Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g194750 Amaranthus hybridus HOM05D002956 ORTHO05D009000 1.1e-167 593.2 295 100.0
AUR62006560 Chenopodium quinoa HOM05D002956 ORTHO05D009000 1.6e-110 403.3 295 71.5
AUR62000215 Chenopodium quinoa HOM05D002956 ORTHO05D009000 2.4e-106 389.4 274 73.0
EL10Ac4g10093 Beta vulgaris HOM05D002956 ORTHO05D009000 3.3e-103 379.0 300 70.0
Dinv04582 Davidia involucrata HOM05D000102 ORTHO05D000138 1.1e-74 284.3 282 57.4
Potri.009G068300 Populus trichocarpa HOM05D002956 ORTHO05D009000 1.1e-74 284.3 302 53.6
Sc16g0010930 Simmondsia chinensis HOM05D002956 ORTHO05D009000 1.1e-74 284.3 268 60.8
Hma1.2p1_0460F.1_g157580 Hydrangea macrophylla HOM05D002956 ORTHO05D009000 1.2e-73 280.8 282 56.4
TAR633G2508 Trochodendron aralioides HOM05D002956 ORTHO05D009000 1.2e-73 280.8 253 58.1
Actinidia06979 Actinidia chinensis HOM05D002956 ORTHO05D009000 2.7e-73 279.6 295 54.2
CSS0047298 Camellia sinensis var. sinensis HOM05D002956 ORTHO05D009000 7.8e-73 278.1 287 55.4
Manes.02G137000 Manihot esculenta HOM05D002956 ORTHO05D009000 1.3e-72 277.3 283 55.1
QL01p016676 Quercus lobata HOM05D002956 ORTHO05D009000 1.3e-72 277.3 291 55.7
Cfa009899 Carpinus fangiana HOM05D002956 ORTHO05D009000 1.7e-72 276.9 275 57.1
MBI19_g19212_MAGBIO Magnolia biondii HOM05D002956 ORTHO05D009000 5.1e-72 275.4 272 55.1
Thecc.09G246200 Theobroma cacao HOM05D002956 ORTHO05D009000 1.5e-71 273.9 257 58.8
Aqoxy2G00440 Aquilegia oxysepala HOM05D002956 ORTHO05D009000 2.5e-71 273.1 241 58.5
Duzib150G0064 Durio zibethinus HOM05D002956 ORTHO05D009000 5.6e-71 271.9 278 54.3
RcHm_v2.0_Chr5g0050271 Rosa chinensis HOM05D002956 ORTHO05D009000 5.6e-71 271.9 208 65.4
Gohir.A05G073600 Gossypium hirsutum HOM05D002956 ORTHO05D009000 2.1e-70 270.0 243 59.3
Glyma.08G154600 Glycine max HOM05D002956 ORTHO05D009000 6.2e-70 268.5 297 51.5
Aa31LG5G8950 Aethionema arabicum HOM05D002956 ORTHO05D009000 1.1e-69 267.7 258 55.0
Lj6g0021242 Lotus japonicus HOM05D002956 ORTHO05D009000 1.4e-69 267.3 280 51.8
Eucgr.B03751 Eucalyptus grandis HOM05D002956 ORTHO05D009000 2.4e-69 266.5 205 66.3
PSO339G4249 Papaver somniferum HOM05D002956 ORTHO05D009000 3.1e-69 266.2 211 65.9
Migut.D00676 Erythranthe guttata HOM05D002956 ORTHO05D009000 4.0e-69 265.8 257 55.3
PSO384G3893 Papaver somniferum HOM05D002956 ORTHO05D009000 4.0e-69 265.8 274 55.1
Gohir.D05G076500 Gossypium hirsutum HOM05D002956 ORTHO05D009000 5.3e-69 265.4 253 58.1
Gorai.009G077800 Gossypium raimondii HOM05D002956 ORTHO05D009000 5.3e-69 265.4 253 58.1
Oeu027216.2 Olea europaea HOM05D002956 ORTHO05D009000 6.9e-69 265.0 307 50.8
GSVIVG01037339001 Vitis vinifera HOM05D002956 ORTHO05D009000 6.9e-69 265.0 189 66.7
Cpa.g.sc34.182 Carica papaya HOM05D002956 ORTHO05D009000 9.0e-69 264.6 271 55.4
Sabra09G0051400 Salix brachista HOM05D002956 ORTHO05D009000 1.5e-68 263.8 298 52.0
SGA_v2.0_scaffold29G12222 Striga asiatica HOM05D002956 ORTHO05D009000 1.5e-68 263.8 303 49.8
ATR0307G004 Amborella trichopoda HOM05D002956 ORTHO05D009000 2.6e-68 263.1 215 60.9
arahy.Tifrunner.gnm1.ann1.NKUQ81 Arachis hypogaea HOM05D002956 ORTHO05D009000 2.6e-68 263.1 198 65.7
Cc01_g06260 Coffea canephora HOM05D002956 ORTHO05D009000 2.6e-68 263.1 289 51.9
FAN20G2737 Fragaria x ananassa HOM05D002956 ORTHO05D009000 5.8e-68 261.9 253 56.5
FAN27G0310 Fragaria x ananassa HOM05D002956 ORTHO05D009000 5.8e-68 261.9 218 61.5
Phvul.005G020500 Phaseolus vulgaris HOM05D002956 ORTHO05D009000 5.8e-68 261.9 278 52.5
unitig_8.g3652 Utricularia gibba HOM05D002956 ORTHO05D009000 5.8e-68 261.9 209 65.1
arahy.Tifrunner.gnm1.ann1.UED96S Arachis hypogaea HOM05D002956 ORTHO05D009000 7.6e-68 261.5 198 65.2
Solyc01g008700.4 Solanum lycopersicum HOM05D002956 ORTHO05D009000 7.6e-68 261.5 293 53.9
TWI31G1447 Tripterygium wilfordii HOM05D002956 ORTHO05D009000 9.9e-68 261.2 276 52.9
FAN22G1360 Fragaria x ananassa HOM05D002956 ORTHO05D009000 1.3e-67 260.8 218 61.5
CDE08G0764 Ceratophyllum demersum HOM05D002956 ORTHO05D009000 1.7e-67 260.4 258 55.0
Migut.N02380 Erythranthe guttata HOM05D002956 ORTHO05D009000 1.7e-67 260.4 226 61.1
PGR102G2739 Punica granatum HOM05D002956 ORTHO05D009000 1.7e-67 260.4 274 54.0
VMungo1080G0193 Vigna mungo HOM05D002956 ORTHO05D009000 2.2e-67 260.0 242 55.8
TPR.G11887 Trifolium pratense HOM05D002956 ORTHO05D009000 3.8e-67 259.2 229 59.4
MSTRG.17638 Avicennia marina HOM05D002956 ORTHO05D009000 6.4e-67 258.5 223 61.9
Ca_26337_v3 Cicer arietinum L. HOM05D002956 ORTHO05D009000 6.4e-67 258.5 265 54.3
Ciclev10016188m.g Citrus clementina HOM05D002956 ORTHO05D009000 6.4e-67 258.5 235 54.5
Carub.0004s0731 Capsella rubella HOM05D002956 ORTHO05D009000 8.4e-67 258.1 260 54.6
Glyma.15G273500 Glycine max HOM05D002956 ORTHO05D009000 1.1e-66 257.7 298 50.3
Lsat_1_v5_gn_5_63121 Lactuca sativa HOM05D002956 ORTHO05D009000 1.1e-66 257.7 288 53.1
MD00G1148000 Malus domestica HOM05D002956 ORTHO05D009000 1.1e-66 257.7 256 55.5
Medtr3g437110 Medicago truncatula HOM05D002956 ORTHO05D009000 1.1e-66 257.7 266 53.8
CsaV3_6G038840 Cucumis sativus L. HOM05D002956 ORTHO05D009000 1.4e-66 257.3 269 54.3
FvH4_2g35650 Fragaria vesca HOM05D002956 ORTHO05D009000 1.4e-66 257.3 218 60.6
MD00G1134800 Malus domestica HOM05D002956 ORTHO05D009000 3.2e-66 256.1 196 65.8
Atru.chr3.2859 Acer truncatum HOM05D002956 ORTHO05D009000 4.2e-66 255.8 209 59.3
Sopen01g004220 Solanum pennellii HOM05D002956 ORTHO05D009000 4.2e-66 255.8 273 55.7
Lalb_Chr15g0078501 Lupinus albus HOM05D002956 ORTHO05D009000 7.1e-66 255.0 274 52.2
CANSAT54G2237 Cannabis sativa HOM05D002956 ORTHO05D009000 9.3e-66 254.6 291 51.5
Peaxi162Scf00032g02025 Petunia axillaris HOM05D002956 ORTHO05D009000 9.3e-66 254.6 310 50.3
AL4G20050 Arabidopsis lyrata HOM05D002956 ORTHO05D009000 6.0e-65 251.9 214 61.2
PGSC0003DMG400004431 Solanum tuberosum HOM05D002956 ORTHO05D009000 6.0e-65 251.9 276 54.7
THA.LOC104826457 Tarenaya hassleriana HOM05D002956 ORTHO05D009000 1.3e-64 250.8 212 59.9
DCAR_006895 Daucus carota HOM05D002956 ORTHO05D009000 2.3e-64 250.0 214 62.1
FAN15G3287 Fragaria x ananassa HOM05D002956 ORTHO05D009000 3.0e-64 249.6 253 54.2
MELO3C014549.2 Cucumis melo HOM05D002956 ORTHO05D009000 5.1e-64 248.8 287 50.9
ECA233G2896 Erigeron canadensis HOM05D000003 ORTHO05D009000 2.5e-63 246.5 169 71.6
Thhalv10002070m.g Eutrema salsugineum HOM05D002956 ORTHO05D009000 1.6e-62 243.8 208 60.1
HanXRQChr12g0380431 Helianthus annuus HOM05D002956 ORTHO05D009000 1.6e-62 243.8 254 52.8
HPP92_025063 Vanilla planifolia HOM05D002956 ORTHO05D009000 2.1e-62 243.4 261 52.9
BcaB01g03033 Brassica carinata HOM05D002956 ORTHO05D008031 4.8e-62 242.3 212 60.8
Haze_23260 Corylus avellana HOM05D002956 ORTHO05D009000 4.8e-62 242.3 344 45.3
C03p32170 Brassica napus HOM05D002956 ORTHO05D008031 4.0e-61 239.2 209 61.2
SalBow6G2483 Salvia bowleyana HOM05D002956 ORTHO05D009000 4.0e-61 239.2 221 59.3
BcaC01g04913 Brassica carinata HOM05D002956 ORTHO05D008031 1.2e-60 237.7 209 60.8
BolC3t15559H Brassica oleracea HOM05D002956 ORTHO05D008031 1.2e-60 237.7 209 60.8
Thhalv10002099m.g Eutrema salsugineum HOM05D002956 ORTHO05D009000 2.6e-60 236.5 165 69.1
A03p26830 Brassica napus HOM05D002956 ORTHO05D008031 1.3e-59 234.2 210 58.1
Nitab4.5_0000390g0150 Nicotiana tabacum HOM05D002956 ORTHO05D009000 1.7e-59 233.8 290 49.3
AT2G26840 Arabidopsis thaliana HOM05D002956 ORTHO05D009000 2.2e-59 233.4 273 47.6
BraA03t11895Z Brassica rapa HOM05D002956 ORTHO05D008031 2.2e-59 233.4 207 58.5
Zm00001eb128680 Zea mays HOM05D002956 ORTHO05D009000 2.1e-54 216.9 191 57.1
Rhsim13G0206200 Rhododendron simsii HOM05D002956 ORTHO05D009000 9.0e-53 211.5 415 38.1
Os01g0268900 Oryza sativa ssp. japonica HOM05D002956 ORTHO05D009000 3.4e-52 209.5 191 55.0
Sp4g08630 Schrenkiella parvula HOM05D002956 ORTHO05D009000 1.0e-48 198.0 182 57.1
Pp3c23_20070 Physcomitrium patens HOM05D002956 ORTHO05D009000 5.7e-47 192.2 203 48.3
Mapoly0206s0003 Marchantia polymorpha HOM05D002956 ORTHO05D009000 1.6e-46 190.7 161 54.0
ClCG02G022720 Citrullus lanatus HOM05D002956 ORTHO05D009000 4.8e-46 189.1 288 44.4
CBR_g32285 Chara braunii HOM05D002956 ORTHO05D009000 2.6e-44 183.3 187 47.1
SMO367G0391 Selaginella moellendorffii HOM05D002956 ORTHO05D009000 5.9e-44 182.2 198 48.0
Nn7g36832 Nelumbo nucifera HOM05D002956 ORTHO05D009000 1.7e-43 180.6 288 43.8
Duzib168G2273 Durio zibethinus HOM05D002956 ORTHO05D009000 1.4e-40 171.0 160 56.9
COL.COLO4_07383 Corchorus olitorius HOM05D002956 ORTHO05D009000 4.8e-38 162.5 258 42.6
AL5G21910 Arabidopsis lyrata HOM05D002956 ORTHO05D009000 8.5e-35 151.8 189 41.8
Nitab4.5_0006687g0020 Nicotiana tabacum HOM05D002956 ORTHO05D009000 1.0e-32 144.8 86 76.7
CiPaw.14G111100 Carya illinoinensis HOM05D002956 ORTHO05D009000 2.2e-30 137.1 186 47.8
AagrBONN_evm.TU.Sc2ySwM_228.3484 Anthoceros agrestis HOM05D002956 ORTHO05D009000 2.2e-27 127.1 141 48.9
MCO16G644 Micromonas commoda HOM05D002956 ORTHO05D009000 8.5e-27 125.2 160 43.1
Nitab4.5_0006687g0010 Nicotiana tabacum HOM05D002956 ORTHO05D000001 6.7e-24 115.5 203 41.4
AT3G43910 Arabidopsis thaliana HOM05D002956 ORTHO05D009000 5.7e-23 112.5 189 37.0
Prupe.4G260500 Prunus persica HOM05D002956 ORTHO05D009000 3.5e-20 103.2 104 53.8
Psat5g240480 Pisum sativum HOM05D002956 ORTHO05D009000 2.2e-19 100.5 167 39.5
CiPaw.13G148600 Carya illinoinensis HOM05D002956 ORTHO05D009000 2.9e-19 100.1 291 33.7
Sed0027603 Sechium edule HOM05D002956 ORTHO05D009000 2.9e-19 100.1 165 40.0
CARHR119020 Cardamine hirsuta HOM05D002956 ORTHO05D009000 9.4e-18 95.1 103 51.5
CARHR035860 Cardamine hirsuta HOM05D002956 ORTHO05D009000 4.5e-12 76.3 92 42.4
PRCOL_00003518 Prasinoderma coloniale HOM05D002956 ORTHO05D009000 9.4e-10 68.6 66 54.5
Cre04.g218000 Chlamydomonas reinhardtii HOM05D002956 ORTHO05D009000 1.6e-09 67.8 102 38.2
CARHR035850 Cardamine hirsuta HOM05D002956 ORTHO05D009000 3.6e-09 66.6 76 51.3


User provided reference genes

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