Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g193930 Amaranthus hybridus HOM05D004797 ORTHO05D005752 3.1e-233 811.6 460 100.0
AUR62019327 Chenopodium quinoa HOM05D004797 ORTHO05D005752 7.7e-176 620.9 475 76.6
AUR62000146 Chenopodium quinoa HOM05D004797 ORTHO05D005752 4.0e-172 608.6 478 67.6
EL10Ac4g10215 Beta vulgaris HOM05D004797 ORTHO05D005752 4.8e-170 601.7 482 76.6
Hund07473 Selenicereus undatus HOM05D004797 ORTHO05D005752 1.4e-145 520.4 487 63.2
Gohir.A09G112900 Gossypium hirsutum HOM05D004797 ORTHO05D005752 8.9e-140 501.1 259 86.9
Manes.14G004000 Manihot esculenta HOM05D004797 ORTHO05D005752 2.6e-139 499.6 260 86.9
Hund22004 Selenicereus undatus HOM05D004797 ORTHO05D005752 4.9e-138 495.4 459 59.7
Peaxi162Scf00004g00318 Petunia axillaris HOM05D004797 ORTHO05D005752 1.1e-137 494.2 261 84.7
Thecc.09G237700 Theobroma cacao HOM05D004797 ORTHO05D005752 1.1e-137 494.2 263 84.8
Potri.009G051400 Populus trichocarpa HOM05D004797 ORTHO05D005752 1.4e-137 493.8 260 86.2
Gohir.D09G109400 Gossypium hirsutum HOM05D004797 ORTHO05D005752 2.4e-137 493.0 259 85.7
Gorai.006G127000 Gossypium raimondii HOM05D004797 ORTHO05D005752 2.4e-137 493.0 259 85.7
Cpa.g.sc84.33 Carica papaya HOM05D004797 ORTHO05D005752 3.2e-137 492.7 261 83.9
Duzib170G0427 Durio zibethinus HOM05D004797 ORTHO05D005752 4.1e-137 492.3 263 83.7
Nn7g36315 Nelumbo nucifera HOM05D004797 ORTHO05D005752 4.1e-137 492.3 259 87.6
Potri.001G256000 Populus trichocarpa HOM05D004797 ORTHO05D005752 4.1e-137 492.3 260 85.0
Ciclev10014796m.g Citrus clementina HOM05D004797 ORTHO05D005752 9.2e-137 491.1 259 85.3
Prupe.4G254200 Prunus persica HOM05D004797 ORTHO05D005752 1.0e-135 487.6 260 83.5
MD03G1172400 Malus domestica HOM05D004797 ORTHO05D005752 1.7e-135 486.9 259 83.4
ClCG03G013100 Citrullus lanatus HOM05D004797 ORTHO05D005752 2.3e-135 486.5 257 84.8
Dinv36236 Davidia involucrata HOM05D004797 ORTHO05D005752 2.3e-135 486.5 255 84.7
arahy.Tifrunner.gnm1.ann1.BIMS8G Arachis hypogaea HOM05D004797 ORTHO05D005752 3.9e-135 485.7 259 85.7
Solyc11g065370.3 Solanum lycopersicum HOM05D004797 ORTHO05D005752 5.0e-135 485.3 261 83.9
CiPaw.14G117300 Carya illinoinensis HOM05D004797 ORTHO05D005752 8.6e-135 484.6 260 83.5
arahy.Tifrunner.gnm1.ann1.IKU8UZ Arachis hypogaea HOM05D004797 ORTHO05D005752 1.1e-134 484.2 259 85.3
Nn2g15211 Nelumbo nucifera HOM05D004797 ORTHO05D005752 1.1e-134 484.2 260 85.8
Rhsim01G0192400 Rhododendron simsii HOM05D004797 ORTHO05D005752 1.1e-134 484.2 257 83.7
CAN.G717.4 Capsicum annuum HOM05D004797 ORTHO05D005752 1.9e-134 483.4 257 84.0
MD11G1190300 Malus domestica HOM05D004797 ORTHO05D005752 1.9e-134 483.4 260 82.7
CsaV3_1G042960 Cucumis sativus L. HOM05D004797 ORTHO05D005752 2.5e-134 483.0 257 84.0
Nitab4.5_0002451g0050 Nicotiana tabacum HOM05D004797 ORTHO05D005752 2.5e-134 483.0 258 83.3
Atru.chr3.2667 Acer truncatum HOM05D004797 ORTHO05D005752 5.6e-134 481.9 262 82.1
DCAR_029965 Daucus carota HOM05D004797 ORTHO05D005752 5.6e-134 481.9 266 82.3
GSVIVG01025234001 Vitis vinifera HOM05D004797 ORTHO05D005752 5.6e-134 481.9 259 83.8
Nitab4.5_0006617g0070 Nicotiana tabacum HOM05D004797 ORTHO05D005752 9.5e-134 481.1 258 82.6
TAR623G0783 Trochodendron aralioides HOM05D004797 ORTHO05D005752 9.5e-134 481.1 260 84.2
TAR633G1546 Trochodendron aralioides HOM05D004797 ORTHO05D005752 1.2e-133 480.7 260 84.6
VMungo1127G0838 Vigna mungo HOM05D004797 ORTHO05D005752 1.6e-133 480.3 259 84.6
Eucgr.J00747 Eucalyptus grandis HOM05D004797 ORTHO05D005752 2.1e-133 479.9 260 82.3
Actinidia16344 Actinidia chinensis HOM05D004797 ORTHO05D005752 2.8e-133 479.6 253 85.8
PGSC0003DMG400029996 Solanum tuberosum HOM05D004797 ORTHO05D005752 2.8e-133 479.6 255 84.7
Dinv22162 Davidia involucrata HOM05D004797 ORTHO05D005752 3.6e-133 479.2 255 84.7
Sopen11g025150 Solanum pennellii HOM05D004797 ORTHO05D005752 1.1e-132 477.6 255 84.3
Lalb_Chr03g0024481 Lupinus albus HOM05D004797 ORTHO05D005752 1.8e-132 476.9 261 83.5
Phvul.011G022800 Phaseolus vulgaris HOM05D004797 ORTHO05D005752 1.8e-132 476.9 259 83.4
Sabra09G0037500 Salix brachista HOM05D004797 ORTHO05D005752 1.8e-132 476.9 283 78.1
Oeu025884.1 Olea europaea HOM05D004797 ORTHO05D005752 5.2e-132 475.3 259 82.6
COL.COLO4_28767 Corchorus olitorius HOM05D004797 ORTHO05D005752 6.8e-132 474.9 260 83.1
SGA_v2.0_scaffold42G16076 Striga asiatica HOM05D004797 ORTHO05D005752 8.9e-132 474.6 266 80.1
Lalb_Chr01g0001051 Lupinus albus HOM05D004797 ORTHO05D005752 1.2e-131 474.2 259 83.0
CANSAT54G0946 Cannabis sativa HOM05D004797 ORTHO05D005752 3.4e-131 472.6 259 81.9
THA.LOC104817914 Tarenaya hassleriana HOM05D004797 ORTHO05D005752 4.4e-131 472.2 259 82.2
RcHm_v2.0_Chr5g0052831 Rosa chinensis HOM05D004797 ORTHO05D005752 1.3e-130 470.7 257 81.7
Actinidia11672 Actinidia chinensis HOM05D004797 ORTHO05D005752 1.7e-130 470.3 257 82.9
Medtr4g076980 Medicago truncatula HOM05D004797 ORTHO05D005752 4.9e-130 468.8 259 82.6
MELO3C015173.2 Cucumis melo HOM05D004797 ORTHO05D005752 8.3e-130 468.0 461 61.6
Lsat_1_v5_gn_1_77340 Lactuca sativa HOM05D004797 ORTHO05D005752 2.4e-129 466.5 259 81.5
Glyma.12G020200 Glycine max HOM05D004797 ORTHO05D005752 4.1e-129 465.7 259 82.6
TPR.G13744 Trifolium pratense HOM05D004797 ORTHO05D005752 5.4e-129 465.3 259 81.9
vmacro14270 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 9.2e-129 464.5 256 79.7
Hma1.2p1_2280F.1_g318720 Hydrangea macrophylla HOM05D004797 ORTHO05D005752 1.6e-128 463.8 256 82.4
Carub.0001s4032 Capsella rubella HOM05D004797 ORTHO05D005752 2.1e-128 463.4 259 79.5
FAN11G3886 Fragaria x ananassa HOM05D004797 ORTHO05D005752 3.5e-128 462.6 257 80.9
MSTRG.12462 Avicennia marina HOM05D004797 ORTHO05D005752 7.8e-128 461.5 260 79.6
FAN16G3639 Fragaria x ananassa HOM05D004797 ORTHO05D005752 7.8e-128 461.5 257 80.5
FAN21G1390 Fragaria x ananassa HOM05D004797 ORTHO05D005752 7.8e-128 461.5 257 80.5
Glyma.11G093700 Glycine max HOM05D004797 ORTHO05D005752 1.0e-127 461.1 259 81.9
BcaB07g33593 Brassica carinata HOM05D004797 ORTHO05D005752 2.3e-127 459.9 259 79.5
Thhalv10011431m.g Eutrema salsugineum HOM05D004797 ORTHO05D005752 8.6e-127 458.0 259 79.9
Aa31LG10G3600 Aethionema arabicum HOM05D004797 ORTHO05D005752 1.5e-126 457.2 259 79.2
Aqoxy2G00222 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 2.5e-126 456.4 259 80.7
Lj3g0024081 Lotus japonicus HOM05D004797 ORTHO05D005752 2.5e-126 456.4 263 79.8
Sed0009811 Sechium edule HOM05D004797 ORTHO05D005752 3.3e-126 456.1 252 79.8
SalBow8G4383 Salvia bowleyana HOM05D004797 ORTHO05D005752 7.3e-126 454.9 254 79.9
TWI32G1158 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 9.5e-126 454.5 469 53.5
MBI19_g09239_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 1.2e-125 454.1 266 76.7
Sp1g38120 Schrenkiella parvula HOM05D004797 ORTHO05D005752 1.6e-125 453.8 259 78.4
HanXRQChr01g0023561 Helianthus annuus HOM05D004797 ORTHO05D005752 2.1e-125 453.4 255 80.0
TWI60G0872 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 2.1e-125 453.4 473 52.2
MSTRG.18441 Avicennia marina HOM05D004797 ORTHO05D005752 2.8e-125 453.0 253 79.8
C06p06610 Brassica napus HOM05D004797 ORTHO05D005752 2.8e-125 453.0 259 78.4
Eucgr.B03708 Eucalyptus grandis HOM05D004797 ORTHO05D005752 4.7e-125 452.2 260 78.5
Cfa009790 Carpinus fangiana HOM05D004797 ORTHO05D005752 6.2e-125 451.8 237 84.8
BcaC08g43313 Brassica carinata HOM05D004797 ORTHO05D005752 1.4e-124 450.7 259 78.0
CARHR041620 Cardamine hirsuta HOM05D004797 ORTHO05D005752 3.1e-124 449.5 259 76.4
AL1G59340 Arabidopsis lyrata HOM05D004797 ORTHO05D005752 5.2e-124 448.7 259 77.2
BolC6t35774H Brassica oleracea HOM05D004797 ORTHO05D005752 8.9e-124 448.0 261 77.8
A06p02480 Brassica napus HOM05D004797 ORTHO05D005752 2.6e-123 446.4 260 78.1
Migut.D00622 Erythranthe guttata HOM05D004797 ORTHO05D005752 2.6e-123 446.4 257 78.2
BraA06t23454Z Brassica rapa HOM05D004797 ORTHO05D005752 3.4e-123 446.0 261 77.8
ECA248G3299 Erigeron canadensis HOM05D004797 ORTHO05D005752 3.4e-123 446.0 259 78.0
Lj1A320G11 Lonicera japonica HOM05D004797 ORTHO05D005752 3.4e-123 446.0 237 83.5
CSS0044227 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 9.9e-123 444.5 261 78.2
ATR0733G130 Amborella trichopoda HOM05D004797 ORTHO05D005752 1.7e-122 443.7 248 79.8
HPP92_012324 Vanilla planifolia HOM05D004797 ORTHO05D005752 2.9e-122 443.0 262 76.3
AT1G51450 Arabidopsis thaliana HOM05D004797 ORTHO05D005752 3.8e-122 442.6 259 76.1
MBI17_g23181_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 4.9e-122 442.2 251 77.3
Migut.N02340 Erythranthe guttata HOM05D004797 ORTHO05D005752 7.1e-121 438.3 253 77.1
Aqoxy1G00230 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 2.1e-120 436.8 260 76.9
PSO384G3237 Papaver somniferum HOM05D004797 ORTHO05D005752 1.0e-119 434.5 263 79.1
vmacro04134 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 1.7e-119 433.7 422 64.5
PGR142G0717 Punica granatum HOM05D004797 ORTHO05D005752 3.9e-119 432.6 265 76.2
PSO339G1463 Papaver somniferum HOM05D004797 ORTHO05D005752 7.3e-118 428.3 256 79.3
PSO339G4480 Papaver somniferum HOM05D004797 ORTHO05D005752 1.7e-114 417.2 256 76.2
Rhsim13G0218000 Rhododendron simsii HOM05D004797 ORTHO05D005752 3.8e-114 416.0 315 63.8
CSS0012701 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 2.3e-111 406.8 261 72.0
unitig_27.g24997 Utricularia gibba HOM05D004797 ORTHO05D005752 6.6e-111 405.2 298 63.1
SHI29796 Sapria himalayana HOM05D004797 ORTHO05D005752 1.1e-110 404.4 260 71.5
CiPaw.13G156600 Carya illinoinensis HOM05D004797 ORTHO05D005752 9.6e-110 401.4 259 71.4
Sc16g0011300 Simmondsia chinensis HOM05D004797 ORTHO05D005752 3.1e-108 396.4 454 52.4
PGR119G1354 Punica granatum HOM05D004797 ORTHO05D005752 7.6e-107 391.7 212 83.0
Cc01_g04890 Coffea canephora HOM05D004797 ORTHO05D005752 8.4e-106 388.3 202 82.7
CiPaw.13G157500 Carya illinoinensis HOM05D004797 ORTHO05D005752 7.9e-104 381.7 256 70.3
SEGI_00529 Sequoiadendron giganteum HOM05D004797 ORTHO05D005752 2.3e-103 380.2 268 67.2
HPP92_012392 Vanilla planifolia HOM05D004797 ORTHO05D005752 6.2e-101 372.1 217 75.6
QL01p004191 Quercus lobata HOM05D004797 ORTHO05D005752 6.7e-95 352.1 183 84.7
Os12g0143200 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 6.9e-92 342.0 265 59.6
Os11g0146500 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 1.2e-91 341.3 265 60.4
Zm00001eb092900 Zea mays HOM05D004797 ORTHO05D005752 1.7e-90 337.4 266 57.9
Ca_18973_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 8.2e-85 318.5 173 85.0
Ca_29677_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 8.2e-85 318.5 173 85.0
Actinidia23978 Actinidia chinensis HOM05D004797 ORTHO05D005752 1.1e-84 318.2 173 85.0
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 1.4e-84 317.8 253 61.7
SMO361G0750 Selaginella moellendorffii HOM05D004797 ORTHO05D005752 9.0e-84 315.1 251 60.6
Haze_23164 Corylus avellana HOM05D004797 ORTHO05D005752 1.2e-83 314.7 174 82.2
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 5.9e-83 312.4 246 60.6
Psat7g172280 Pisum sativum HOM05D004797 ORTHO05D005752 3.8e-82 309.7 173 81.5
Migut.L00817 Erythranthe guttata HOM05D004797 ORTHO05D005752 5.0e-82 309.3 176 80.1
FvH4_3g28490 Fragaria vesca HOM05D004797 ORTHO05D005752 1.1e-81 308.1 190 75.3
Migut.L00239 Erythranthe guttata HOM05D004797 ORTHO05D005752 1.2e-80 304.7 173 80.9
Pp3c12_10080 Physcomitrium patens HOM05D004797 ORTHO05D005752 4.5e-75 286.2 246 58.9
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 1.6e-72 277.7 242 57.9
unitig_60.g25644 Utricularia gibba HOM05D004797 ORTHO05D005752 6.1e-72 275.8 170 76.5
CBR_g54630 Chara braunii HOM05D004797 ORTHO05D005752 1.1e-65 255.0 226 54.9
Os11g0145700 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 7.9e-64 248.8 193 60.1
CBR_g19286 Chara braunii HOM05D004797 ORTHO05D005752 5.2e-63 246.1 254 49.2
Pp3c23_9320 Physcomitrium patens HOM05D004797 ORTHO05D005752 7.4e-62 242.3 217 56.7
CDE06G1612 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 1.1e-60 238.4 263 48.7
Sed0024369 Sechium edule HOM05D004797 ORTHO05D005752 1.4e-55 221.5 229 51.1
CDE02G2983 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 8.8e-55 218.8 180 61.1
CDE02G1762 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 2.6e-54 217.2 128 82.0
Zm00001eb380670 Zea mays HOM05D008064 ORTHO05D005752 8.2e-53 212.2 175 56.6
Cre16.g670250 Chlamydomonas reinhardtii HOM05D004797 ORTHO05D005752 4.1e-52 209.9 224 47.3
Aqoxy3G03849 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 7.2e-49 199.1 115 81.7
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 2.1e-48 197.6 111 83.8
PRCOL_00001849 Prasinoderma coloniale HOM05D004797 ORTHO05D005752 9.8e-46 188.7 249 43.0
CBR_g54627 Chara braunii HOM05D004797 ORTHO05D005752 5.4e-44 183.0 176 51.7
Zm00001eb115730 Zea mays HOM05D004797 ORTHO05D005752 2.1e-40 171.0 128 61.7
Zm00001eb287480 Zea mays HOM05D004797 ORTHO05D005752 3.6e-40 170.2 124 61.3
Psat7g172360 Pisum sativum HOM05D004797 ORTHO05D005752 2.2e-37 161.0 84 82.1
Migut.L00818 Erythranthe guttata HOM05D004797 ORTHO05D005752 3.4e-30 137.1 81 71.6
QL06p032345 Quercus lobata HOM05D004797 ORTHO05D050637 2.1e-16 91.3 49 73.5
QL93p0275_0020 Quercus lobata HOM05D004797 ORTHO05D050637 2.1e-16 91.3 49 73.5
unitig_60.g25645 Utricularia gibba HOM05D004797 ORTHO05D005752 5.2e-15 86.7 52 71.2
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 2.8e-08 64.3 166 28.3
Cfa024013 Carpinus fangiana HOM05D040201 ORTHO05D034153 8.1e-08 62.8 146 29.5


User provided reference genes

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