Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g193660 Amaranthus hybridus HOM05D004381 ORTHO05D005200 1.0e-135 486.9 278 100.0
TAR623G1292 Trochodendron aralioides HOM05D004381 ORTHO05D005200 1.7e-122 443.0 278 89.6
Hund22064 Selenicereus undatus HOM05D004381 ORTHO05D005200 2.5e-121 439.1 278 89.2
Atru.chr3.2598 Acer truncatum HOM05D004381 ORTHO05D005200 5.6e-121 438.0 278 88.5
Solyc11g062020.2 Solanum lycopersicum HOM05D004381 ORTHO05D005200 1.6e-120 436.4 278 88.1
Sopen11g023990 Solanum pennellii HOM05D004381 ORTHO05D005200 1.6e-120 436.4 278 88.1
Ciclev10016213m.g Citrus clementina HOM05D004381 ORTHO05D005200 2.1e-120 436.0 278 88.1
FvH4_3g43050 Fragaria vesca HOM05D004381 ORTHO05D005200 2.8e-120 435.6 278 87.4
FAN11G3745 Fragaria x ananassa HOM05D004381 ORTHO05D005200 2.8e-120 435.6 278 87.4
RcHm_v2.0_Chr5g0077111 Rosa chinensis HOM05D004381 ORTHO05D005200 2.8e-120 435.6 278 87.4
Migut.D00582 Erythranthe guttata HOM05D004381 ORTHO05D005200 3.6e-120 435.3 278 88.5
Potri.001G018800 Populus trichocarpa HOM05D004381 ORTHO05D005200 3.6e-120 435.3 278 87.8
FAN16G2672 Fragaria x ananassa HOM05D004381 ORTHO05D005200 8.1e-120 434.1 278 87.1
Cfa009743 Carpinus fangiana HOM05D004381 ORTHO05D005200 2.3e-119 432.6 278 86.7
Lsat_1_v5_gn_6_48200 Lactuca sativa HOM05D004381 ORTHO05D005200 2.3e-119 432.6 278 86.3
COL.COLO4_24848 Corchorus olitorius HOM05D004381 ORTHO05D005200 4.0e-119 431.8 278 85.6
FAN21G3999 Fragaria x ananassa HOM05D004381 ORTHO05D005200 4.0e-119 431.8 278 86.7
Duzib150G0594 Durio zibethinus HOM05D004381 ORTHO05D005200 5.2e-119 431.4 278 85.6
QL01p005255 Quercus lobata HOM05D004381 ORTHO05D005200 5.2e-119 431.4 277 86.6
Cc06_g22560 Coffea canephora HOM05D004381 ORTHO05D005200 6.8e-119 431.0 278 86.0
Thecc.09G228300 Theobroma cacao HOM05D004381 ORTHO05D005200 8.9e-119 430.6 278 86.0
CSS0020783 Camellia sinensis var. sinensis HOM05D004381 ORTHO05D005200 1.2e-118 430.3 278 86.7
Gohir.A08G013200 Gossypium hirsutum HOM05D004381 ORTHO05D005200 1.5e-118 429.9 278 85.6
Gorai.004G018900 Gossypium raimondii HOM05D004381 ORTHO05D005200 1.5e-118 429.9 278 85.6
MSTRG.21391 Avicennia marina HOM05D004381 ORTHO05D005200 4.4e-118 428.3 278 86.3
HanXRQChr02g0056281 Helianthus annuus HOM05D004381 ORTHO05D005200 4.4e-118 428.3 278 85.3
Prupe.6G023700 Prunus persica HOM05D004381 ORTHO05D005200 4.4e-118 428.3 278 86.0
CiPaw.14G121000 Carya illinoinensis HOM05D004381 ORTHO05D005200 7.5e-118 427.6 278 85.6
Ca_01288_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 7.5e-118 427.6 278 85.6
Gohir.D08G023600 Gossypium hirsutum HOM05D004381 ORTHO05D005200 7.5e-118 427.6 278 85.3
Rhsim13G0223600 Rhododendron simsii HOM05D004381 ORTHO05D005200 7.5e-118 427.6 278 86.0
DCAR_031567 Daucus carota HOM05D004381 ORTHO05D005200 9.9e-118 427.2 278 86.3
Aqoxy7G00799 Aquilegia oxysepala HOM05D004381 ORTHO05D005200 1.3e-117 426.8 278 85.6
Manes.06G166500 Manihot esculenta HOM05D004381 ORTHO05D005200 1.3e-117 426.8 278 85.6
Peaxi162Scf00029g02914 Petunia axillaris HOM05D004381 ORTHO05D005200 1.7e-117 426.4 278 85.6
MSTRG.18417 Avicennia marina HOM05D004381 ORTHO05D005200 3.7e-117 425.2 278 85.6
CANSAT35G1357 Cannabis sativa HOM05D004381 ORTHO05D005200 6.4e-117 424.5 278 84.9
CAN.G71.8 Capsicum annuum HOM05D004381 ORTHO05D005200 6.4e-117 424.5 283 84.1
CiPaw.13G163200 Carya illinoinensis HOM05D004381 ORTHO05D005200 8.3e-117 424.1 278 84.5
Potri.003G205100 Populus trichocarpa HOM05D004381 ORTHO05D005200 1.1e-116 423.7 278 85.3
EL10Ac4g10297 Beta vulgaris HOM05D004381 ORTHO05D005200 1.4e-116 423.3 270 90.0
ECA233G0542 Erigeron canadensis HOM05D004381 ORTHO05D005200 1.4e-116 423.3 278 84.2
Sp3g18900 Schrenkiella parvula HOM05D004381 ORTHO05D005200 1.4e-116 423.3 278 86.0
GSVIVG01025302001 Vitis vinifera HOM05D004381 ORTHO05D005200 1.4e-116 423.3 278 85.6
Eucgr.J00789 Eucalyptus grandis HOM05D004381 ORTHO05D005200 1.9e-116 422.9 278 85.6
Lalb_Chr22g0352331 Lupinus albus HOM05D004381 ORTHO05D005200 3.2e-116 422.2 278 84.2
AL3G34820 Arabidopsis lyrata HOM05D004381 ORTHO05D005200 4.1e-116 421.8 278 85.6
TPR.G6819 Trifolium pratense HOM05D004381 ORTHO05D005200 5.4e-116 421.4 278 84.2
AUR62000098 Chenopodium quinoa HOM05D004381 ORTHO05D005200 7.1e-116 421.0 274 87.2
MELO3C014607.2 Cucumis melo HOM05D004381 ORTHO05D005200 7.1e-116 421.0 278 85.6
Thhalv10021300m.g Eutrema salsugineum HOM05D004381 ORTHO05D005200 1.2e-115 420.2 278 84.9
AT3G20870 Arabidopsis thaliana HOM05D004381 ORTHO05D005200 1.6e-115 419.9 278 85.3
A05p27840 Brassica napus HOM05D004381 ORTHO05D005200 1.6e-115 419.9 275 85.8
Migut.O00580 Erythranthe guttata HOM05D004381 ORTHO05D005200 2.7e-115 419.1 277 84.1
PSO210G6888 Papaver somniferum HOM05D004381 ORTHO05D005200 4.6e-115 418.3 278 83.5
BraA05t21671Z Brassica rapa HOM05D004381 ORTHO05D005200 6.0e-115 417.9 275 85.5
Glyma.13G340900 Glycine max HOM05D004381 ORTHO05D005200 1.0e-114 417.2 278 82.7
C05p43180 Brassica napus HOM05D004381 ORTHO05D005200 1.3e-114 416.8 275 85.1
BolC5t33048H Brassica oleracea HOM05D004381 ORTHO05D005200 1.3e-114 416.8 275 85.1
Lj3g0004330 Lotus japonicus HOM05D004381 ORTHO05D005200 1.3e-114 416.8 278 83.5
Medtr2g098150 Medicago truncatula HOM05D004381 ORTHO05D005200 1.3e-114 416.8 278 83.8
Nn2g15439 Nelumbo nucifera HOM05D004381 ORTHO05D005200 1.7e-114 416.4 278 83.8
Os02g0196000 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 1.7e-114 416.4 278 83.5
Glyma.15G033500 Glycine max HOM05D004381 ORTHO05D005200 3.0e-114 415.6 278 82.7
Sed0000340 Sechium edule HOM05D004381 ORTHO05D005200 3.0e-114 415.6 278 83.5
THA.LOC104817902 Tarenaya hassleriana HOM05D004381 ORTHO05D005200 5.1e-114 414.8 278 83.1
PSO210G5188 Papaver somniferum HOM05D004381 ORTHO05D005200 1.1e-113 413.7 278 82.7
Sabra01G0013400 Salix brachista HOM05D004381 ORTHO05D005200 2.5e-113 412.5 322 75.5
Phvul.L011443 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 3.3e-113 412.1 278 81.7
MD11G1029400 Malus domestica HOM05D004381 ORTHO05D005200 5.6e-113 411.4 278 83.1
Oeu035739.1 Olea europaea HOM05D004381 ORTHO05D005200 4.7e-112 408.3 262 87.0
CARHR096750 Cardamine hirsuta HOM05D004381 ORTHO05D005200 3.1e-111 405.6 276 84.1
Nitab4.5_0000492g0060 Nicotiana tabacum HOM05D004381 ORTHO05D005200 3.1e-111 405.6 262 86.3
Nitab4.5_0002026g0030 Nicotiana tabacum HOM05D004381 ORTHO05D005200 3.1e-111 405.6 262 86.3
Aa31LG8G7690 Aethionema arabicum HOM05D004381 ORTHO05D005200 8.9e-111 404.1 281 83.6
SEGI_07837 Sequoiadendron giganteum HOM05D004381 ORTHO05D005200 8.9e-111 404.1 278 82.0
AUR62019272 Chenopodium quinoa HOM05D004381 ORTHO05D005200 1.5e-110 403.3 269 80.3
MD03G1024300 Malus domestica HOM05D004381 ORTHO05D005200 1.5e-110 403.3 278 82.7
TWI60G0262 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 2.6e-110 402.5 278 82.0
HPP92_020510 Vanilla planifolia HOM05D004381 ORTHO05D005200 4.4e-110 401.7 278 82.0
VMungo1080G0554 Vigna mungo HOM05D004381 ORTHO05D005200 5.8e-110 401.4 302 75.5
Haze_23102 Corylus avellana HOM05D004381 ORTHO05D005200 4.9e-109 398.3 278 77.3
Sabra03G0151600 Salix brachista HOM05D004381 ORTHO05D005200 8.4e-109 397.5 319 72.4
arahy.Tifrunner.gnm1.ann1.E88S00 Arachis hypogaea HOM05D004381 ORTHO05D005200 5.4e-108 394.8 321 72.9
Carub.0003s2085 Capsella rubella HOM05D004381 ORTHO05D005200 5.4e-108 394.8 278 81.7
MSTRG.21390 Avicennia marina HOM05D004381 ORTHO05D005200 1.6e-107 393.3 278 80.2
ClCG02G023360 Citrullus lanatus HOM05D004381 ORTHO05D005200 1.9e-105 386.3 256 85.5
Lalb_Chr19g0138141 Lupinus albus HOM05D004381 ORTHO05D005200 1.9e-105 386.3 279 77.8
Phvul.011G058500 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 1.6e-104 383.3 276 77.9
Actinidia16315 Actinidia chinensis HOM05D004381 ORTHO05D005200 3.6e-104 382.1 318 67.6
Psat7g213080 Pisum sativum HOM05D004381 ORTHO05D005200 4.7e-104 381.7 274 77.0
SGA_v2.0_scaffold247G44855 Striga asiatica HOM05D004381 ORTHO05D005200 4.7e-104 381.7 300 70.7
ATR0605G196 Amborella trichopoda HOM05D004381 ORTHO05D005200 6.2e-104 381.3 265 81.1
Nn7g36163 Nelumbo nucifera HOM05D004381 ORTHO05D005200 1.1e-103 380.6 278 78.4
MBI04_g13625_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 1.4e-103 380.2 279 77.1
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 5.3e-103 378.3 275 75.3
Lj3g0009499 Lotus japonicus HOM05D004381 ORTHO05D005200 3.4e-102 375.6 279 76.0
Zm00001eb205960 Zea mays HOM05D004381 ORTHO05D005200 9.9e-102 374.0 281 76.9
CDE10G0019 Ceratophyllum demersum HOM05D004381 ORTHO05D005200 1.3e-101 373.6 259 81.1
vmacro04193 Vaccinium macrocarpon HOM05D004381 ORTHO05D005200 3.2e-100 369.0 257 81.7
arahy.Tifrunner.gnm1.ann1.LPI13M Arachis hypogaea HOM05D004381 ORTHO05D005200 7.1e-100 367.9 261 80.5
MBI01_g27615_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 7.8e-99 364.4 354 60.5
Medtr4g065640 Medicago truncatula HOM05D004381 ORTHO05D005200 1.0e-98 364.0 271 76.0
VMungo1127G1882 Vigna mungo HOM05D004381 ORTHO05D005200 3.0e-98 362.5 263 77.6
arahy.Tifrunner.gnm1.ann1.T21L4I Arachis hypogaea HOM05D004381 ORTHO05D005200 6.2e-96 354.8 332 67.2
CsaV3_4G024140 Cucumis sativus L. HOM05D004381 ORTHO05D005200 1.5e-94 350.1 231 84.8
Duzib168G0673 Durio zibethinus HOM05D004381 ORTHO05D005200 2.2e-93 346.3 231 82.7
Dinv08032 Davidia involucrata HOM05D004381 ORTHO05D005200 1.8e-90 336.7 223 85.2
Sc06g0004510 Simmondsia chinensis HOM05D004381 ORTHO05D005200 1.1e-89 334.0 223 84.8
Zm00001eb213530 Zea mays HOM05D004381 ORTHO05D005200 5.6e-89 331.6 278 62.9
SMO347G0569 Selaginella moellendorffii HOM05D004381 ORTHO05D005200 7.4e-89 331.3 268 69.8
Ca_20572_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 1.8e-87 326.6 251 74.5
Ca_30507_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 1.8e-87 326.6 251 74.5
Mapoly0039s0091 Marchantia polymorpha HOM05D004381 ORTHO05D005200 1.8e-87 326.6 280 67.5
AagrBONN_evm.TU.Sc2ySwM_362.691 Anthoceros agrestis HOM05D004381 ORTHO05D005200 8.4e-85 317.8 281 66.5
Glyma.11G132500 Glycine max HOM05D004381 ORTHO05D005200 9.3e-84 314.3 275 62.2
FAN25G0848 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.0e-82 310.8 320 62.2
Lj1A348T17 Lonicera japonica HOM05D004381 ORTHO05D005200 2.3e-82 309.7 225 80.0
Pp3c16_16530 Physcomitrium patens HOM05D004381 ORTHO05D005200 1.1e-81 307.4 283 64.3
arahy.Tifrunner.gnm1.ann1.BUZ3KN Arachis hypogaea HOM05D004381 ORTHO05D005200 1.3e-80 303.9 275 66.2
arahy.Tifrunner.gnm1.ann1.N626J4 Arachis hypogaea HOM05D004381 ORTHO05D005200 1.4e-79 300.4 275 65.8
HanXRQChr17g0534131 Helianthus annuus HOM05D004381 ORTHO05D005200 1.5e-70 270.4 259 60.6
arahy.Tifrunner.gnm1.ann1.H592TP Arachis hypogaea HOM05D004381 ORTHO05D005200 3.3e-65 252.7 278 54.7
Os08g0100200 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 1.3e-64 250.8 287 51.9
Glyma.12G056900 Glycine max HOM05D004381 ORTHO05D005200 8.2e-64 248.1 188 74.5
unitig_26.g10133 Utricularia gibba HOM05D004381 ORTHO05D005200 5.1e-58 228.8 157 76.4
TPR.G39903 Trifolium pratense HOM05D004381 ORTHO05D005200 9.7e-57 224.6 182 73.1
Dinv36273 Davidia involucrata HOM05D004381 ORTHO05D005200 7.7e-54 214.9 138 81.9
Psat1g173960 Pisum sativum HOM05D004381 ORTHO05D005200 1.6e-51 207.2 146 82.9
Dinv36275 Davidia involucrata HOM05D004381 ORTHO05D005200 1.8e-50 203.8 130 82.3
Cpa.g.sc84.75 Carica papaya HOM05D004381 ORTHO05D005200 1.1e-49 201.1 132 78.0
Cre03.g189550 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 7.7e-46 188.3 300 45.0
Psat5g287120 Pisum sativum HOM05D004381 ORTHO05D005200 5.7e-41 172.2 97 89.7
TPR.G35036 Trifolium pratense HOM05D004381 ORTHO05D005200 5.7e-41 172.2 106 83.0
Oeu052046.2 Olea europaea HOM05D004381 ORTHO05D005200 3.1e-39 166.4 90 91.1
Hma1.2p1_0118F.1_g056480 Hydrangea macrophylla HOM05D004381 ORTHO05D005200 8.8e-34 148.3 84 86.9
TWI34G1572 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 1.1e-31 141.4 155 56.1
unitig_26.g10132 Utricularia gibba HOM05D004381 ORTHO05D005200 3.8e-29 132.9 80 82.5
Gohir.D11G292000 Gossypium hirsutum HOM05D004381 ORTHO05D005200 8.6e-29 131.7 74 89.2
Gorai.007G316100 Gossypium raimondii HOM05D004381 ORTHO05D005200 8.6e-29 131.7 74 89.2
Rhsim13G0223400 Rhododendron simsii HOM05D004381 ORTHO05D005200 7.2e-28 128.6 80 80.0
CBR_g19660 Chara braunii HOM05D004381 ORTHO05D005200 3.3e-20 103.2 158 46.8
MCO07G525 Micromonas commoda HOM05D004381 ORTHO05D005200 3.3e-20 103.2 265 33.6
CBR_g37790 Chara braunii HOM05D004381 ORTHO05D005200 4.7e-19 99.4 158 44.9
arahy.Tifrunner.gnm1.ann1.9W75VL Arachis hypogaea HOM05D004381 ORTHO05D005200 4.0e-18 96.3 104 56.7
arahy.Tifrunner.gnm1.ann1.XL2GL1 Arachis hypogaea HOM05D004381 ORTHO05D005200 4.0e-18 96.3 75 80.0
CBR_g35021 Chara braunii HOM05D004381 ORTHO05D005200 1.2e-17 94.7 150 39.3
arahy.Tifrunner.gnm1.ann1.0JWP28 Arachis hypogaea HOM05D004381 ORTHO05D005200 2.0e-17 94.0 75 76.0
Glyma.08G063100 Glycine max HOM05D004381 ORTHO05D005200 5.8e-17 92.4 57 78.9
CBR_g37792 Chara braunii HOM05D004381 ORTHO05D005200 9.8e-17 91.7 169 39.6
MCO07G169 Micromonas commoda HOM05D004381 ORTHO05D005200 6.4e-16 89.0 158 41.8
PRCOL_00002167 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 8.3e-16 88.6 180 34.4
Psat5g287160 Pisum sativum HOM05D004381 ORTHO05D005200 2.7e-14 83.6 71 69.0
Cre01.g066187 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 6.0e-14 82.4 155 36.1
arahy.Tifrunner.gnm1.ann1.W9WT0A Arachis hypogaea HOM05D000602 ORTHO05D011536 1.0e-13 81.6 51 72.5
MBI09_g41969_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 2.3e-13 80.5 46 87.0
arahy.Tifrunner.gnm1.ann1.T6H5I3 Arachis hypogaea HOM05D004381 ORTHO05D005200 5.0e-13 79.3 46 87.0
Cre12.g530400 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.5e-12 77.8 331 28.1
Cre12.g530350 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 2.8e-11 73.6 160 38.1
TPR.G33171 Trifolium pratense HOM05D004381 ORTHO05D005200 8.0e-11 72.0 43 81.4
PRCOL_00005627 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 4.0e-10 69.7 264 31.4
Cre09.g392060 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 3.7e-08 63.2 140 42.1
TAR636G1592 Trochodendron aralioides HOM05D004381 ORTHO05D415991 3.5e-06 56.6 60 53.3


User provided reference genes

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