 460 67.8
MSTRG.21320 Avicennia marina HOM05D005230 ORTHO05D006506 4.0e-145 518.8 462 66.5
CDE08G0498 Ceratophyllum demersum HOM05D005230 ORTHO05D006506 5.3e-145 518.5 463 58.5
Haze_23300 Corylus avellana HOM05D005230 ORTHO05D006506 1.5e-144 516.9 504 58.1
FAN23G0348 Fragaria x ananassa HOM05D005230 ORTHO05D006506 2.0e-144 516.5 462 66.7
COL.COLO4_33253 Corchorus olitorius HOM05D005230 ORTHO05D006506 2.6e-144 516.2 462 67.1
FvH4_1g25390 Fragaria vesca HOM05D005230 ORTHO05D006506 2.6e-144 516.2 462 66.7
MELO3C015608.2 Cucumis melo HOM05D005230 ORTHO05D006506 3.4e-144 515.8 462 67.3
Aa31LG1G8850 Aethionema arabicum HOM05D005230 ORTHO05D006506 4.5e-144 515.4 460 65.0
CsaV3_1G041930 Cucumis sativus L. HOM05D005230 ORTHO05D006506 4.5e-144 515.4 462 67.3
Atru.chr3.2845 Acer truncatum HOM05D005230 ORTHO05D006506 5.8e-144 515.0 464 61.0
Cpa.g.sc34.203 Carica papaya HOM05D005230 ORTHO05D006506 9.9e-144 514.2 462 67.5
HanXRQChr13g0402151 Helianthus annuus HOM05D005230 ORTHO05D006506 9.9e-144 514.2 459 65.8
RcHm_v2.0_Chr2g0123421 Rosa chinensis HOM05D005230 ORTHO05D006506 9.9e-144 514.2 462 67.1
FAN28G1729 Fragaria x ananassa HOM05D005230 ORTHO05D006506 1.3e-143 513.8 462 66.2
Glyma.08G113500 Glycine max HOM05D005230 ORTHO05D006506 1.7e-143 513.5 460 67.6
SGA_v2.0_scaffold29G12151 Striga asiatica HOM05D005230 ORTHO05D006506 1.7e-143 513.5 465 64.1
Phvul.002G235800 Phaseolus vulgaris HOM05D005230 ORTHO05D006506 2.2e-143 513.1 460 67.2
TPR.G24369 Trifolium pratense HOM05D005230 ORTHO05D006506 4.9e-143 511.9 459 66.0
Migut.D00707 Erythranthe guttata HOM05D005230 ORTHO05D006506 8.4e-143 511.1 476 64.9
Medtr8g085640 Medicago truncatula HOM05D005230 ORTHO05D006506 2.4e-142 509.6 455 66.8
Glyma.05G155700 Glycine max HOM05D005230 ORTHO05D006506 9.3e-142 507.7 460 67.2
Cfa009930 Carpinus fangiana HOM05D005230 ORTHO05D006506 2.7e-141 506.1 441 69.6
Duzib168G0825 Durio zibethinus HOM05D005230 ORTHO05D006506 3.5e-141 505.8 462 65.8
VMungo0251G0349 Vigna mungo HOM05D005230 ORTHO05D006506 4.6e-141 505.4 465 66.2
Nitab4.5_0002161g0080 Nicotiana tabacum HOM05D005230 ORTHO05D006506 7.9e-141 504.6 462 67.3
Ca_17953_v3 Cicer arietinum L. HOM05D005230 ORTHO05D006506 1.8e-140 503.4 460 66.3
FAN19G0408 Fragaria x ananassa HOM05D005230 ORTHO05D006506 1.8e-140 503.4 462 65.6
arahy.Tifrunner.gnm1.ann1.554KFZ Arachis hypogaea HOM05D005230 ORTHO05D006506 2.3e-140 503.1 460 60.0
arahy.Tifrunner.gnm1.ann1.YWPQ0A Arachis hypogaea HOM05D005230 ORTHO05D006506 2.3e-140 503.1 460 60.0
THA.LOC104811208 Tarenaya hassleriana HOM05D005230 ORTHO05D006506 6.7e-140 501.5 460 64.3
Ciclev10015197m.g Citrus clementina HOM05D005230 ORTHO05D006506 1.9e-139 500.0 465 65.6
SalBow6G0054 Salvia bowleyana HOM05D005230 ORTHO05D006506 1.9e-139 500.0 484 62.8
PSO339G0973 Papaver somniferum HOM05D005230 ORTHO05D006506 2.1e-138 496.5 460 65.9
PSO384G0943 Papaver somniferum HOM05D005230 ORTHO05D006506 8.2e-138 494.6 460 65.9
Duzib150G1312 Durio zibethinus HOM05D005230 ORTHO05D006506 1.1e-137 494.2 462 65.6
Lj2C810G6 Lonicera japonica HOM05D005230 ORTHO05D006506 4.2e-134 482.3 463 62.9
A02p05570 Brassica napus HOM05D005230 ORTHO05D006506 3.5e-133 479.2 457 63.5
A10p20220 Brassica napus HOM05D005230 ORTHO05D006506 4.6e-133 478.8 462 62.8
BolC2t06957H Brassica oleracea HOM05D005230 ORTHO05D006506 6.0e-133 478.4 457 62.8
BNapus_Darmor_BZH_scaffold_38p02380 Brassica napus HOM05D005230 ORTHO05D006506 8.7e-132 474.6 457 63.0
BraA02t05508Z Brassica rapa HOM05D005230 ORTHO05D006506 1.9e-131 473.4 457 62.4
BraA10t44093Z Brassica rapa HOM05D005230 ORTHO05D006506 3.3e-131 472.6 467 62.1
FAN26G2809 Fragaria x ananassa HOM05D005230 ORTHO05D006506 5.7e-131 471.9 551 56.3
Gorai.004G013700 Gossypium raimondii HOM05D005230 ORTHO05D006506 1.3e-130 470.7 462 63.4
CARHR193430 Cardamine hirsuta HOM05D005230 ORTHO05D006506 8.2e-130 468.0 388 63.4
Gohir.D08G019200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 8.2e-130 468.0 462 63.0
Thhalv10013503m.g Eutrema salsugineum HOM05D005230 ORTHO05D006506 3.4e-128 462.6 389 62.7
Gohir.A08G009200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.0e-127 461.1 462 62.3
Sp6g24920 Schrenkiella parvula HOM05D005230 ORTHO05D006506 2.9e-127 459.5 388 63.4
ATR0307G025 Amborella trichopoda HOM05D005230 ORTHO05D006506 1.1e-126 457.6 462 59.1
Os06g0338900 Oryza sativa ssp. japonica HOM05D005230 ORTHO05D006506 2.5e-126 456.4 460 60.0
MBI13_g00890_MAGBIO Magnolia biondii HOM05D005230 ORTHO05D006506 3.2e-126 456.1 463 55.7
Gorai.006G123300 Gossypium raimondii HOM05D005230 ORTHO05D006506 5.5e-126 455.3 462 62.1
AL6G30990 Arabidopsis lyrata HOM05D005230 ORTHO05D006506 9.4e-126 454.5 390 62.1
Gohir.D09G105900 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.8e-124 450.3 462 61.7
Carub.0006s1783 Capsella rubella HOM05D005230 ORTHO05D006506 5.1e-124 448.7 461 59.7
AT5G19485 Arabidopsis thaliana HOM05D005230 ORTHO05D006506 4.3e-123 445.7 389 60.7
Gohir.A09G109300 Gossypium hirsutum HOM05D005230 ORTHO05D006506 3.7e-122 442.6 462 60.6
Sc16g0010870 Simmondsia chinensis HOM05D005230 ORTHO05D006506 1.8e-121 440.3 388 68.3
Nitab4.5_0002567g0160 Nicotiana tabacum HOM05D005230 ORTHO05D006506 2.2e-119 433.3 462 55.4
GSVIVG01002283001 Vitis vinifera HOM05D005230 ORTHO05D006506 3.6e-117 426.0 402 66.9
HPP92_016891 Vanilla planifolia HOM05D005230 ORTHO05D006506 6.1e-117 425.2 460 57.6
SEGI_36393 Sequoiadendron giganteum HOM05D005230 ORTHO05D006506 2.6e-112 409.8 464 55.2
vmacro04223 Vaccinium macrocarpon HOM05D005230 ORTHO05D006506 1.9e-110 403.7 496 54.2
unitig_0.g309 Utricularia gibba HOM05D005230 ORTHO05D006506 6.7e-108 395.2 463 54.6
PGR102G1412 Punica granatum HOM05D005230 ORTHO05D006506 4.1e-105 386.0 462 56.3
Pp3c16_600 Physcomitrium patens HOM05D005230 ORTHO05D006506 1.5e-99 367.5 470 51.3
Mapoly0070s0045 Marchantia polymorpha HOM05D005230 ORTHO05D006506 1.9e-94 350.5 466 48.1
Zm00001eb051600 Zea mays HOM05D005230 ORTHO05D006506 2.5e-94 350.1 365 55.3
SMO117G0151 Selaginella moellendorffii HOM05D005230 ORTHO05D006506 5.5e-86 322.4 465 46.2
TAR628G1140 Trochodendron aralioides HOM05D005230 ORTHO05D006506 1.5e-78 297.7 343 49.9
Dinv24610 Davidia involucrata HOM05D005230 ORTHO05D006506 1.7e-74 284.3 306 55.6
C09p56810 Brassica napus HOM05D005230 ORTHO05D006506 3.7e-58 229.9 292 56.8
BolC9t58535H Brassica oleracea HOM05D005230 ORTHO05D006506 1.7e-50 204.5 181 62.4
Mapoly0050s0011 Marchantia polymorpha HOM05D005230 ORTHO05D006506 6.0e-48 196.1 401 35.2
CBR_g54067 Chara braunii HOM05D005230 ORTHO05D006506 1.7e-47 194.5 464 37.5
MCO03G336 Micromonas commoda HOM05D005230 ORTHO05D006506 9.3e-41 172.2 405 31.1
Mapoly0050s0012 Marchantia polymorpha HOM05D005230 ORTHO05D006506 6.0e-40 169.5 243 45.3
Cre03.g207825 Chlamydomonas reinhardtii HOM05D005230 ORTHO05D006506 1.3e-39 168.3 506 35.6
Duzib150G0729 Durio zibethinus HOM05D005230 ORTHO05D006506 2.3e-39 167.5 160 58.1
Mapoly0070s0046 Marchantia polymorpha HOM05D005230 ORTHO05D006506 5.4e-33 146.4 156 52.6
PRCOL_00006600 Prasinoderma coloniale HOM05D005230 ORTHO05D006506 1.6e-32 144.8 509 31.8
CSS0018745 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 5.1e-31 139.8 104 67.3
Gohir.A05G264150 Gossypium hirsutum HOM05D005230 ORTHO05D006506 9.6e-30 135.6 104 64.4
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 3.4e-27 127.1 126 58.7
FvH4_4g06340 Fragaria vesca HOM05D005230 ORTHO05D006506 1.5e-22 111.7 98 62.2
Sed0001059 Sechium edule HOM05D005230 ORTHO05D006506 3.1e-20 104.0 97 83.5
BcaC04g24210 Brassica carinata HOM05D005230 ORTHO05D006506 6.9e-20 102.8 68 77.9
Nn7g36957 Nelumbo nucifera HOM05D005230 ORTHO05D006506 2.9e-18 97.4 55 90.9
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 6.5e-18 96.3 202 36.1
Psat2g003760 Pisum sativum HOM05D005230 ORTHO05D006506 1.8e-15 88.2 82 61.0
Psat0s3158g0040 Pisum sativum HOM05D005230 ORTHO05D320643 7.7e-11 72.8 62 56.5
TAR623G0477 Trochodendron aralioides HOM05D005230 ORTHO05D006506 1.9e-09 68.2 37 91.9
Dinv24611 Davidia involucrata HOM05D005230 ORTHO05D006506 7.2e-09 66.2 49 73.5
Psat4g142680 Pisum sativum HOM05D000493 ORTHO05D001638 2.1e-08 64.7 59 52.5
Psat4g142760 Pisum sativum HOM05D000493 ORTHO05D004446 2.7e-08 64.3 67 46.3
Psat0s472g0120 Pisum sativum HOM05D005230 ORTHO05D023087 7.9e-08 62.8 59 52.5


User provided reference genes

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