Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g192270 Amaranthus hybridus HOM05D005479 ORTHO05D007756 0.0e+00 1457.2 733 100.0
EL10Ac4g09118 Beta vulgaris HOM05D005479 ORTHO05D007756 9.1e-296 1020.0 764 69.8
AUR62004929 Chenopodium quinoa HOM05D005479 ORTHO05D007756 4.2e-269 931.4 766 65.4
Sc09g0003880 Simmondsia chinensis HOM05D005479 ORTHO05D007756 4.0e-243 845.1 762 59.4
AUR62001022 Chenopodium quinoa HOM05D005479 ORTHO05D007756 7.8e-239 830.9 726 62.8
TWI74G0680 Tripterygium wilfordii HOM05D005479 ORTHO05D007756 2.3e-230 802.7 765 56.1
Manes.08G133100 Manihot esculenta HOM05D005479 ORTHO05D007756 2.1e-228 796.2 763 56.6
Thecc.05G286400 Theobroma cacao HOM05D005479 ORTHO05D007756 5.8e-226 788.1 771 56.2
CSS0032146 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 1.4e-224 783.5 760 55.4
GSVIVG01021825001 Vitis vinifera HOM05D005479 ORTHO05D007756 5.4e-224 781.6 762 55.5
CiPaw.07G065500 Carya illinoinensis HOM05D005479 ORTHO05D007756 1.7e-222 776.5 762 54.7
Gohir.D11G263500 Gossypium hirsutum HOM05D005479 ORTHO05D007756 6.6e-222 774.6 771 54.6
Gorai.007G283500 Gossypium raimondii HOM05D005479 ORTHO05D007756 1.9e-221 773.1 770 54.7
Dinv20863 Davidia involucrata HOM05D005479 ORTHO05D007756 9.6e-221 770.8 735 57.0
Actinidia05775 Actinidia chinensis HOM05D005479 ORTHO05D007756 8.1e-220 767.7 759 54.3
Cpa.g.sc117.80 Carica papaya HOM05D005479 ORTHO05D007756 2.4e-219 766.1 764 53.4
MD12G1238800 Malus domestica HOM05D005479 ORTHO05D007756 3.4e-218 762.3 762 54.1
COL.COLO4_15310 Corchorus olitorius HOM05D005479 ORTHO05D007756 7.6e-218 761.1 760 54.2
Ciclev10000348m.g Citrus clementina HOM05D005479 ORTHO05D007756 2.9e-217 759.2 761 53.7
Gohir.A11G253600 Gossypium hirsutum HOM05D005479 ORTHO05D007756 6.4e-217 758.1 770 53.9
TAR624G0950 Trochodendron aralioides HOM05D005479 ORTHO05D007756 1.1e-216 757.3 764 54.2
Cc02_g31990 Coffea canephora HOM05D005479 ORTHO05D007756 9.3e-216 754.2 765 52.0
SalBow4G0205 Salvia bowleyana HOM05D005479 ORTHO05D007756 6.0e-215 751.5 763 53.6
TPR.G7013 Trifolium pratense HOM05D005479 ORTHO05D007756 6.0e-215 751.5 755 53.1
FAN05G1441 Fragaria x ananassa HOM05D005479 ORTHO05D007756 1.3e-214 750.4 759 53.6
FAN05G3323 Fragaria x ananassa HOM05D005479 ORTHO05D007756 3.0e-214 749.2 759 53.6
SalBow4G0458 Salvia bowleyana HOM05D005479 ORTHO05D007756 3.9e-214 748.8 767 53.2
Medtr7g114940 Medicago truncatula HOM05D005479 ORTHO05D007756 5.1e-214 748.4 756 53.3
FvH4_6g03130 Fragaria vesca HOM05D005479 ORTHO05D007756 6.7e-214 748.0 762 53.3
RcHm_v2.0_Chr3g0451381 Rosa chinensis HOM05D005479 ORTHO05D007756 2.5e-213 746.1 762 53.4
Atru.chr2.800 Acer truncatum HOM05D005479 ORTHO05D007756 4.3e-213 745.3 766 53.9
QL03p025023 Quercus lobata HOM05D005479 ORTHO05D007756 4.3e-213 745.3 764 53.5
Glyma.19G243900 Glycine max HOM05D005479 ORTHO05D007756 5.6e-213 745.0 756 52.6
AL8G23370 Arabidopsis lyrata HOM05D005479 ORTHO05D007756 7.4e-213 744.6 760 52.9
CANSAT54G0735 Cannabis sativa HOM05D005479 ORTHO05D007756 7.4e-213 744.6 759 53.4
FAN14G5841 Fragaria x ananassa HOM05D005479 ORTHO05D007756 2.8e-212 742.7 762 53.0
Ca_09415_v3 Cicer arietinum L. HOM05D005479 ORTHO05D007756 1.4e-211 740.3 756 52.4
Psat3g007760 Pisum sativum HOM05D005479 ORTHO05D007756 1.8e-211 740.0 756 53.3
Lj1g0002084 Lotus japonicus HOM05D005479 ORTHO05D007756 5.3e-211 738.4 757 52.0
arahy.Tifrunner.gnm1.ann1.A0PUBP Arachis hypogaea HOM05D005479 ORTHO05D007756 6.9e-211 738.0 758 52.2
Hund22122 Selenicereus undatus HOM05D005479 ORTHO05D007756 3.4e-210 735.7 767 54.8
arahy.Tifrunner.gnm1.ann1.9C3ED3 Arachis hypogaea HOM05D005479 ORTHO05D007756 7.6e-210 734.6 758 52.0
C07p39970 Brassica napus HOM05D005479 ORTHO05D007756 7.6e-210 734.6 760 51.8
Phvul.006G100800 Phaseolus vulgaris HOM05D005479 ORTHO05D007756 9.9e-210 734.2 763 52.3
AT5G49570 Arabidopsis thaliana HOM05D005479 ORTHO05D007756 2.2e-209 733.0 762 52.0
BolC7t44530H Brassica oleracea HOM05D005479 ORTHO05D007756 2.2e-209 733.0 760 52.0
VMungo0540G0884 Vigna mungo HOM05D005479 ORTHO05D007756 2.2e-209 733.0 756 52.8
Nn7g38390 Nelumbo nucifera HOM05D005479 ORTHO05D007756 6.4e-209 731.5 758 51.7
Potri.013G039600 Populus trichocarpa HOM05D005479 ORTHO05D007756 8.4e-209 731.1 764 50.8
CAN.G134.108 Capsicum annuum HOM05D005479 ORTHO05D007756 1.4e-208 730.3 764 52.0
Eucgr.H04378 Eucalyptus grandis HOM05D005479 ORTHO05D007756 1.9e-208 729.9 768 51.7
Rhsim07G0075700 Rhododendron simsii HOM05D005479 ORTHO05D007756 7.1e-208 728.0 766 52.1
Sabra13G0037000 Salix brachista HOM05D005479 ORTHO05D007756 7.1e-208 728.0 770 51.2
HanXRQChr09g0254821 Helianthus annuus HOM05D005479 ORTHO05D007756 9.3e-208 727.6 759 51.9
Carub.0008s0944 Capsella rubella HOM05D005479 ORTHO05D007756 6.0e-207 724.9 760 52.0
THA.LOC104818635 Tarenaya hassleriana HOM05D005479 ORTHO05D007756 3.9e-206 722.2 765 51.6
CARHR287990 Cardamine hirsuta HOM05D005479 ORTHO05D007756 1.9e-205 719.9 762 51.6
Aqoxy1G01374 Aquilegia oxysepala HOM05D005479 ORTHO05D007756 4.3e-205 718.8 757 52.8
Duzib177G1118 Durio zibethinus HOM05D005479 ORTHO05D007756 1.6e-204 716.8 760 52.9
DCAR_029737 Daucus carota HOM05D005479 ORTHO05D007756 8.1e-204 714.5 762 52.4
SGA_v2.0_scaffold81G26086 Striga asiatica HOM05D005479 ORTHO05D007756 1.5e-202 710.3 823 49.2
Aa31LG11G8350 Aethionema arabicum HOM05D005479 ORTHO05D007756 2.6e-202 709.5 766 50.4
Sp2g19870 Schrenkiella parvula HOM05D005479 ORTHO05D007756 2.6e-202 709.5 759 51.4
Thhalv10003714m.g Eutrema salsugineum HOM05D005479 ORTHO05D007756 2.9e-201 706.1 765 50.5
vmacro13830 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 5.5e-200 701.8 851 48.3
Solyc01g097440.3 Solanum lycopersicum HOM05D005479 ORTHO05D007756 1.2e-199 700.7 762 50.3
Sopen01g041110 Solanum pennellii HOM05D005479 ORTHO05D007756 3.5e-199 699.1 762 49.9
Migut.N01906 Erythranthe guttata HOM05D005479 ORTHO05D007756 4.6e-199 698.7 766 49.6
Eucgr.H04377 Eucalyptus grandis HOM05D005479 ORTHO05D007756 6.0e-199 698.4 766 49.7
Lalb_Chr15g0076821 Lupinus albus HOM05D005479 ORTHO05D007756 3.3e-197 692.6 756 50.0
ECA232G3664 Erigeron canadensis HOM05D005479 ORTHO05D007756 4.1e-195 685.6 722 53.0
BraA06t26741Z Brassica rapa HOM05D005479 ORTHO05D007756 2.0e-194 683.3 739 50.2
PSO541G1403 Papaver somniferum HOM05D005479 ORTHO05D007756 7.9e-191 671.4 764 49.6
A06p38260 Brassica napus HOM05D005479 ORTHO05D007756 1.8e-190 670.2 738 49.5
PGR004G2522 Punica granatum HOM05D005479 ORTHO05D007756 8.2e-188 661.4 708 50.8
Glyma.03G246500 Glycine max HOM05D005479 ORTHO05D007756 3.2e-184 649.4 685 51.1
Lsat_1_v5_gn_4_140660 Lactuca sativa HOM05D005479 ORTHO05D007756 6.5e-177 625.2 760 47.1
Peaxi162Scf00282g00225 Petunia axillaris HOM05D005479 ORTHO05D007756 2.5e-176 623.2 741 48.4
PSO675G4284 Papaver somniferum HOM05D005479 ORTHO05D007756 3.0e-174 616.3 764 46.9
Haze_04347 Corylus avellana HOM05D005479 ORTHO05D007756 3.3e-173 612.8 689 49.9
CsaV3_2G004220 Cucumis sativus L. HOM05D005479 ORTHO05D007756 2.8e-172 609.8 609 52.5
MELO3C004372.2 Cucumis melo HOM05D005479 ORTHO05D007756 1.4e-171 607.4 608 52.1
unitig_21.g20055 Utricularia gibba HOM05D005479 ORTHO05D007756 9.1e-171 604.7 759 44.7
Sed0025675 Sechium edule HOM05D005479 ORTHO05D007756 6.7e-166 588.6 608 50.8
ATR0763G186 Amborella trichopoda HOM05D005479 ORTHO05D007756 1.4e-163 580.9 738 44.3
Lj7A489G24 Lonicera japonica HOM05D005479 ORTHO05D007756 2.4e-163 580.1 636 50.8
SEGI_17604 Sequoiadendron giganteum HOM05D005479 ORTHO05D007756 3.2e-160 569.7 775 42.7
Prupe.6G341700 Prunus persica HOM05D005479 ORTHO05D007756 2.1e-159 567.0 654 48.6
Cfa006446 Carpinus fangiana HOM05D005479 ORTHO05D007756 5.9e-146 522.3 428 61.2
Hma1.2p1_0083F.1_g042820 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 7.8e-146 521.9 425 61.4
SHI18393 Sapria himalayana HOM05D005479 ORTHO05D007756 5.0e-145 519.2 756 43.0
ClCG02G016550 Citrullus lanatus HOM05D005479 ORTHO05D007756 3.6e-143 513.1 636 45.0
Nitab4.5_0004469g0060 Nicotiana tabacum HOM05D005479 ORTHO05D007756 5.7e-141 505.8 638 46.6
TAR624G1307 Trochodendron aralioides HOM05D005479 ORTHO05D007756 1.3e-137 494.6 409 59.9
CDE11G1080 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 1.1e-134 485.0 656 42.8
Hma1.2p1_0083F.1_g042810 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 1.0e-129 468.4 454 54.0
Nitab4.5_0005582g0050 Nicotiana tabacum HOM05D005479 ORTHO05D007756 2.0e-117 427.6 501 48.9
vmacro23344 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 3.2e-115 420.2 576 45.3
Pp3c4_6120 Physcomitrium patens HOM05D005479 ORTHO05D007756 2.1e-114 417.5 774 35.4
Zm00001eb105420 Zea mays HOM05D005479 ORTHO05D007756 1.7e-113 414.5 766 35.6
Mapoly0021s0092 Marchantia polymorpha HOM05D005479 ORTHO05D007756 2.1e-111 407.5 601 41.6
Prupe.6G342000 Prunus persica HOM05D005479 ORTHO05D007756 4.9e-108 396.4 451 48.1
PGSC0003DMG400019450 Solanum tuberosum HOM05D005479 ORTHO05D007756 4.0e-102 376.7 382 51.6
Oeu040763.1 Olea europaea HOM05D005479 ORTHO05D007756 1.2e-93 348.6 344 53.8
SMO367G0213 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 3.0e-89 334.0 581 37.9
Os07g0497400 Oryza sativa ssp. japonica HOM05D005479 ORTHO05D007756 6.5e-84 316.2 462 40.9
CBR_g7957 Chara braunii HOM05D005479 ORTHO05D007756 4.2e-83 313.5 863 30.4
FAN02G1208 Fragaria x ananassa HOM05D000352 ORTHO05D000260 3.9e-73 280.4 266 56.8
SMO367G1212 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 2.5e-67 261.2 481 36.8
SMO367G0055 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 3.0e-65 254.2 540 33.9
Eucgr.H04379 Eucalyptus grandis HOM05D005479 ORTHO05D007756 1.8e-62 245.0 289 47.8
TAR624G0794 Trochodendron aralioides HOM05D005479 ORTHO05D007756 5.7e-56 223.4 182 58.2
SMO367G0934 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 2.8e-55 221.1 468 35.5
CSS0033581 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 7.0e-54 216.5 186 59.1
CSS0018477 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 9.1e-46 189.5 125 68.8
TAR624G0703 Trochodendron aralioides HOM05D005479 ORTHO05D007756 9.1e-46 189.5 144 67.4
TAR624G0835 Trochodendron aralioides HOM05D005479 ORTHO05D007756 1.1e-43 182.6 230 47.0
CSS0047105 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 1.2e-40 172.6 125 65.6
Eucgr.L03382 Eucalyptus grandis HOM05D005479 ORTHO05D007756 2.2e-31 141.7 102 65.7
CDE11G0281 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 5.4e-30 137.1 103 63.1
Cre01.g053900 Chlamydomonas reinhardtii HOM05D005479 ORTHO05D007756 1.2e-29 136.0 615 27.2
CSS0025893 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 5.2e-25 120.6 118 53.4
PRCOL_00003670 Prasinoderma coloniale HOM05D005479 ORTHO05D007756 7.5e-24 116.7 322 30.1
Cfa027061 Carpinus fangiana HOM05D005479 ORTHO05D007756 6.4e-23 113.6 289 27.7
MCO12G063 Micromonas commoda HOM05D005479 ORTHO05D007756 4.6e-21 107.5 256 30.1
Nitab4.5_0005582g0060 Nicotiana tabacum HOM05D005479 ORTHO05D019704 9.5e-19 99.8 73 64.4
CSS0023004 Camellia sinensis var. sinensis HOM05D002732 ORTHO05D002955 1.6e-18 99.0 113 46.9
VMungo1383G0330 Vigna mungo HOM05D005479 ORTHO05D019704 6.4e-15 87.0 142 38.0
FAN09G3553 Fragaria x ananassa HOM05D005479 ORTHO05D007756 3.3e-11 74.7 126 34.1
Gorai.007G282800 Gossypium raimondii HOM05D005479 ORTHO05D019704 7.3e-11 73.6 47 68.1
AL468U10010 Arabidopsis lyrata HOM05D005479 ORTHO05D019704 1.6e-10 72.4 44 65.9
Glyma.16G136532 Glycine max HOM05D005479 ORTHO05D019704 4.7e-10 70.9 79 45.6
VMungo1309G2527 Vigna mungo HOM05D002246 ORTHO05D002308 4.7e-10 70.9 101 41.6
SMO343G0028 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 6.2e-10 70.5 65 49.2
Cpa.g.sc117.79 Carica papaya HOM05D005479 ORTHO05D118266 6.8e-09 67.0 205 28.3
VMungo0464G1033 Vigna mungo HOM05D000010 ORTHO05D000063 5.8e-08 63.9 47 55.3
Cc02_g31940 Coffea canephora HOM05D005479 ORTHO05D007756 2.2e-07 62.0 60 46.7
BraA09t36127Z Brassica rapa HOM05D006288 ORTHO05D007416 1.4e-06 59.3 38 63.2
arahy.Tifrunner.gnm1.ann1.1SX7LU Arachis hypogaea HOM05D005479 ORTHO05D019704 1.9e-06 58.9 82 40.2


User provided reference genes

Program Settings