Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g194530 Amaranthus hybridus HOM05D007144 ORTHO05D008709 2.0e-53 212.2 111 100.0
EL10Ac4g10148 Beta vulgaris HOM05D007144 ORTHO05D008709 3.0e-25 118.6 72 83.3
Hund07439 Selenicereus undatus HOM05D007144 ORTHO05D008709 9.6e-24 113.6 73 80.8
AUR62006537 Chenopodium quinoa HOM05D007144 ORTHO05D008709 4.8e-23 111.3 71 81.7
Sc06g0004670 Simmondsia chinensis HOM05D007144 ORTHO05D008709 2.9e-20 102.1 99 60.6
COL.COLO4_35678 Corchorus olitorius HOM05D007144 ORTHO05D008709 2.1e-18 95.9 76 71.1
AUR62000186 Chenopodium quinoa HOM05D007144 ORTHO05D008709 2.7e-18 95.5 71 74.6
Nitab4.5_0003882g0010 Nicotiana tabacum HOM05D007144 ORTHO05D008709 2.7e-18 95.5 72 70.8
Thecc.09G249300 Theobroma cacao HOM05D007144 ORTHO05D008709 3.5e-18 95.1 72 75.0
Solyc04g008580.3 Solanum lycopersicum HOM05D007144 ORTHO05D008709 3.0e-17 92.0 72 69.4
Nitab4.5_0000129g0400 Nicotiana tabacum HOM05D007144 ORTHO05D008709 3.9e-17 91.7 72 69.4
Sopen04g003740 Solanum pennellii HOM05D007144 ORTHO05D008709 8.7e-17 90.5 72 68.1
PGSC0003DMG400031376 Solanum tuberosum HOM05D007144 ORTHO05D008709 8.7e-17 90.5 72 68.1
CAN.G880.2 Capsicum annuum HOM05D007144 ORTHO05D008709 1.1e-16 90.1 72 68.1
Cc11_g02820 Coffea canephora HOM05D007144 ORTHO05D008709 1.1e-16 90.1 87 59.8
Peaxi162Scf00329g00929 Petunia axillaris HOM05D007144 ORTHO05D008709 1.1e-16 90.1 72 68.1
MD03G1167000 Malus domestica HOM05D007144 ORTHO05D008709 1.5e-16 89.7 59 78.0
Atru.chr3.2764 Acer truncatum HOM05D007144 ORTHO05D008709 7.4e-16 87.4 71 66.2
CiPaw.13G151300 Carya illinoinensis HOM05D007144 ORTHO05D008709 1.3e-15 86.7 74 67.6
Duzib150G1568 Durio zibethinus HOM05D007144 ORTHO05D008709 1.3e-15 86.7 68 72.1
CSS0000717 Camellia sinensis var. sinensis HOM05D007144 ORTHO05D008709 1.6e-15 86.3 64 71.9
MD11G1186200 Malus domestica HOM05D007144 ORTHO05D008709 1.6e-15 86.3 54 79.6
THA.LOC104799122 Tarenaya hassleriana HOM05D007144 ORTHO05D008709 1.6e-15 86.3 77 61.0
TAR369G0480 Trochodendron aralioides HOM05D007144 ORTHO05D008709 1.6e-15 86.3 73 69.9
CARHR200790 Cardamine hirsuta HOM05D007144 ORTHO05D008709 3.7e-15 85.1 59 74.6
Thhalv10014957m.g Eutrema salsugineum HOM05D007144 ORTHO05D008709 3.7e-15 85.1 71 70.4
Hma1.2p1_0842F.1_g227150 Hydrangea macrophylla HOM05D007144 ORTHO05D008709 3.7e-15 85.1 53 77.4
SalBow5G2023 Salvia bowleyana HOM05D007144 ORTHO05D008709 6.3e-15 84.3 79 60.8
AL6G23120 Arabidopsis lyrata HOM05D007144 ORTHO05D008709 8.2e-15 84.0 71 67.6
Ciclev10017489m.g Citrus clementina HOM05D007144 ORTHO05D008709 8.2e-15 84.0 57 71.9
MBI13_g27793_MAGBIO Magnolia biondii HOM05D007144 ORTHO05D008709 8.2e-15 84.0 71 66.2
Prupe.4G267400 Prunus persica HOM05D007144 ORTHO05D008709 8.2e-15 84.0 71 63.4
Aqoxy1G00362 Aquilegia oxysepala HOM05D007144 ORTHO05D008709 1.1e-14 83.6 53 79.2
SalBow5G2895 Salvia bowleyana HOM05D007144 ORTHO05D008709 1.1e-14 83.6 96 53.1
Sp6g31320 Schrenkiella parvula HOM05D007144 ORTHO05D008709 1.4e-14 83.2 70 70.0
HPP92_013978 Vanilla planifolia HOM05D007144 ORTHO05D008709 1.4e-14 83.2 77 58.4
Duzib168G0692 Durio zibethinus HOM05D007144 ORTHO05D008709 1.8e-14 82.8 78 65.4
Gohir.D07G124200 Gossypium hirsutum HOM05D007144 ORTHO05D008709 1.8e-14 82.8 72 68.1
Gorai.001G134000 Gossypium raimondii HOM05D007144 ORTHO05D008709 1.8e-14 82.8 72 68.1
A10p25500 Brassica napus HOM05D007144 ORTHO05D008709 2.4e-14 82.4 73 65.8
C09p64580 Brassica napus HOM05D007144 ORTHO05D008709 2.4e-14 82.4 73 65.8
BolC9t59291H Brassica oleracea HOM05D007144 ORTHO05D008709 2.4e-14 82.4 73 65.8
BraA10t44614Z Brassica rapa HOM05D007144 ORTHO05D008709 2.4e-14 82.4 73 65.8
FvH4_1g25870 Fragaria vesca HOM05D007144 ORTHO05D008709 2.4e-14 82.4 69 63.8
FAN23G1846 Fragaria x ananassa HOM05D007144 ORTHO05D008709 2.4e-14 82.4 69 63.8
arahy.Tifrunner.gnm1.ann1.A9WCXI Arachis hypogaea HOM05D007144 ORTHO05D008709 3.1e-14 82.0 74 64.9
Carub.0006s1083 Capsella rubella HOM05D007144 ORTHO05D008709 3.1e-14 82.0 60 68.3
Potri.009G070700 Populus trichocarpa HOM05D007144 ORTHO05D008709 4.1e-14 81.6 69 66.7
RcHm_v2.0_Chr3g0485011 Rosa chinensis HOM05D007144 ORTHO05D008709 4.1e-14 81.6 69 63.8
FAN26G3363 Fragaria x ananassa HOM05D007144 ORTHO05D008709 5.3e-14 81.3 69 62.3
FAN19G1536 Fragaria x ananassa HOM05D007144 ORTHO05D008709 6.9e-14 80.9 69 62.3
SGA_v2.0_scaffold43G16444 Striga asiatica HOM05D007144 ORTHO05D008709 1.2e-13 80.1 71 59.2
AT5G12320 Arabidopsis thaliana HOM05D007144 ORTHO05D008709 1.5e-13 79.7 71 63.4
Cfa010657 Carpinus fangiana HOM05D007144 ORTHO05D008709 1.5e-13 79.7 64 71.9
Dinv36172 Davidia involucrata HOM05D007144 ORTHO05D008709 1.5e-13 79.7 87 56.3
Gohir.A07G120000 Gossypium hirsutum HOM05D007144 ORTHO05D008709 1.5e-13 79.7 64 71.9
Potri.001G276100 Populus trichocarpa HOM05D007144 ORTHO05D008709 1.5e-13 79.7 71 66.2
ECA236G5047 Erigeron canadensis HOM05D007144 ORTHO05D008709 2.0e-13 79.3 78 59.0
Manes.02G140201 Manihot esculenta HOM05D007144 ORTHO05D008709 2.0e-13 79.3 66 68.2
Actinidia06960 Actinidia chinensis HOM05D007144 ORTHO05D008709 2.6e-13 79.0 52 75.0
Haze_23224 Corylus avellana HOM05D007144 ORTHO05D008709 2.6e-13 79.0 64 70.3
Zm00001eb329760 Zea mays HOM05D007144 ORTHO05D008709 2.6e-13 79.0 60 65.0
arahy.Tifrunner.gnm1.ann1.FNNB0Q Arachis hypogaea HOM05D007144 ORTHO05D008709 3.4e-13 78.6 68 67.6
arahy.Tifrunner.gnm1.ann1.J3HRR4 Arachis hypogaea HOM05D007144 ORTHO05D008709 3.4e-13 78.6 68 67.6
Cpa.g.sc482.3 Carica papaya HOM05D007144 ORTHO05D008709 4.5e-13 78.2 64 70.3
Medtr3g088410 Medicago truncatula HOM05D007144 ORTHO05D008709 4.5e-13 78.2 71 60.6
Glyma.08G150200 Glycine max HOM05D007144 ORTHO05D008709 5.9e-13 77.8 47 78.7
CDE04G3392 Ceratophyllum demersum HOM05D000144 ORTHO05D007336 7.6e-13 77.4 72 59.7
Haze_03594 Corylus avellana HOM05D007144 ORTHO05D008709 7.6e-13 77.4 64 68.8
ATR0745G069 Amborella trichopoda HOM05D007144 ORTHO05D008709 1.3e-12 76.6 60 65.0
HanXRQChr17g0535301 Helianthus annuus HOM05D007144 ORTHO05D008709 1.7e-12 76.3 54 70.4
Ca_03986_v3 Cicer arietinum L. HOM05D007144 ORTHO05D008709 2.9e-12 75.5 47 78.7
Migut.O00557 Erythranthe guttata HOM05D007144 ORTHO05D008709 2.9e-12 75.5 75 53.3
Aa31LG3G14910 Aethionema arabicum HOM05D007144 ORTHO05D008709 3.8e-12 75.1 47 80.9
DCAR_023846 Daucus carota HOM05D007144 ORTHO05D008709 5.0e-12 74.7 54 66.7
Sabra09G0053500 Salix brachista HOM05D007144 ORTHO05D008709 5.0e-12 74.7 53 71.7
Lsat_1_v5_gn_2_34061 Lactuca sativa HOM05D007144 ORTHO05D008709 6.5e-12 74.3 68 61.8
Lj6g0012120 Lotus japonicus HOM05D007144 ORTHO05D008709 8.5e-12 73.9 47 80.9
Sed0028076 Sechium edule HOM05D007144 ORTHO05D008709 1.4e-11 73.2 51 70.6
TPR.G13466 Trifolium pratense HOM05D007144 ORTHO05D008709 1.9e-11 72.8 52 71.2
Ca_12164_v3 Cicer arietinum L. HOM05D007144 ORTHO05D008709 2.5e-11 72.4 50 76.0
TAR623G0360 Trochodendron aralioides HOM05D007144 ORTHO05D008709 4.2e-11 71.6 47 78.7
Atru.chr4.1901 Acer truncatum HOM05D007144 ORTHO05D008709 7.2e-11 70.9 77 54.5
Manes.01G179700 Manihot esculenta HOM05D007144 ORTHO05D008709 7.2e-11 70.9 64 65.6
CsaV3_6G039020 Cucumis sativus L. HOM05D007144 ORTHO05D008709 1.2e-10 70.1 64 59.4
Rhsim13G0210700 Rhododendron simsii HOM05D007144 ORTHO05D008709 2.1e-10 69.3 61 62.3
GSVIVG01037268001 Vitis vinifera HOM05D007144 ORTHO05D008709 6.1e-10 67.8 56 69.6
MELO3C014563.2 Cucumis melo HOM05D007144 ORTHO05D008709 1.0e-09 67.0 68 58.8
Phvul.006G021300 Phaseolus vulgaris HOM05D007144 ORTHO05D008709 1.8e-09 66.2 41 75.6
unitig_749.g14354 Utricularia gibba HOM05D007144 ORTHO05D008709 1.8e-09 66.2 54 55.6
Eucgr.B03730 Eucalyptus grandis HOM05D007144 ORTHO05D008709 6.7e-09 64.3 62 54.8
CANSAT54G2482 Cannabis sativa HOM05D007144 ORTHO05D008709 1.5e-08 63.2 60 61.7
Mapoly0026s0092 Marchantia polymorpha HOM05D007144 ORTHO05D008709 3.3e-08 62.0 52 55.8
Psat1g051560 Pisum sativum HOM05D007144 ORTHO05D008709 3.3e-08 62.0 43 74.4
TWI23G1223 Tripterygium wilfordii HOM05D007144 ORTHO05D008709 1.3e-07 60.1 59 59.3
Lalb_Chr18g0054451 Lupinus albus HOM05D007144 ORTHO05D008709 6.3e-07 57.8 57 59.6
QL01p017309 Quercus lobata HOM05D007144 ORTHO05D008709 6.3e-07 57.8 55 65.5
Nn7g36693 Nelumbo nucifera HOM05D007144 ORTHO05D008709 8.2e-07 57.4 56 60.7
PGR102G1924 Punica granatum HOM05D007144 ORTHO05D008709 1.8e-06 56.2 42 66.7


User provided reference genes

Program Settings