Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g192860 Amaranthus hybridus HOM05D004384 ORTHO05D005797 0.0e+00 2306.6 1178 100.0
EL10Ac4g09231 Beta vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1944.9 1200 82.4
AUR62005028 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1914.0 1202 80.8
Hund07007 Selenicereus undatus HOM05D004384 ORTHO05D005797 0.0e+00 1786.2 1204 75.8
Sc06g0003540 Simmondsia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1767.3 1206 74.6
AUR62000939 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1749.2 1111 80.3
Dinv04274 Davidia involucrata HOM05D004384 ORTHO05D005797 0.0e+00 1691.0 1207 71.4
Nn3g21301 Nelumbo nucifera HOM05D004384 ORTHO05D005797 0.0e+00 1652.9 1202 69.6
GSVIVG01021908001 Vitis vinifera HOM05D004384 ORTHO05D005797 0.0e+00 1650.2 1207 70.3
Gohir.A13G171600 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1637.9 1208 69.0
Duzib177G1205 Durio zibethinus HOM05D004384 ORTHO05D005797 0.0e+00 1634.8 1215 68.6
Actinidia05750 Actinidia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1633.6 1208 69.1
Thecc.05G292400 Theobroma cacao HOM05D004384 ORTHO05D005797 0.0e+00 1632.5 1212 68.7
Manes.09G159100 Manihot esculenta HOM05D004384 ORTHO05D005797 0.0e+00 1628.6 1210 69.2
Solyc01g098170.3 Solanum lycopersicum HOM05D004384 ORTHO05D005797 0.0e+00 1619.8 1204 68.8
Rhsim10G0110700 Rhododendron simsii HOM05D004384 ORTHO05D005797 0.0e+00 1619.0 1205 68.6
Prupe.6G336100 Prunus persica HOM05D004384 ORTHO05D005797 0.0e+00 1618.2 1208 68.4
Nitab4.5_0000245g0070 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1612.0 1201 68.5
Potri.013G032100 Populus trichocarpa HOM05D004384 ORTHO05D005797 0.0e+00 1602.8 1209 68.0
Cfa006495 Carpinus fangiana HOM05D004384 ORTHO05D005797 0.0e+00 1598.9 1204 68.3
RcHm_v2.0_Chr3g0452661 Rosa chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1597.8 1203 67.7
CiPaw.07G010400 Carya illinoinensis HOM05D004384 ORTHO05D005797 0.0e+00 1595.1 1206 67.7
Gorai.013G122800 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1594.7 1210 67.1
Cpa.g.sc117.32 Carica papaya HOM05D004384 ORTHO05D005797 0.0e+00 1593.6 1197 67.4
CAN.G134.202 Capsicum annuum HOM05D004384 ORTHO05D005797 0.0e+00 1591.2 1202 67.5
QL03p001130 Quercus lobata HOM05D004384 ORTHO05D005797 0.0e+00 1586.2 1204 67.8
PGR004G0471 Punica granatum HOM05D004384 ORTHO05D005797 0.0e+00 1585.1 1208 67.1
Eucgr.H04418 Eucalyptus grandis HOM05D004384 ORTHO05D005797 0.0e+00 1580.1 1209 67.4
Peaxi162Scf00225g00421 Petunia axillaris HOM05D004384 ORTHO05D005797 0.0e+00 1578.9 1207 67.0
FvH4_6g04110 Fragaria vesca HOM05D004384 ORTHO05D005797 0.0e+00 1574.7 1198 66.7
CANSAT54G2523 Cannabis sativa HOM05D004384 ORTHO05D005797 0.0e+00 1572.8 1205 67.6
FAN14G1587 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1572.4 1198 66.6
TWI56G1253 Tripterygium wilfordii HOM05D004384 ORTHO05D005797 0.0e+00 1572.4 1210 66.7
Cc02_g32190 Coffea canephora HOM05D004384 ORTHO05D005797 0.0e+00 1571.2 1201 66.6
FAN05G3638 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1570.1 1198 66.4
FAN09G2922 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1568.1 1198 66.3
MD12G1232900 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1568.1 1209 66.4
FAN09G2428 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1566.6 1198 66.2
MD04G1216400 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1566.6 1215 66.3
Lalb_Chr04g0261021 Lupinus albus HOM05D004384 ORTHO05D005797 0.0e+00 1564.7 1209 65.8
FAN05G1088 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1564.3 1208 65.7
THA.LOC104821698 Tarenaya hassleriana HOM05D004384 ORTHO05D005797 0.0e+00 1561.6 1202 66.1
FAN02G3203 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1560.8 1198 66.1
TAR362G1140 Trochodendron aralioides HOM05D004384 ORTHO05D005797 0.0e+00 1558.1 1169 68.3
CSS0010917 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 0.0e+00 1555.8 1183 68.1
Glyma.19G240700 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1555.8 1199 65.2
Gohir.D13G109200 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1553.9 1183 66.6
Glyma.03G243400 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1553.1 1214 64.9
Gorai.013G202700 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1551.2 1211 66.1
Ciclev10000072m.g Citrus clementina HOM05D004384 ORTHO05D005797 0.0e+00 1542.3 1206 66.3
Aa31LG11G8890 Aethionema arabicum HOM05D004384 ORTHO05D005797 0.0e+00 1540.8 1199 64.7
Thhalv10003536m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1536.9 1206 64.8
Aqoxy2G03095 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1534.2 1205 64.8
Lj1g0011638 Lotus japonicus HOM05D004384 ORTHO05D005797 0.0e+00 1531.9 1202 65.5
MSTRG.20437 Avicennia marina HOM05D004384 ORTHO05D005797 0.0e+00 1523.5 1202 64.6
CARHR185780 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1517.7 1199 64.6
A06p37710 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1513.8 1199 64.4
VMungo0540G2235 Vigna mungo HOM05D004384 ORTHO05D005797 0.0e+00 1513.0 1202 62.9
BraA06t26690Z Brassica rapa HOM05D004384 ORTHO05D005797 0.0e+00 1511.5 1199 64.3
BolC7t44588H Brassica oleracea HOM05D004384 ORTHO05D005797 0.0e+00 1510.0 1200 64.3
Sabra13G0030800 Salix brachista HOM05D004384 ORTHO05D005797 0.0e+00 1510.0 1171 65.5
Sp2g20420 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1508.8 1208 64.0
Gohir.D13G177400 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1508.4 1211 64.9
C07p40520 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1507.7 1200 64.3
DCAR_022275 Daucus carota HOM05D004384 ORTHO05D005797 0.0e+00 1502.3 1206 63.5
Psat3g008440 Pisum sativum HOM05D004384 ORTHO05D005797 0.0e+00 1500.7 1199 64.2
Carub.0006s2534 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1498.0 1199 63.6
PSO170G1333 Papaver somniferum HOM05D004384 ORTHO05D005797 0.0e+00 1491.5 1197 62.7
SalBow8G4829 Salvia bowleyana HOM05D004384 ORTHO05D005797 0.0e+00 1491.1 1201 63.4
Lsat_1_v5_gn_2_64920 Lactuca sativa HOM05D004384 ORTHO05D005797 0.0e+00 1485.7 1199 64.1
CsaV3_2G004460 Cucumis sativus L. HOM05D004384 ORTHO05D005797 0.0e+00 1484.9 1203 64.3
Medtr7g114260 Medicago truncatula HOM05D004384 ORTHO05D005797 0.0e+00 1484.5 1201 64.1
TPR.G6955 Trifolium pratense HOM05D004384 ORTHO05D005797 0.0e+00 1481.1 1200 63.8
Nitab4.5_0010351g0010 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1479.9 1201 64.2
ClCG02G016280 Citrullus lanatus HOM05D004384 ORTHO05D005797 0.0e+00 1475.7 1206 63.5
AL3G15430 Arabidopsis lyrata HOM05D004384 ORTHO05D005797 0.0e+00 1464.1 1194 62.2
MELO3C004347.2 Cucumis melo HOM05D004384 ORTHO05D005797 0.0e+00 1459.9 1203 63.8
Ca_09392_v3 Cicer arietinum L. HOM05D004384 ORTHO05D005797 0.0e+00 1459.5 1167 63.9
Sed0012875 Sechium edule HOM05D004384 ORTHO05D005797 0.0e+00 1458.4 1178 63.9
arahy.Tifrunner.gnm1.ann1.KAQB8D Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1457.6 1118 66.2
ECA238G0831 Erigeron canadensis HOM05D004384 ORTHO05D005797 0.0e+00 1457.6 1195 63.0
SGA_v2.0_scaffold36G14404 Striga asiatica HOM05D004384 ORTHO05D005797 0.0e+00 1454.1 1216 62.0
Migut.B01068 Erythranthe guttata HOM05D004384 ORTHO05D005797 0.0e+00 1453.0 1204 62.0
Thhalv10022131m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1452.6 1180 63.2
HanXRQChr14g0446631 Helianthus annuus HOM05D004384 ORTHO05D005797 0.0e+00 1451.0 1201 62.8
AT3G05040 Arabidopsis thaliana HOM05D004384 ORTHO05D005797 0.0e+00 1449.5 1194 62.1
Carub.0003s0429 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1449.1 1190 62.7
CDE01G0361 Ceratophyllum demersum HOM05D004384 ORTHO05D005797 0.0e+00 1427.2 1187 61.8
COL.COLO4_13624 Corchorus olitorius HOM05D004384 ORTHO05D005797 0.0e+00 1419.1 1211 62.3
arahy.Tifrunner.gnm1.ann1.RD3H93 Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1407.1 1205 61.1
Oeu053262.1 Olea europaea HOM05D004384 ORTHO05D005797 0.0e+00 1403.7 1256 59.1
Lj7A481G46 Lonicera japonica HOM05D004384 ORTHO05D005797 0.0e+00 1338.2 981 69.3
vmacro05244 Vaccinium macrocarpon HOM05D004384 ORTHO05D005797 0.0e+00 1331.2 1280 56.9
Sp3g03870 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1327.8 1136 60.4
Phvul.006G097400 Phaseolus vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1304.7 1017 63.9
BcaNung04267 Brassica carinata HOM05D004384 ORTHO05D005797 0.0e+00 1281.2 1206 58.0
ATR0618G249 Amborella trichopoda HOM05D004384 ORTHO05D005797 0.0e+00 1268.4 1181 56.2
Os01g0363900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 0.0e+00 1267.3 1203 55.3
Zm00001eb341370 Zea mays HOM05D004384 ORTHO05D005797 0.0e+00 1265.8 1206 55.6
unitig_0.g2222 Utricularia gibba HOM05D004384 ORTHO05D005797 0.0e+00 1240.3 1217 53.9
Aqoxy179s001 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1222.6 1036 61.6
Sopen01g041740 Solanum pennellii HOM05D004384 ORTHO05D005797 0.0e+00 1092.8 805 69.6
CARHR079360 Cardamine hirsuta HOM05D004384 ORTHO05D005797 7.3e-311 1070.8 888 61.6
Haze_04294 Corylus avellana HOM05D004384 ORTHO05D005797 3.0e-301 1038.9 838 64.4
Atru.chr2.639 Acer truncatum HOM05D004384 ORTHO05D005797 5.4e-298 1028.1 963 57.3
Medtr1g063040 Medicago truncatula HOM05D004384 ORTHO05D005797 6.6e-272 941.4 1146 47.5
Pp3c11_26800 Physcomitrium patens HOM05D004384 ORTHO05D005797 1.6e-262 910.2 1225 42.6
Pp3c7_3740 Physcomitrium patens HOM05D004384 ORTHO05D005797 6.0e-257 891.7 1224 41.9
Mapoly0015s0189 Marchantia polymorpha HOM05D004384 ORTHO05D005797 9.9e-252 874.4 1248 42.0
Sopen00g006580 Solanum pennellii HOM05D004384 ORTHO05D005797 7.4e-239 831.6 630 67.8
BolC1t05723H Brassica oleracea HOM05D004384 ORTHO05D005797 1.1e-229 801.2 1188 41.3
SMO145G0253 Selaginella moellendorffii HOM05D004384 ORTHO05D005797 1.1e-221 774.6 1188 38.2
BcaB04g21343 Brassica carinata HOM05D004384 ORTHO05D005797 3.1e-221 773.1 1152 42.4
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 9.0e-221 771.5 1179 40.3
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 1.6e-217 760.8 1179 39.9
BcaC05g29989 Brassica carinata HOM05D004384 ORTHO05D005797 4.3e-215 752.7 1060 44.4
SEGI_22518 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 3.3e-207 726.5 794 50.4
AagrBONN_evm.TU.Sc2ySwM_340.422 Anthoceros agrestis HOM05D004384 ORTHO05D005797 6.1e-201 705.7 1197 36.8
Actinidia30910 Actinidia chinensis HOM05D004384 ORTHO05D005797 8.5e-187 658.7 600 59.5
HPP92_011308 Vanilla planifolia HOM05D004384 ORTHO05D005797 3.2e-186 656.8 570 58.9
HPP92_011286 Vanilla planifolia HOM05D004384 ORTHO05D005797 2.0e-172 610.9 539 57.9
HPP92_011287 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.3e-171 608.2 640 51.1
Gohir.A13G106433 Gossypium hirsutum HOM05D004384 ORTHO05D005797 6.8e-160 569.3 416 68.3
Haze_04301 Corylus avellana HOM05D004384 ORTHO05D005797 2.1e-153 547.7 490 60.8
HPP92_011309 Vanilla planifolia HOM05D004384 ORTHO05D005797 9.0e-128 462.6 489 50.9
PGSC0003DMG400022491 Solanum tuberosum HOM05D004384 ORTHO05D005797 3.4e-119 434.1 321 68.5
Sopen01g041750 Solanum pennellii HOM05D004384 ORTHO05D005797 7.4e-106 389.8 297 67.3
SEGI_23591 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 2.2e-78 298.5 269 54.6
Sopen00g006590 Solanum pennellii HOM05D004384 ORTHO05D005797 2.3e-75 288.5 210 68.6
MCO07G327 Micromonas commoda HOM05D004384 ORTHO05D005797 5.7e-74 283.9 1351 22.9
Glyma.02G183700 Glycine max HOM05D004384 ORTHO05D005797 2.8e-73 281.6 210 65.7
Lj7C481T10 Lonicera japonica HOM05D004384 ORTHO05D005797 2.7e-63 248.4 187 71.7
Os11g0518900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 7.0e-56 223.8 433 33.9
arahy.Tifrunner.gnm1.ann1.2MX35J Arachis hypogaea HOM05D000319 ORTHO05D002646 1.6e-55 222.6 215 56.3
Os11g0513900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 2.2e-49 202.2 455 30.5
CSS0044605 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 1.3e-38 166.4 108 75.0
Ciclev10003957m.g Citrus clementina HOM05D004384 ORTHO05D005797 3.0e-22 112.1 96 60.4
Cre10.g420400 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 1.2e-18 100.1 591 23.2
MBI18_g14725_MAGBIO Magnolia biondii HOM05D004384 ORTHO05D005797 2.2e-17 95.9 86 60.5
BcaC03g17773 Brassica carinata HOM05D004384 ORTHO05D005797 2.7e-15 89.0 76 57.9
Lsat_1_v5_gn_5_147500 Lactuca sativa HOM05D001610 ORTHO05D005797 1.7e-14 86.3 73 60.3
Os11g0517800 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D299849 1.9e-13 82.8 208 28.4
C02p57890 Brassica napus HOM05D004384 ORTHO05D005797 5.6e-13 81.3 63 63.5
CAN.G124.14 Capsicum annuum HOM05D004384 ORTHO05D022156 5.6e-13 81.3 50 84.0
CAN.G37.9 Capsicum annuum HOM05D001673 ORTHO05D013418 5.6e-13 81.3 50 84.0
BolC2t11857H Brassica oleracea HOM05D004384 ORTHO05D005797 2.4e-11 75.9 68 58.8
BcaNung06429 Brassica carinata HOM05D004384 ORTHO05D005797 5.3e-11 74.7 80 47.5
HPP92_011310 Vanilla planifolia HOM05D004384 ORTHO05D005797 4.9e-09 68.2 71 49.3
Thhalv10011164m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 1.9e-08 66.2 72 43.1
BraA01t04627Z Brassica rapa HOM05D004384 ORTHO05D005797 3.2e-08 65.5 69 46.4
Cre10.g420250 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 3.2e-08 65.5 194 27.3
A05p42530 Brassica napus HOM05D004384 ORTHO05D005797 5.4e-08 64.7 65 53.8
BraA05t22999Z Brassica rapa HOM05D004384 ORTHO05D005797 5.4e-08 64.7 65 53.8
FvH4_6g04501 Fragaria vesca HOM05D004384 ORTHO05D005797 1.6e-07 63.2 88 44.3
Sabra13G0031100 Salix brachista HOM05D004384 ORTHO05D037489 3.0e-06 58.9 93 43.0
Medtr7g062520 Medicago truncatula HOM05D004384 ORTHO05D005797 5.1e-06 58.2 58 51.7
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 8.7e-06 57.4 48 60.4
Sabra13G0031800 Salix brachista HOM05D004384 ORTHO05D037489 8.7e-06 57.4 108 36.1


User provided reference genes

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