Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g192010 Amaranthus hybridus HOM05D003701 ORTHO05D004771 1.5e-245 852.4 436 100.0
Hund12041 Selenicereus undatus HOM05D003701 ORTHO05D004771 1.0e-214 750.0 440 88.2
AUR62037661 Chenopodium quinoa HOM05D003701 ORTHO05D004771 4.4e-213 744.6 457 84.7
AUR62041045 Chenopodium quinoa HOM05D003701 ORTHO05D004771 9.7e-213 743.4 437 87.6
EL10Ac2g03249 Beta vulgaris HOM05D003701 ORTHO05D004771 4.5e-210 734.6 440 86.4
Sc06g0004590 Simmondsia chinensis HOM05D003701 ORTHO05D004771 3.8e-201 704.9 436 82.6
Migut.F01774 Erythranthe guttata HOM05D003701 ORTHO05D004771 9.5e-200 700.3 437 81.5
MSTRG.367 Avicennia marina HOM05D003701 ORTHO05D004771 1.6e-199 699.5 439 81.1
TAR633G1876 Trochodendron aralioides HOM05D003701 ORTHO05D004771 1.6e-199 699.5 439 81.1
SGA_v2.0_scaffold51G18675 Striga asiatica HOM05D003701 ORTHO05D004771 6.1e-199 697.6 438 81.3
TAR623G1268 Trochodendron aralioides HOM05D003701 ORTHO05D004771 6.1e-199 697.6 440 81.6
Sc09g0006470 Simmondsia chinensis HOM05D003701 ORTHO05D004771 2.3e-198 695.7 438 82.0
Dinv11780 Davidia involucrata HOM05D003701 ORTHO05D004771 1.2e-197 693.3 440 80.0
MSTRG.8153 Avicennia marina HOM05D003701 ORTHO05D004771 1.5e-197 693.0 434 82.0
GSVIVG01016288001 Vitis vinifera HOM05D003701 ORTHO05D004771 5.7e-197 691.0 427 82.7
CSS0025729 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 6.3e-196 687.6 433 79.0
Hma1.2p1_1004F.1_g246800 Hydrangea macrophylla HOM05D003701 ORTHO05D004771 1.3e-193 679.9 439 79.0
CAN.G186.45 Capsicum annuum HOM05D003701 ORTHO05D004771 2.3e-193 679.1 441 77.8
Nitab4.5_0005490g0010 Nicotiana tabacum HOM05D003701 ORTHO05D004771 2.3e-193 679.1 446 78.3
arahy.Tifrunner.gnm1.ann1.X76XU5 Arachis hypogaea HOM05D003701 ORTHO05D004771 2.9e-193 678.7 434 79.0
PGSC0003DMG400016016 Solanum tuberosum HOM05D003701 ORTHO05D004771 6.6e-193 677.6 439 79.0
Atru.chr12.740 Acer truncatum HOM05D003701 ORTHO05D004771 8.6e-193 677.2 433 78.3
HanXRQChr09g0249701 Helianthus annuus HOM05D003701 ORTHO05D004771 1.9e-192 676.0 439 77.7
PGSC0003DMG400024392 Solanum tuberosum HOM05D003701 ORTHO05D004771 4.3e-192 674.9 441 78.0
TWI74G0111 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 4.3e-192 674.9 436 76.8
TWI74G0263 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 4.3e-192 674.9 436 76.8
HanXRQChr15g0496661 Helianthus annuus HOM05D003701 ORTHO05D004771 5.6e-192 674.5 440 78.0
arahy.Tifrunner.gnm1.ann1.V7IKH4 Arachis hypogaea HOM05D003701 ORTHO05D004771 7.3e-192 674.1 434 78.6
Manes.10G045200 Manihot esculenta HOM05D003701 ORTHO05D004771 1.2e-191 673.3 431 79.4
QL08p056106 Quercus lobata HOM05D003701 ORTHO05D004771 1.2e-191 673.3 437 78.3
Solyc04g049350.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 1.2e-191 673.3 435 78.6
Sopen04g019270 Solanum pennellii HOM05D003701 ORTHO05D004771 1.2e-191 673.3 432 78.9
Glyma.20G179500 Glycine max HOM05D003701 ORTHO05D004771 2.8e-191 672.2 425 79.3
Lsat_1_v5_gn_2_114381 Lactuca sativa HOM05D003701 ORTHO05D004771 8.0e-191 670.6 442 77.1
Sopen04g004770 Solanum pennellii HOM05D003701 ORTHO05D004771 1.0e-190 670.2 430 78.8
Nn2g13085 Nelumbo nucifera HOM05D003701 ORTHO05D004771 1.4e-190 669.8 431 78.9
Duzib106G0278 Durio zibethinus HOM05D003701 ORTHO05D004771 5.2e-190 667.9 441 76.4
Eucgr.G02824 Eucalyptus grandis HOM05D003701 ORTHO05D004771 2.0e-189 666.0 427 78.5
DCAR_015315 Daucus carota HOM05D003701 ORTHO05D004771 3.4e-189 665.2 432 78.7
Phvul.007G094200 Phaseolus vulgaris HOM05D003701 ORTHO05D004771 3.4e-189 665.2 425 78.6
Thecc.10G072600 Theobroma cacao HOM05D003701 ORTHO05D004771 3.4e-189 665.2 438 76.3
Peaxi162Scf00747g00122 Petunia axillaris HOM05D003701 ORTHO05D004771 4.4e-189 664.8 435 79.1
VMungo0720G1162 Vigna mungo HOM05D003701 ORTHO05D004771 4.4e-189 664.8 435 77.7
Gohir.A10G206500 Gossypium hirsutum HOM05D003701 ORTHO05D004771 5.8e-189 664.5 430 77.7
Solyc04g009620.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 7.5e-189 664.1 429 78.6
Cpa.g.sc53.71 Carica papaya HOM05D003701 ORTHO05D004771 1.7e-188 662.9 448 76.6
Gohir.D10G214600 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.7e-188 662.9 430 77.7
Potri.008G040700 Populus trichocarpa HOM05D003701 ORTHO05D004771 2.2e-188 662.5 433 76.0
Potri.010G221600 Populus trichocarpa HOM05D003701 ORTHO05D004771 2.9e-188 662.1 435 77.5
Ca_10573_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 6.4e-188 661.0 428 78.3
Ca_29596_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 6.4e-188 661.0 428 78.3
CiPaw.02G174300 Carya illinoinensis HOM05D003701 ORTHO05D004771 8.3e-188 660.6 433 76.4
Actinidia38848 Actinidia chinensis HOM05D003701 ORTHO05D004771 1.1e-187 660.2 438 76.5
Aqoxy1G01249 Aquilegia oxysepala HOM05D003701 ORTHO05D004771 1.1e-187 660.2 436 75.9
Ciclev10031547m.g Citrus clementina HOM05D003701 ORTHO05D004771 1.1e-187 660.2 436 76.6
Thhalv10011486m.g Eutrema salsugineum HOM05D003701 ORTHO05D004771 1.4e-187 659.8 425 77.4
THA.LOC104827296 Tarenaya hassleriana HOM05D003701 ORTHO05D004771 1.4e-187 659.8 434 77.2
Nitab4.5_0001029g0070 Nicotiana tabacum HOM05D003701 ORTHO05D004771 1.9e-187 659.4 467 74.1
Carub.0001s3800 Capsella rubella HOM05D003701 ORTHO05D004771 2.4e-187 659.1 434 76.0
Gohir.A05G297100 Gossypium hirsutum HOM05D003701 ORTHO05D004771 2.4e-187 659.1 439 75.4
Glyma.10G211400 Glycine max HOM05D003701 ORTHO05D004771 4.1e-187 658.3 425 77.2
Gorai.011G240200 Gossypium raimondii HOM05D003701 ORTHO05D004771 4.1e-187 658.3 402 80.6
Gohir.D05G297000 Gossypium hirsutum HOM05D003701 ORTHO05D004771 5.4e-187 657.9 438 74.9
Gorai.009G314200 Gossypium raimondii HOM05D003701 ORTHO05D004771 5.4e-187 657.9 438 74.9
MBI10_g04889_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 5.4e-187 657.9 440 76.1
BcaC05g27549 Brassica carinata HOM05D003701 ORTHO05D004771 7.0e-187 657.5 425 76.7
C05p35350 Brassica napus HOM05D003701 ORTHO05D004771 7.0e-187 657.5 425 76.7
BolC5t32248H Brassica oleracea HOM05D003701 ORTHO05D004771 7.0e-187 657.5 425 76.7
AL1G55580 Arabidopsis lyrata HOM05D003701 ORTHO05D004771 9.2e-187 657.1 434 75.6
TPR.G1904 Trifolium pratense HOM05D003701 ORTHO05D004771 9.2e-187 657.1 426 78.4
Lalb_Chr06g0162271 Lupinus albus HOM05D003701 ORTHO05D004771 1.2e-186 656.8 432 77.5
Medtr1g095250 Medicago truncatula HOM05D003701 ORTHO05D004771 1.2e-186 656.8 425 78.4
PSO063G5795 Papaver somniferum HOM05D003701 ORTHO05D004771 1.2e-186 656.8 426 78.6
PSO339G3023 Papaver somniferum HOM05D003701 ORTHO05D004771 1.6e-186 656.4 426 78.4
AT1G48850 Arabidopsis thaliana HOM05D003701 ORTHO05D004771 2.0e-186 656.0 433 75.8
BolC8t47272H Brassica oleracea HOM05D003701 ORTHO05D004771 2.7e-186 655.6 425 76.9
BcaB04g17381 Brassica carinata HOM05D003701 ORTHO05D004771 3.5e-186 655.2 426 77.0
A08p04400 Brassica napus HOM05D003701 ORTHO05D004771 3.5e-186 655.2 425 76.9
C08p04710 Brassica napus HOM05D003701 ORTHO05D004771 3.5e-186 655.2 425 76.9
Sabra08G0027700 Salix brachista HOM05D003701 ORTHO05D004771 3.5e-186 655.2 442 75.6
BcaC07g37102 Brassica carinata HOM05D003701 ORTHO05D004771 4.6e-186 654.8 425 76.9
A05p20860 Brassica napus HOM05D003701 ORTHO05D004771 6.0e-186 654.4 425 76.7
BraA05t20991Z Brassica rapa HOM05D003701 ORTHO05D004771 6.0e-186 654.4 425 76.7
BraA08t32466Z Brassica rapa HOM05D003701 ORTHO05D004771 7.8e-186 654.1 425 76.7
Lj1A914T43 Lonicera japonica HOM05D003701 ORTHO05D004771 7.8e-186 654.1 428 79.7
Lj5g0008768 Lotus japonicus HOM05D003701 ORTHO05D004771 1.0e-185 653.7 428 76.9
Lalb_Chr02g0142141 Lupinus albus HOM05D003701 ORTHO05D004771 1.0e-185 653.7 437 76.2
Sp1g35740 Schrenkiella parvula HOM05D003701 ORTHO05D004771 1.3e-185 653.3 425 76.7
CsaV3_6G036360 Cucumis sativus L. HOM05D003701 ORTHO05D004771 3.0e-185 652.1 433 76.0
CARHR038850 Cardamine hirsuta HOM05D003701 ORTHO05D004771 3.9e-185 651.7 426 75.8
ClCG08G007450 Citrullus lanatus HOM05D003701 ORTHO05D004771 3.9e-185 651.7 440 75.2
FAN03G0046 Fragaria x ananassa HOM05D003701 ORTHO05D004771 8.6e-185 650.6 425 77.6
MELO3C019790.2 Cucumis melo HOM05D003701 ORTHO05D004771 1.9e-184 649.4 433 75.8
RcHm_v2.0_Chr1g0363491 Rosa chinensis HOM05D003701 ORTHO05D004771 3.3e-184 648.7 427 77.3
FvH4_7g19670 Fragaria vesca HOM05D003701 ORTHO05D004771 4.3e-184 648.3 425 77.4
BcaB02g11304 Brassica carinata HOM05D003701 ORTHO05D004771 1.2e-183 646.7 425 76.0
CANSAT56G3258 Cannabis sativa HOM05D003701 ORTHO05D004771 1.2e-183 646.7 434 75.6
MD01G1108900 Malus domestica HOM05D003701 ORTHO05D004771 1.2e-183 646.7 435 74.5
arahy.Tifrunner.gnm1.ann1.6FL4NC Arachis hypogaea HOM05D003701 ORTHO05D004771 2.8e-183 645.6 440 75.5
ECA232G2521 Erigeron canadensis HOM05D003701 ORTHO05D004771 2.8e-183 645.6 428 76.9
Actinidia03057 Actinidia chinensis HOM05D003701 ORTHO05D004771 3.6e-183 645.2 431 75.2
FAN06G0474 Fragaria x ananassa HOM05D003701 ORTHO05D004771 4.7e-183 644.8 425 76.9
Aa31LG10G4830 Aethionema arabicum HOM05D003701 ORTHO05D004771 6.2e-183 644.4 431 76.3
FAN10G2919 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.1e-182 643.7 425 76.9
ATR0115G006 Amborella trichopoda HOM05D003701 ORTHO05D004771 2.3e-182 642.5 430 75.6
Migut.F01773 Erythranthe guttata HOM05D003701 ORTHO05D004771 3.1e-182 642.1 407 78.6
Rhsim09G0152400 Rhododendron simsii HOM05D003701 ORTHO05D004771 3.1e-182 642.1 514 67.1
MBI02_g43493_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 4.0e-182 641.7 431 75.9
unitig_899.g14441 Utricularia gibba HOM05D003701 ORTHO05D004771 2.0e-181 639.4 432 76.6
CDE04G2332 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 3.4e-181 638.6 438 74.0
Sed0016616 Sechium edule HOM05D003701 ORTHO05D004771 3.4e-181 638.6 429 75.1
vmacro04876 Vaccinium macrocarpon HOM05D003701 ORTHO05D004771 7.5e-181 637.5 553 62.4
Sabra10G0171500 Salix brachista HOM05D003701 ORTHO05D004771 2.9e-180 635.6 484 68.6
MD07G1175200 Malus domestica HOM05D003701 ORTHO05D004771 4.9e-180 634.8 435 74.3
Gohir.A10G206400 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.2e-178 630.2 438 71.9
PGR142G1908 Punica granatum HOM05D003701 ORTHO05D004771 1.2e-178 630.2 425 75.8
Gorai.011G240100 Gossypium raimondii HOM05D003701 ORTHO05D004771 2.1e-178 629.4 438 72.1
FAN01G1080 Fragaria x ananassa HOM05D003701 ORTHO05D004771 6.6e-177 624.4 464 70.9
SEGI_31492 Sequoiadendron giganteum HOM05D003701 ORTHO05D004771 8.6e-177 624.0 430 74.9
HPP92_012666 Vanilla planifolia HOM05D003701 ORTHO05D004771 1.2e-175 620.2 397 77.3
CSS0011231 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 8.1e-175 617.5 434 72.6
FAN10G2344 Fragaria x ananassa HOM05D003701 ORTHO05D004771 5.2e-174 614.8 425 74.8
Duzib114G1041 Durio zibethinus HOM05D003701 ORTHO05D004771 1.2e-173 613.6 444 72.5
Os03g0254800 Oryza sativa ssp. japonica HOM05D003701 ORTHO05D004771 5.8e-173 611.3 388 75.8
SalBow4G1339 Salvia bowleyana HOM05D003701 ORTHO05D004771 8.3e-172 607.4 428 73.1
CAN.G186.44 Capsicum annuum HOM05D003701 ORTHO05D004771 4.1e-171 605.1 392 76.5
Mapoly0007s0052 Marchantia polymorpha HOM05D003701 ORTHO05D004771 4.1e-171 605.1 381 79.0
AagrBONN_evm.TU.Sc2ySwM_369.393 Anthoceros agrestis HOM05D003701 ORTHO05D004771 1.2e-170 603.6 380 79.2
SMO146G0105 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 3.0e-169 599.0 379 78.1
GSVIVG01025176001 Vitis vinifera HOM05D003701 ORTHO05D004771 3.0e-169 599.0 384 76.0
DCAR_012659 Daucus carota HOM05D003701 ORTHO05D004771 6.2e-167 591.3 401 72.8
Gohir.D05G297025 Gossypium hirsutum HOM05D003701 ORTHO05D004771 2.6e-165 585.9 437 69.8
arahy.Tifrunner.gnm1.ann1.914CGH Arachis hypogaea HOM05D003701 ORTHO05D004771 7.6e-165 584.3 342 82.2
Oeu027479.1 Olea europaea HOM05D003701 ORTHO05D004771 4.8e-159 565.1 353 81.6
Dinv31329 Davidia involucrata HOM05D003701 ORTHO05D004771 1.2e-157 560.5 346 82.4
Oeu007390.4 Olea europaea HOM05D003701 ORTHO05D004771 2.9e-156 555.8 337 82.2
Psat6g184400 Pisum sativum HOM05D003701 ORTHO05D004771 2.9e-156 555.8 359 77.7
CiPaw.01G273500 Carya illinoinensis HOM05D003701 ORTHO05D004771 3.8e-156 555.4 347 79.8
Prupe.2G214400 Prunus persica HOM05D003701 ORTHO05D004771 1.0e-153 547.4 362 76.5
unitig_736.g22517 Utricularia gibba HOM05D003701 ORTHO05D004771 8.4e-148 527.7 425 66.8
Zm00001eb011020 Zea mays HOM05D003701 ORTHO05D004771 5.1e-145 518.5 331 76.1
MCO05G587 Micromonas commoda HOM05D003701 ORTHO05D004771 1.1e-144 517.3 372 71.0
Cre03.g145747 Chlamydomonas reinhardtii HOM05D003701 ORTHO05D004771 1.5e-144 516.9 374 68.7
CANSAT78G2428 Cannabis sativa HOM05D003701 ORTHO05D004771 7.4e-144 514.6 377 66.6
CDE07G1562 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 3.8e-140 502.3 438 61.6
PRCOL_00001179 Prasinoderma coloniale HOM05D003701 ORTHO05D004771 4.9e-140 501.9 373 69.2
Eucgr.J01090 Eucalyptus grandis HOM05D003701 ORTHO05D004771 1.9e-139 500.0 348 73.3
COL.COLO4_23690 Corchorus olitorius HOM05D003701 ORTHO05D004771 5.3e-126 455.3 261 83.5
Zm00001eb398410 Zea mays HOM05D003701 ORTHO05D004771 3.8e-124 449.1 319 68.7
Pp3c1_35940 Physcomitrium patens HOM05D003701 ORTHO05D004771 2.8e-119 433.0 273 78.4
COL.COLO4_23691 Corchorus olitorius HOM05D003701 ORTHO05D004771 5.9e-117 425.2 270 79.6
CBR_g41627 Chara braunii HOM05D003701 ORTHO05D004771 1.0e-108 397.9 416 54.1
Haze_16899 Corylus avellana HOM05D003701 ORTHO05D004771 2.0e-101 373.6 236 78.8
Cc09_g02040 Coffea canephora HOM05D003701 ORTHO05D004771 1.8e-86 323.9 185 85.9
Cc09_g02030 Coffea canephora HOM05D003701 ORTHO05D004771 7.0e-86 322.0 232 71.1
Gohir.D10G214532 Gossypium hirsutum HOM05D003701 ORTHO05D004771 7.7e-85 318.5 240 67.1
Gohir.D10G214466 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.2e-80 304.7 194 77.3
Haze_27259 Corylus avellana HOM05D003701 ORTHO05D004771 4.4e-80 302.8 365 44.7
Cfa022484 Carpinus fangiana HOM05D003701 ORTHO05D004771 1.1e-78 298.1 355 49.0
SHI12194 Sapria himalayana HOM05D003666 ORTHO05D004770 3.5e-69 266.5 155 80.0
MSTRG.366 Avicennia marina HOM05D003701 ORTHO05D004771 5.4e-62 242.7 191 66.5
TAR636G0034 Trochodendron aralioides HOM05D003701 ORTHO05D004771 2.3e-60 237.3 229 58.5
TAR636G0416 Trochodendron aralioides HOM05D003701 ORTHO05D004771 2.3e-60 237.3 229 58.5
RcHm_v2.0_Chr4g0427911 Rosa chinensis HOM05D003701 ORTHO05D004771 2.0e-56 224.2 220 60.5
FAN12G0728 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.6e-53 214.5 244 54.5
Glyma.14G185633 Glycine max HOM05D003701 ORTHO05D004771 2.2e-39 167.5 99 80.8
MD01G1109200 Malus domestica HOM05D003701 ORTHO05D004771 5.4e-38 162.9 154 57.1
SMO173G0015 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 2.8e-34 150.6 220 48.6
FAN17G1952 Fragaria x ananassa HOM05D003701 ORTHO05D004771 9.6e-27 125.6 295 37.6
QL07p006097 Quercus lobata HOM05D003701 ORTHO05D030296 2.4e-25 120.9 82 72.0
Oeu052763.1 Olea europaea HOM05D003701 ORTHO05D030296 7.1e-22 109.4 60 88.3
VMungo0647G0194 Vigna mungo HOM05D003701 ORTHO05D432816 4.3e-19 100.1 89 64.0
QL07p006183 Quercus lobata HOM05D003701 ORTHO05D030296 2.1e-18 97.8 63 76.2
QL09p045974 Quercus lobata HOM05D003701 ORTHO05D030296 2.1e-18 97.8 63 76.2
FAN01G1877 Fragaria x ananassa HOM05D003701 ORTHO05D208017 3.7e-18 97.1 75 68.0
Medtr0368s0020 Medicago truncatula HOM05D003701 ORTHO05D026922 6.5e-15 86.3 49 83.7
Oeu043945.1 Olea europaea HOM05D003701 ORTHO05D004771 6.5e-15 86.3 46 87.0
FAN12G0587 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.4e-14 85.1 90 51.1
Glyma.14G185666 Glycine max HOM05D003701 ORTHO05D026922 1.6e-13 81.6 47 85.1
Actinidia38274 Actinidia chinensis HOM05D003701 ORTHO05D012924 5.7e-11 73.2 43 79.1
C02p38530 Brassica napus HOM05D003701 ORTHO05D101262 4.1e-09 67.0 74 50.0
MBI09_g06128_MAGBIO Magnolia biondii HOM05D018637 ORTHO05D012924 5.3e-09 66.6 43 69.8
CBR_g74262 Chara braunii HOM05D003701 ORTHO05D004771 6.9e-09 66.2 43 76.7
BolC2t09870H Brassica oleracea HOM05D003701 ORTHO05D041413 1.2e-08 65.5 74 51.4
C05p40290 Brassica napus HOM05D003701 ORTHO05D041413 1.0e-07 62.4 74 50.0


User provided reference genes

Program Settings