Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g192140 Amaranthus hybridus HOM05D004240 ORTHO05D005082 9.6e-83 310.1 152 100.0
Hund06956 Selenicereus undatus HOM05D004240 ORTHO05D005082 9.4e-38 160.6 124 69.4
arahy.Tifrunner.gnm1.ann1.CGL9LR Arachis hypogaea HOM05D004240 ORTHO05D005082 8.0e-37 157.5 121 66.9
arahy.Tifrunner.gnm1.ann1.LFKE78 Arachis hypogaea HOM05D004240 ORTHO05D005082 2.3e-36 156.0 119 67.2
Ah.06g187980 Amaranthus hybridus HOM05D004240 ORTHO05D005082 8.8e-36 154.1 117 68.4
AUR62004912 Chenopodium quinoa HOM05D004240 ORTHO05D005082 1.2e-35 153.7 112 69.6
Eucgr.F00376 Eucalyptus grandis HOM05D004240 ORTHO05D005082 2.6e-35 152.5 123 65.9
Cpa.g.sc79.33 Carica papaya HOM05D004240 ORTHO05D005082 3.3e-35 152.1 118 66.1
AUR62011808 Chenopodium quinoa HOM05D004240 ORTHO05D005082 4.4e-35 151.8 114 68.4
Sc20g0000280 Simmondsia chinensis HOM05D004240 ORTHO05D005082 4.4e-35 151.8 116 67.2
QL06p048114 Quercus lobata HOM05D004240 ORTHO05D005082 1.3e-34 150.2 124 62.1
Dinv08862 Davidia involucrata HOM05D004240 ORTHO05D005082 1.7e-34 149.8 120 64.2
TAR628G1673 Trochodendron aralioides HOM05D004240 ORTHO05D005082 2.2e-34 149.4 116 66.4
Phvul.009G033000 Phaseolus vulgaris HOM05D004240 ORTHO05D005082 2.8e-34 149.1 116 63.8
arahy.Tifrunner.gnm1.ann1.29DKEH Arachis hypogaea HOM05D004240 ORTHO05D005082 3.7e-34 148.7 116 66.4
arahy.Tifrunner.gnm1.ann1.US6JCC Arachis hypogaea HOM05D004240 ORTHO05D005082 3.7e-34 148.7 116 66.4
Glyma.04G099100 Glycine max HOM05D004240 ORTHO05D005082 3.7e-34 148.7 116 64.7
CSS0016123 Camellia sinensis var. sinensis HOM05D004240 ORTHO05D005082 4.8e-34 148.3 118 64.4
Manes.18G063900 Manihot esculenta HOM05D004240 ORTHO05D005082 4.8e-34 148.3 121 64.5
vmacro18578 Vaccinium macrocarpon HOM05D004240 ORTHO05D005082 6.3e-34 147.9 118 63.6
CiPaw.04G103700 Carya illinoinensis HOM05D004240 ORTHO05D005082 1.1e-33 147.1 116 65.5
Manes.02G149200 Manihot esculenta HOM05D004240 ORTHO05D005082 1.1e-33 147.1 116 63.8
Rhsim10G0001600 Rhododendron simsii HOM05D004240 ORTHO05D005082 1.4e-33 146.7 118 63.6
Dinv44804 Davidia involucrata HOM05D004240 ORTHO05D005082 1.8e-33 146.4 118 64.4
Potri.006G070700 Populus trichocarpa HOM05D004240 ORTHO05D005082 1.8e-33 146.4 116 64.7
CDE10G0460 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 3.1e-33 145.6 107 69.2
COL.COLO4_12008 Corchorus olitorius HOM05D004240 ORTHO05D005082 3.1e-33 145.6 121 63.6
Haze_24725 Corylus avellana HOM05D004240 ORTHO05D005082 3.1e-33 145.6 116 65.5
Glyma.06G100800 Glycine max HOM05D004240 ORTHO05D005082 3.1e-33 145.6 116 62.9
MD02G1257900 Malus domestica HOM05D004240 ORTHO05D005082 3.1e-33 145.6 121 64.5
Rhsim08G0013500 Rhododendron simsii HOM05D004240 ORTHO05D005082 3.1e-33 145.6 118 62.7
TWI36G0317 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 3.1e-33 145.6 121 62.8
TAR381G0524 Trochodendron aralioides HOM05D004240 ORTHO05D005082 3.1e-33 145.6 116 65.5
Cfa002500 Carpinus fangiana HOM05D004240 ORTHO05D005082 4.1e-33 145.2 115 66.1
ClCG09G002640 Citrullus lanatus HOM05D004240 ORTHO05D005082 4.1e-33 145.2 114 65.8
Ciclev10013208m.g Citrus clementina HOM05D004240 ORTHO05D005082 4.1e-33 145.2 116 64.7
Gohir.A06G033500 Gossypium hirsutum HOM05D004240 ORTHO05D005082 4.1e-33 145.2 118 63.6
Gohir.D06G034400 Gossypium hirsutum HOM05D004240 ORTHO05D005082 4.1e-33 145.2 118 63.6
Gorai.010G037900 Gossypium raimondii HOM05D004240 ORTHO05D005082 4.1e-33 145.2 118 63.6
FAN15G0929 Fragaria x ananassa HOM05D004240 ORTHO05D005082 5.3e-33 144.8 121 62.8
FAN18G4030 Fragaria x ananassa HOM05D004240 ORTHO05D005082 5.3e-33 144.8 121 62.8
QL12p001007 Quercus lobata HOM05D004240 ORTHO05D005082 7.0e-33 144.4 115 65.2
Sabra06G0052600 Salix brachista HOM05D004240 ORTHO05D005082 9.1e-33 144.1 116 63.8
Sed0017764 Sechium edule HOM05D004240 ORTHO05D005082 9.1e-33 144.1 116 63.8
Sed0022777 Sechium edule HOM05D004240 ORTHO05D005082 9.1e-33 144.1 116 63.8
CDE10G1133 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 1.6e-32 143.3 106 69.8
MELO3C023395.2 Cucumis melo HOM05D004240 ORTHO05D005082 1.6e-32 143.3 118 62.7
FvH4_2g10720 Fragaria vesca HOM05D004240 ORTHO05D005082 1.6e-32 143.3 121 62.0
FAN04G0949 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.6e-32 143.3 121 62.0
CANSAT01G1074 Cannabis sativa HOM05D004240 ORTHO05D005082 2.0e-32 142.9 116 64.7
FvH4_5g36580 Fragaria vesca HOM05D004240 ORTHO05D005082 2.0e-32 142.9 121 62.0
FAN13G1462 Fragaria x ananassa HOM05D004240 ORTHO05D005082 2.0e-32 142.9 121 62.0
Nn1g05456 Nelumbo nucifera HOM05D004240 ORTHO05D005082 2.0e-32 142.9 115 64.3
GSVIVG01009082001 Vitis vinifera HOM05D004240 ORTHO05D005082 2.0e-32 142.9 115 63.5
CsaV3_7G032690 Cucumis sativus L. HOM05D004240 ORTHO05D005082 2.7e-32 142.5 114 64.0
Hma1.2p1_1613F.1_g293659 Hydrangea macrophylla HOM05D004240 ORTHO05D005082 2.7e-32 142.5 118 62.7
Peaxi162Scf00030g02315 Petunia axillaris HOM05D004240 ORTHO05D005082 2.7e-32 142.5 123 60.2
Peaxi162Scf00074g01332 Petunia axillaris HOM05D004240 ORTHO05D005082 2.7e-32 142.5 123 60.2
Thecc.08G102200 Theobroma cacao HOM05D004240 ORTHO05D005082 2.7e-32 142.5 118 61.9
Psat2g132800 Pisum sativum HOM05D004240 ORTHO05D005082 3.5e-32 142.1 116 62.1
Psat4g105040 Pisum sativum HOM05D004240 ORTHO05D005082 3.5e-32 142.1 116 62.1
Potri.005G161600 Populus trichocarpa HOM05D004240 ORTHO05D005082 3.5e-32 142.1 118 62.7
FAN08G1894 Fragaria x ananassa HOM05D004240 ORTHO05D005082 4.5e-32 141.7 107 66.4
FAN24G1588 Fragaria x ananassa HOM05D004240 ORTHO05D005082 4.5e-32 141.7 121 61.2
MD08G1188400 Malus domestica HOM05D004240 ORTHO05D005082 5.9e-32 141.4 121 62.0
RcHm_v2.0_Chr3g0492081 Rosa chinensis HOM05D004240 ORTHO05D005082 5.9e-32 141.4 118 61.0
RcHm_v2.0_Chr7g0242281 Rosa chinensis HOM05D004240 ORTHO05D005082 5.9e-32 141.4 118 61.0
Solyc04g074690.3 Solanum lycopersicum HOM05D004240 ORTHO05D005082 5.9e-32 141.4 119 58.0
Sopen04g029660 Solanum pennellii HOM05D004240 ORTHO05D005082 5.9e-32 141.4 119 58.0
Aqoxy2G03827 Aquilegia oxysepala HOM05D004240 ORTHO05D005082 7.7e-32 141.0 115 62.6
Duzib093G0975 Durio zibethinus HOM05D004240 ORTHO05D005082 7.7e-32 141.0 121 63.6
Rhsim02G0249800 Rhododendron simsii HOM05D004240 ORTHO05D005082 7.7e-32 141.0 118 61.0
DCAR_014024 Daucus carota HOM05D004240 ORTHO05D005082 1.0e-31 140.6 116 62.1
PGR004G1351 Punica granatum HOM05D004240 ORTHO05D005082 1.0e-31 140.6 115 63.5
Cc06_g04150 Coffea canephora HOM05D004240 ORTHO05D005082 1.3e-31 140.2 122 63.9
Medtr5g045910 Medicago truncatula HOM05D000029 ORTHO05D002519 1.7e-31 139.8 125 58.4
Ca_06044_v3 Cicer arietinum L. HOM05D004240 ORTHO05D005082 2.2e-31 139.4 116 59.5
HanXRQChr10g0278161 Helianthus annuus HOM05D004240 ORTHO05D005082 2.2e-31 139.4 123 59.3
PGR031G0804 Punica granatum HOM05D004240 ORTHO05D005082 2.2e-31 139.4 116 61.2
DCAR_010173 Daucus carota HOM05D004240 ORTHO05D005082 3.8e-31 138.7 116 61.2
PSO541G3534 Papaver somniferum HOM05D004240 ORTHO05D005082 3.8e-31 138.7 118 61.0
PSO675G3208 Papaver somniferum HOM05D004240 ORTHO05D005082 3.8e-31 138.7 118 61.0
FAN20G0937 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.1e-30 137.1 116 60.3
PSO700G0162 Papaver somniferum HOM05D004240 ORTHO05D005082 1.1e-30 137.1 115 60.9
Prupe.6G102500 Prunus persica HOM05D004240 ORTHO05D005082 1.1e-30 137.1 118 61.9
ECA246G1644 Erigeron canadensis HOM05D004240 ORTHO05D005082 1.9e-30 136.3 112 62.5
Lsat_1_v5_gn_6_104280 Lactuca sativa HOM05D004240 ORTHO05D005082 1.9e-30 136.3 120 60.8
Prupe.1G522900 Prunus persica HOM05D004240 ORTHO05D005082 2.5e-30 136.0 116 62.1
Thhalv10029093m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 4.2e-30 135.2 122 58.2
PSO447G0232 Papaver somniferum HOM05D004240 ORTHO05D005082 5.5e-30 134.8 115 60.0
EL10Ac6g15351 Beta vulgaris HOM05D004240 ORTHO05D005082 9.4e-30 134.0 101 68.3
Lalb_Chr23g0270361 Lupinus albus HOM05D004240 ORTHO05D005082 9.4e-30 134.0 116 58.6
TWI12G0685 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 1.6e-29 133.3 121 59.5
THA.LOC104813109 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 2.1e-29 132.9 121 59.5
THA.LOC104816621 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 2.7e-29 132.5 119 58.0
unitig_32.g11785 Utricularia gibba HOM05D004240 ORTHO05D005082 2.7e-29 132.5 120 60.0
HanXRQChr05g0163111 Helianthus annuus HOM05D004240 ORTHO05D005082 3.6e-29 132.1 121 59.5
Carub.0006s2760 Capsella rubella HOM05D004240 ORTHO05D005082 8.0e-29 131.0 122 57.4
Thhalv10028005m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 1.0e-28 130.6 121 57.0
Aa31LG9G14690 Aethionema arabicum HOM05D004240 ORTHO05D005082 1.4e-28 130.2 116 58.6
CARHR262430 Cardamine hirsuta HOM05D004240 ORTHO05D005082 1.8e-28 129.8 111 57.7
ECA247G1074 Erigeron canadensis HOM05D004240 ORTHO05D005082 1.8e-28 129.8 115 59.1
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 1.8e-28 129.8 108 61.1
AL6G41500 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 2.3e-28 129.4 122 57.4
AUR62041013 Chenopodium quinoa HOM05D004240 ORTHO05D005082 2.3e-28 129.4 99 68.7
Zm00001eb211130 Zea mays HOM05D004240 ORTHO05D005082 3.0e-28 129.0 117 59.0
SalBow8G1434 Salvia bowleyana HOM05D004240 ORTHO05D005082 4.0e-28 128.6 111 58.6
SalBow8G1852 Salvia bowleyana HOM05D004240 ORTHO05D005082 4.0e-28 128.6 111 58.6
Migut.H02239 Erythranthe guttata HOM05D004240 ORTHO05D005082 5.2e-28 128.3 106 61.3
SalBow1G5590 Salvia bowleyana HOM05D004240 ORTHO05D005082 5.2e-28 128.3 110 59.1
AT5G40080 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 8.8e-28 127.5 118 56.8
Carub.0007s3595 Capsella rubella HOM05D004240 ORTHO05D005082 8.8e-28 127.5 118 56.8
AT5G39800 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 1.2e-27 127.1 118 55.9
BolC3t15739H Brassica oleracea HOM05D004240 ORTHO05D005082 3.4e-27 125.6 115 55.7
Atru.chr8.235 Acer truncatum HOM05D004240 ORTHO05D005082 5.7e-27 124.8 98 65.3
A03p28370 Brassica napus HOM05D004240 ORTHO05D005082 2.2e-26 122.9 115 54.8
BraA03t12042Z Brassica rapa HOM05D004240 ORTHO05D005082 2.2e-26 122.9 115 54.8
Sp6g08590 Schrenkiella parvula HOM05D004240 ORTHO05D005082 2.2e-26 122.9 122 54.1
HPP92_003085 Vanilla planifolia HOM05D000111 ORTHO05D000134 2.2e-26 122.9 111 59.5
BcaC01g04739 Brassica carinata HOM05D004240 ORTHO05D005082 2.8e-26 122.5 115 54.8
C03p34300 Brassica napus HOM05D004240 ORTHO05D005082 2.8e-26 122.5 115 54.8
BcaB01g01378 Brassica carinata HOM05D004240 ORTHO05D005082 4.8e-26 121.7 122 53.3
Peaxi162Scf00701g00514 Petunia axillaris HOM05D004240 ORTHO05D005082 4.8e-26 121.7 116 53.4
Nitab4.5_0000786g0040 Nicotiana tabacum HOM05D004240 ORTHO05D005082 1.1e-25 120.6 99 61.6
Oeu048963.1 Olea europaea HOM05D004240 ORTHO05D005082 1.1e-25 120.6 104 58.7
AL7G50490 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 1.4e-25 120.2 118 54.2
Duzib041G0743 Durio zibethinus HOM05D004240 ORTHO05D005082 1.4e-25 120.2 98 63.3
Nn5g30001 Nelumbo nucifera HOM05D004240 ORTHO05D005082 1.4e-25 120.2 116 56.9
Oeu009430.2 Olea europaea HOM05D004240 ORTHO05D005082 1.4e-25 120.2 98 62.2
BcaC04g20940 Brassica carinata HOM05D004240 ORTHO05D005082 1.8e-25 119.8 122 52.5
A09p29740 Brassica napus HOM05D004240 ORTHO05D005082 1.8e-25 119.8 122 52.5
C09p37710 Brassica napus HOM05D004240 ORTHO05D005082 1.8e-25 119.8 122 52.5
BolC9t56602H Brassica oleracea HOM05D004240 ORTHO05D005082 1.8e-25 119.8 122 52.5
BraA09t38538Z Brassica rapa HOM05D004240 ORTHO05D005082 1.8e-25 119.8 122 52.5
Sabra05G0122300 Salix brachista HOM05D004240 ORTHO05D005082 1.8e-25 119.8 99 63.6
Nitab4.5_0003599g0030 Nicotiana tabacum HOM05D004240 ORTHO05D005082 2.4e-25 119.4 98 62.2
SalBow1G7711 Salvia bowleyana HOM05D004240 ORTHO05D005082 7.0e-25 117.9 119 53.8
PGSC0003DMG400030836 Solanum tuberosum HOM05D004240 ORTHO05D005082 9.1e-25 117.5 98 59.2
BcaB01g02826 Brassica carinata HOM05D004240 ORTHO05D005082 1.2e-24 117.1 115 53.0
AUR62043370 Chenopodium quinoa HOM05D004240 ORTHO05D005082 1.2e-24 117.1 99 62.6
CAN.G857.13 Capsicum annuum HOM05D004240 ORTHO05D005082 1.6e-24 116.7 99 58.6
Atru.chr13.1119 Acer truncatum HOM05D004240 ORTHO05D005082 3.8e-23 112.1 101 58.4
Nitab4.5_0002632g0100 Nicotiana tabacum HOM05D004240 ORTHO05D005082 2.5e-22 109.4 139 44.6
Aqoxy2G00790 Aquilegia oxysepala HOM05D004240 ORTHO05D005082 2.8e-21 105.9 99 57.6
Zm00001eb032040 Zea mays HOM05D004240 ORTHO05D005082 4.0e-20 102.1 99 57.6
CAN.G900.47 Capsicum annuum HOM05D004240 ORTHO05D005082 4.4e-19 98.6 95 51.6
Gohir.D05G226400 Gossypium hirsutum HOM05D004240 ORTHO05D005082 5.7e-19 98.2 118 46.6
Gorai.009G234000 Gossypium raimondii HOM05D004240 ORTHO05D005082 8.3e-18 94.4 117 50.4
Actinidia06540 Actinidia chinensis HOM05D004240 ORTHO05D005082 1.6e-16 90.1 78 59.0
SalBow1G3565 Salvia bowleyana HOM05D004240 ORTHO05D005082 3.5e-16 89.0 70 58.6
Cc03_g14470 Coffea canephora HOM05D004240 ORTHO05D005082 7.8e-16 87.8 101 45.5
Hma1.2p1_1148F.1_g261590 Hydrangea macrophylla HOM05D004240 ORTHO05D005082 1.0e-15 87.4 49 81.6
SalBow1G1735 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.3e-15 87.0 57 68.4
SalBow1G5084 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.3e-15 87.0 57 68.4
SalBow1G6918 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.3e-15 87.0 57 68.4
SalBow1G8490 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.3e-15 87.0 57 68.4
Nitab4.5_0000101g0440 Nicotiana tabacum HOM05D004240 ORTHO05D005082 2.3e-15 86.3 121 42.1
Pp3c24_110 Physcomitrium patens HOM05D004240 ORTHO05D005082 1.1e-14 84.0 119 43.7
AT4G09012 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 2.5e-14 82.8 49 75.5
SalBow5G4864 Salvia bowleyana HOM05D004240 ORTHO05D005082 5.6e-14 81.6 49 73.5
SalBow1G1053 Salvia bowleyana HOM05D004240 ORTHO05D005082 7.3e-14 81.3 53 67.9
Mapoly0032s0009 Marchantia polymorpha HOM05D004240 ORTHO05D005082 9.5e-14 80.9 104 43.3
HanXRQChr02g0058081 Helianthus annuus HOM05D004240 ORTHO05D005082 6.8e-12 74.7 55 60.0
MBI04_g21152_MAGBIO Magnolia biondii HOM05D004240 ORTHO05D005082 1.3e-10 70.5 46 73.9
AagrBONN_evm.TU.Sc2ySwM_368.1442 Anthoceros agrestis HOM05D004240 ORTHO05D005082 2.2e-10 69.7 120 39.2
TWI56G0038 Tripterygium wilfordii HOM05D004240 ORTHO05D413666 6.6e-07 58.2 55 54.5


User provided reference genes

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