Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g194610 Amaranthus hybridus HOM05D006694 ORTHO05D008240 2.8e-89 334.0 694 100.0
AUR62006546 Chenopodium quinoa HOM05D006694 ORTHO05D008240 2.1e-36 158.3 110 70.0
Hund21974 Selenicereus undatus HOM05D006179 ORTHO05D008240 2.1e-36 158.3 110 69.1
EL10Ac4g10114 Beta vulgaris HOM05D006694 ORTHO05D008240 4.4e-34 150.6 95 74.7
CiPaw.14G112300 Carya illinoinensis HOM05D006694 ORTHO05D008240 5.8e-26 123.6 112 52.7
Hma1.2p1_1099F.1_g256830 Hydrangea macrophylla HOM05D006694 ORTHO05D008240 3.5e-23 114.4 112 48.2
Haze_23236 Corylus avellana HOM05D006694 ORTHO05D008240 1.3e-22 112.5 111 48.6
Sc16g0011010 Simmondsia chinensis HOM05D006694 ORTHO05D008240 3.0e-22 111.3 135 48.1
Oeu043278.1 Olea europaea HOM05D006694 ORTHO05D008240 8.7e-22 109.8 112 48.2
Haze_23854 Corylus avellana HOM05D006694 ORTHO05D008240 1.9e-21 108.6 112 46.4
Migut.D00664 Erythranthe guttata HOM05D006694 ORTHO05D008240 4.3e-21 107.5 112 46.4
LjContig00485g0019324 Lotus japonicus HOM05D006694 ORTHO05D008240 2.1e-20 105.1 112 48.2
MD08G1215500 Malus domestica HOM05D006694 ORTHO05D008240 2.8e-20 104.8 111 43.2
QL01p017030 Quercus lobata HOM05D006694 ORTHO05D008240 8.1e-20 103.2 110 44.5
CSS0033907 Camellia sinensis var. sinensis HOM05D006694 ORTHO05D008240 3.1e-19 101.3 113 41.6
LjContig00485g0005104 Lotus japonicus HOM05D006694 ORTHO05D008240 9.0e-19 99.8 106 47.2
Psat3g130440 Pisum sativum HOM05D006694 ORTHO05D008240 9.0e-19 99.8 112 46.4
Nitab4.5_0000730g0020 Nicotiana tabacum HOM05D006694 ORTHO05D008240 1.2e-18 99.4 111 47.7
FAN08G0107 Fragaria x ananassa HOM05D006694 ORTHO05D008240 2.6e-18 98.2 109 43.1
Medtr7g067460 Medicago truncatula HOM05D006694 ORTHO05D008240 2.6e-18 98.2 111 43.2
FvH4_5g33200 Fragaria vesca HOM05D006694 ORTHO05D008240 3.4e-18 97.8 109 44.0
Ca_07624_v3 Cicer arietinum L. HOM05D000278 ORTHO05D008240 4.5e-18 97.4 112 45.5
FAN18G4320 Fragaria x ananassa HOM05D006694 ORTHO05D008240 4.5e-18 97.4 109 43.1
Nitab4.5_0001500g0030 Nicotiana tabacum HOM05D006694 ORTHO05D008240 4.5e-18 97.4 111 45.0
Nitab4.5_0003488g0040 Nicotiana tabacum HOM05D006694 ORTHO05D008240 4.5e-18 97.4 111 43.2
Cfa011326 Carpinus fangiana HOM05D006694 ORTHO05D008240 7.6e-18 96.7 112 43.8
Lj1g0001110 Lotus japonicus HOM05D006694 ORTHO05D010126 9.9e-18 96.3 113 46.9
Solyc07g064625.1 Solanum lycopersicum HOM05D006694 ORTHO05D008240 9.9e-18 96.3 127 40.2
PGSC0003DMG400022317 Solanum tuberosum HOM05D006694 ORTHO05D008240 9.9e-18 96.3 127 40.2
VMungo1383G3557 Vigna mungo HOM05D006694 ORTHO05D008240 9.9e-18 96.3 103 46.6
Ca_20213_v3 Cicer arietinum L. HOM05D006694 ORTHO05D008240 1.3e-17 95.9 112 43.8
TAR633G1767 Trochodendron aralioides HOM05D006694 ORTHO05D008240 1.3e-17 95.9 112 42.9
Aqoxy1G00470 Aquilegia oxysepala HOM05D006694 ORTHO05D008240 2.9e-17 94.7 112 41.1
Sopen07g032820 Solanum pennellii HOM05D006694 ORTHO05D008240 2.9e-17 94.7 127 39.4
TWI79G1258 Tripterygium wilfordii HOM05D006694 ORTHO05D008240 3.8e-17 94.4 112 39.3
SalBow5G3658 Salvia bowleyana HOM05D006694 ORTHO05D008240 4.9e-17 94.0 112 40.2
SalBow5G5172 Salvia bowleyana HOM05D006694 ORTHO05D008240 4.9e-17 94.0 112 40.2
CAN.G337.135 Capsicum annuum HOM05D006694 ORTHO05D008240 6.4e-17 93.6 126 39.7
PGR031G0070 Punica granatum HOM05D006694 ORTHO05D008240 6.4e-17 93.6 110 42.7
FAN25G2919 Fragaria x ananassa HOM05D006694 ORTHO05D008240 8.4e-17 93.2 101 44.6
THA.LOC104800448 Tarenaya hassleriana HOM05D006694 ORTHO05D008240 8.4e-17 93.2 105 44.8
FvH4_3g35120 Fragaria vesca HOM05D006694 ORTHO05D008240 1.1e-16 92.8 101 44.6
FAN11G2736 Fragaria x ananassa HOM05D006694 ORTHO05D008240 1.1e-16 92.8 101 44.6
RcHm_v2.0_Chr5g0048941 Rosa chinensis HOM05D006694 ORTHO05D008240 1.1e-16 92.8 101 44.6
FAN21G3540 Fragaria x ananassa HOM05D006694 ORTHO05D008240 1.4e-16 92.4 109 41.3
Nn7g35871 Nelumbo nucifera HOM05D006694 ORTHO05D008240 1.4e-16 92.4 112 39.3
Phvul.008G105900 Phaseolus vulgaris HOM05D006694 ORTHO05D008240 1.9e-16 92.0 112 42.9
TPR.G8137 Trifolium pratense HOM05D006694 ORTHO05D008240 2.5e-16 91.7 129 38.0
SalBow6G6606 Salvia bowleyana HOM05D006694 ORTHO05D008240 4.2e-16 90.9 112 39.3
SalBow6G6418 Salvia bowleyana HOM05D006694 ORTHO05D008240 7.1e-16 90.1 112 39.3
HanXRQChr14g0447481 Helianthus annuus HOM05D006694 ORTHO05D008240 9.3e-16 89.7 110 42.7
Glyma.07G147400 Glycine max HOM05D006694 ORTHO05D008240 1.6e-15 89.0 102 43.1
Lalb_Chr10g0096081 Lupinus albus HOM05D006694 ORTHO05D008240 6.0e-15 87.0 111 41.4
MELO3C015109.2 Cucumis melo HOM05D006694 ORTHO05D008240 1.0e-14 86.3 131 37.4
Aa31LG2G18100 Aethionema arabicum HOM05D006694 ORTHO05D008240 2.3e-14 85.1 102 46.1
ClCG03G012530 Citrullus lanatus HOM05D006694 ORTHO05D008240 2.3e-14 85.1 131 39.7
Prupe.1G547200 Prunus persica HOM05D006694 ORTHO05D008240 2.3e-14 85.1 82 46.3
SGA_v2.0_scaffold29G12231 Striga asiatica HOM05D006694 ORTHO05D008240 2.3e-14 85.1 110 40.0
Nitab4.5_0000718g0300 Nicotiana tabacum HOM05D006694 ORTHO05D008240 3.0e-14 84.7 86 44.2
ATR0737G153 Amborella trichopoda HOM05D006694 ORTHO05D008240 5.1e-14 84.0 105 41.9
CsaV3_1G043500 Cucumis sativus L. HOM05D006694 ORTHO05D008240 6.7e-14 83.6 131 37.4
Sed0016136 Sechium edule HOM05D006694 ORTHO05D008240 8.7e-14 83.2 131 36.6
Aa31sc233G30 Aethionema arabicum HOM05D006694 ORTHO05D008240 1.1e-13 82.8 102 43.1
Aa31LG10G10300 Aethionema arabicum HOM05D006694 ORTHO05D008240 1.5e-13 82.4 105 42.9
Aa31sc233G40 Aethionema arabicum HOM05D006694 ORTHO05D008240 1.9e-13 82.0 102 43.1
Aa31sc233G60 Aethionema arabicum HOM05D006694 ORTHO05D008240 1.9e-13 82.0 102 43.1
Aa31LG5G8930 Aethionema arabicum HOM05D006694 ORTHO05D008240 7.4e-13 80.1 105 41.9
BolC5t29875H Brassica oleracea HOM05D006694 ORTHO05D008240 7.4e-13 80.1 106 42.5
C05p11260 Brassica napus HOM05D006694 ORTHO05D008240 9.6e-13 79.7 106 42.5
MBI04_g37009_MAGBIO Magnolia biondii HOM05D006694 ORTHO05D008240 1.3e-12 79.3 84 41.7
Aa31LG2G18070 Aethionema arabicum HOM05D006694 ORTHO05D008240 1.6e-12 79.0 99 43.4
Aa31LG2G18090 Aethionema arabicum HOM05D006694 ORTHO05D008240 1.6e-12 79.0 99 43.4
Aa31LG5G9000 Aethionema arabicum HOM05D006694 ORTHO05D008240 1.6e-12 79.0 99 43.4
Thhalv10006947m.g Eutrema salsugineum HOM05D006694 ORTHO05D008240 2.1e-12 78.6 106 40.6
Aa31sc233G50 Aethionema arabicum HOM05D006694 ORTHO05D008240 1.4e-11 75.9 104 40.4
BraA06t24145Z Brassica rapa HOM05D006694 ORTHO05D008240 2.4e-11 75.1 106 39.6
Aa31LG6G11680 Aethionema arabicum HOM05D006694 ORTHO05D008240 4.0e-11 74.3 105 38.1
Aa31LG6G5340 Aethionema arabicum HOM05D006694 ORTHO05D008240 4.0e-11 74.3 105 38.1
Aa31LG8G12540 Aethionema arabicum HOM05D006694 ORTHO05D008240 6.9e-11 73.6 143 32.9
DCAR_024407 Daucus carota HOM05D006694 ORTHO05D008240 6.9e-11 73.6 89 39.3
MD15G1400000 Malus domestica HOM05D006694 ORTHO05D008240 9.0e-11 73.2 82 39.0
ECA238G0309 Erigeron canadensis HOM05D006295 ORTHO05D008061 1.2e-10 72.8 82 45.1
Eucgr.G03208 Eucalyptus grandis HOM05D006694 ORTHO05D008240 1.5e-10 72.4 82 42.7
Aa31LG6G11690 Aethionema arabicum HOM05D006694 ORTHO05D008240 2.6e-10 71.6 105 36.2
Aa31LG6G5330 Aethionema arabicum HOM05D006694 ORTHO05D008240 2.6e-10 71.6 105 36.2
A06p09550 Brassica napus HOM05D006694 ORTHO05D008240 2.6e-10 71.6 106 37.7
MD15G1399800 Malus domestica HOM05D006694 ORTHO05D008240 1.3e-09 69.3 89 39.3
Sp1g10540 Schrenkiella parvula HOM05D006694 ORTHO05D008240 1.7e-09 68.9 89 43.8
ATR0737G136 Amborella trichopoda HOM05D006694 ORTHO05D008240 2.2e-09 68.6 102 35.3
ATR0681G086 Amborella trichopoda HOM05D006694 ORTHO05D008240 1.1e-08 66.2 111 33.3
ATR1128G092 Amborella trichopoda HOM05D006694 ORTHO05D008240 1.1e-08 66.2 113 34.5
CARHR235710 Cardamine hirsuta HOM05D006694 ORTHO05D008240 1.9e-08 65.5 81 44.4
Cfa009864 Carpinus fangiana HOM05D006694 ORTHO05D008240 1.9e-08 65.5 104 33.7
AL7G24620 Arabidopsis lyrata HOM05D006694 ORTHO05D008240 4.2e-08 64.3 84 44.0
Ciclev10014456m.g Citrus clementina HOM05D006694 ORTHO05D008240 6.0e-07 60.5 89 34.8
Rhsim13G0208900 Rhododendron simsii HOM05D006694 ORTHO05D008240 6.0e-07 60.5 73 45.2
ATR0697G204 Amborella trichopoda HOM05D006694 ORTHO05D008240 7.9e-07 60.1 85 40.0
HPP92_025503 Vanilla planifolia HOM05D062792 ORTHO05D008240 2.3e-06 58.5 99 30.3
HPP92_025533 Vanilla planifolia HOM05D062792 ORTHO05D008240 2.3e-06 58.5 99 30.3
Aa31LG5G21690 Aethionema arabicum HOM05D006694 ORTHO05D008240 3.0e-06 58.2 106 34.0


User provided reference genes

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