Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g191950 Amaranthus hybridus HOM05D006219 ORTHO05D007562 1.1e-254 882.9 454 100.0
AUR62037607 Chenopodium quinoa HOM05D006219 ORTHO05D007562 8.2e-162 574.3 414 72.0
AUR62004874 Chenopodium quinoa HOM05D006219 ORTHO05D007562 1.4e-142 510.4 346 74.0
EL10Ac4g09057 Beta vulgaris HOM05D006219 ORTHO05D007562 1.4e-140 503.8 465 61.7
Sc06g0004060 Simmondsia chinensis HOM05D006219 ORTHO05D007562 6.1e-133 478.4 440 56.6
CsaV3_1G045560 Cucumis sativus L. HOM05D006219 ORTHO05D007562 2.3e-124 449.9 412 55.6
ClCG06G009410 Citrullus lanatus HOM05D006219 ORTHO05D007562 1.3e-122 444.1 415 55.4
TAR633G0272 Trochodendron aralioides HOM05D006219 ORTHO05D007562 7.0e-121 438.3 420 55.0
MELO3C024664.2 Cucumis melo HOM05D006219 ORTHO05D007562 1.6e-120 437.2 415 54.2
Lj5g0004576 Lotus japonicus HOM05D006219 ORTHO05D007562 2.2e-119 433.3 445 52.4
CiPaw.07G078300 Carya illinoinensis HOM05D006219 ORTHO05D007562 5.0e-119 432.2 451 51.9
TWI36G0216 Tripterygium wilfordii HOM05D006219 ORTHO05D007562 8.5e-119 431.4 403 54.3
QL03p031869 Quercus lobata HOM05D006219 ORTHO05D007562 4.2e-118 429.1 449 52.1
CSS0036761 Camellia sinensis var. sinensis HOM05D006219 ORTHO05D007562 9.4e-118 427.9 390 55.6
QL08p015782 Quercus lobata HOM05D006219 ORTHO05D007562 1.6e-117 427.2 449 51.9
Cpa.g.sc162.24 Carica papaya HOM05D006219 ORTHO05D007562 2.7e-117 426.4 417 53.5
Haze_04459 Corylus avellana HOM05D006219 ORTHO05D007562 3.6e-117 426.0 439 53.8
Lj2C39T18 Lonicera japonica HOM05D006219 ORTHO05D007562 3.6e-117 426.0 455 52.5
Potri.013G044900 Populus trichocarpa HOM05D006219 ORTHO05D007562 4.7e-117 425.6 446 52.0
Manes.09G149100 Manihot esculenta HOM05D006219 ORTHO05D007562 6.1e-117 425.2 449 52.6
Cfa006329 Carpinus fangiana HOM05D006219 ORTHO05D007562 1.8e-116 423.7 403 55.3
Lalb_Chr06g0168341 Lupinus albus HOM05D006219 ORTHO05D007562 1.8e-116 423.7 415 54.0
Prupe.6G348600 Prunus persica HOM05D006219 ORTHO05D007562 5.2e-116 422.2 414 52.9
CANSAT54G2996 Cannabis sativa HOM05D006219 ORTHO05D007562 6.8e-116 421.8 415 52.3
Atru.chr2.897 Acer truncatum HOM05D006219 ORTHO05D007562 9.8e-115 417.9 398 54.5
Sed0012882 Sechium edule HOM05D006219 ORTHO05D007562 2.2e-114 416.8 420 52.6
Thecc.05G275300 Theobroma cacao HOM05D006219 ORTHO05D007562 2.8e-114 416.4 439 51.3
Gohir.D13G107000 Gossypium hirsutum HOM05D006219 ORTHO05D007562 3.7e-114 416.0 457 51.0
Gorai.013G120100 Gossypium raimondii HOM05D006219 ORTHO05D007562 4.8e-114 415.6 457 51.0
FAN05G4153 Fragaria x ananassa HOM05D006219 ORTHO05D007562 6.3e-114 415.2 403 52.6
Gohir.A13G103800 Gossypium hirsutum HOM05D006219 ORTHO05D007562 6.3e-114 415.2 457 51.0
Duzib128G1627 Durio zibethinus HOM05D006219 ORTHO05D007562 1.1e-113 414.5 447 49.2
Glyma.10G166900 Glycine max HOM05D006219 ORTHO05D007562 2.4e-113 413.3 433 52.2
FAN02G1274 Fragaria x ananassa HOM05D006219 ORTHO05D007562 5.4e-113 412.1 403 52.6
Sabra13G0041300 Salix brachista HOM05D006219 ORTHO05D007562 5.4e-113 412.1 451 50.3
FAN05G2712 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.2e-112 411.0 403 52.1
FAN09G4845 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.6e-112 410.6 389 53.5
Phvul.L001763 Phaseolus vulgaris HOM05D006219 ORTHO05D007562 5.9e-112 408.7 458 50.0
VMungo0720G3050 Vigna mungo HOM05D006219 ORTHO05D007562 1.0e-111 407.9 451 50.6
FvH4_6g02280 Fragaria vesca HOM05D006219 ORTHO05D007562 8.6e-111 404.8 460 49.6
Medtr1g079870 Medicago truncatula HOM05D006219 ORTHO05D007562 1.9e-110 403.7 453 51.4
CAN.G582.15 Capsicum annuum HOM05D006219 ORTHO05D007562 7.2e-110 401.7 452 51.5
PGR004G0430 Punica granatum HOM05D006219 ORTHO05D007562 7.2e-110 401.7 457 48.6
Ca_10007_v3 Cicer arietinum L. HOM05D006219 ORTHO05D007562 9.5e-110 401.4 469 48.0
Aqoxy5G00261 Aquilegia oxysepala HOM05D006219 ORTHO05D007562 2.1e-109 400.2 399 50.6
MD12G1245900 Malus domestica HOM05D006219 ORTHO05D007562 1.0e-108 397.9 457 47.9
PSO210G1007 Papaver somniferum HOM05D006219 ORTHO05D007562 5.2e-108 395.6 394 50.5
Dinv06988 Davidia involucrata HOM05D006219 ORTHO05D007562 8.9e-108 394.8 437 49.9
PSO832G3978 Papaver somniferum HOM05D006219 ORTHO05D007562 5.7e-107 392.1 394 50.0
AL6G40560 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 9.8e-107 391.3 406 51.0
Lsat_1_v5_gn_2_107721 Lactuca sativa HOM05D006219 ORTHO05D007562 1.4e-105 387.5 426 49.8
Oeu029038.1 Olea europaea HOM05D006219 ORTHO05D007562 1.8e-105 387.1 421 49.9
Sopen11g002000 Solanum pennellii HOM05D006219 ORTHO05D007562 2.4e-105 386.7 463 50.1
ECA238G2300 Erigeron canadensis HOM05D006219 ORTHO05D007562 3.1e-105 386.3 398 51.0
THA.LOC104799246 Tarenaya hassleriana HOM05D006219 ORTHO05D007562 5.4e-105 385.6 463 49.5
BcaC09g47795 Brassica carinata HOM05D006219 ORTHO05D007562 7.0e-105 385.2 424 50.5
HanXRQChr07g0201901 Helianthus annuus HOM05D006219 ORTHO05D007562 7.0e-105 385.2 397 51.4
BraA01t04521Z Brassica rapa HOM05D006219 ORTHO05D007562 1.2e-104 384.4 424 50.7
Aa31LG11G8710 Aethionema arabicum HOM05D006219 ORTHO05D007562 1.6e-104 384.0 457 49.7
Carub.0006s2578 Capsella rubella HOM05D006219 ORTHO05D007562 1.6e-104 384.0 406 50.5
Rhsim05G0175300 Rhododendron simsii HOM05D006219 ORTHO05D007562 1.6e-104 384.0 377 53.1
Solyc11g006060.2 Solanum lycopersicum HOM05D006219 ORTHO05D007562 3.5e-104 382.9 452 50.9
BolC1t05743H Brassica oleracea HOM05D006219 ORTHO05D007562 7.8e-104 381.7 430 50.2
Peaxi162Scf00120g00021 Petunia axillaris HOM05D006219 ORTHO05D007562 1.0e-103 381.3 462 47.0
Sp2g20170 Schrenkiella parvula HOM05D006219 ORTHO05D007562 2.3e-103 380.2 430 49.3
Actinidia06785 Actinidia chinensis HOM05D006219 ORTHO05D007562 2.9e-103 379.8 440 48.6
BcaNung01728 Brassica carinata HOM05D006219 ORTHO05D007562 2.9e-103 379.8 406 51.2
A01p40850 Brassica napus HOM05D006219 ORTHO05D007562 3.8e-103 379.4 425 50.4
BNapus_Darmor_BZH_scaffold_78p00860 Brassica napus HOM05D006219 ORTHO05D007562 3.8e-103 379.4 425 50.4
PGSC0003DMG400028668 Solanum tuberosum HOM05D006219 ORTHO05D007562 5.0e-103 379.0 463 49.5
Migut.F00810 Erythranthe guttata HOM05D006219 ORTHO05D007562 8.6e-103 378.3 422 49.3
BraA06t26711Z Brassica rapa HOM05D006219 ORTHO05D007562 2.5e-102 376.7 416 50.0
Thhalv10004236m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 2.5e-102 376.7 441 48.3
DCAR_030973 Daucus carota HOM05D006219 ORTHO05D007562 7.3e-102 375.2 389 49.4
A06p37950 Brassica napus HOM05D006219 ORTHO05D007562 1.2e-101 374.4 416 50.0
CARHR185150 Cardamine hirsuta HOM05D006219 ORTHO05D007562 1.6e-101 374.0 416 49.3
C07p40330 Brassica napus HOM05D006219 ORTHO05D007562 2.1e-101 373.6 416 49.8
AT5G28500 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 4.7e-101 372.5 441 48.1
BcaB04g21366 Brassica carinata HOM05D006219 ORTHO05D007562 4.7e-101 372.5 460 48.3
BcaNung02093 Brassica carinata HOM05D006219 ORTHO05D007562 6.1e-101 372.1 417 49.4
BolC7t44567H Brassica oleracea HOM05D006219 ORTHO05D007562 6.1e-101 372.1 417 49.4
Nitab4.5_0000856g0150 Nicotiana tabacum HOM05D006219 ORTHO05D007562 1.4e-100 370.9 382 51.8
AT3G04550 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 6.8e-100 368.6 431 48.7
Thhalv10020727m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 1.5e-99 367.5 467 47.8
HPP92_025973 Vanilla planifolia HOM05D006219 ORTHO05D007562 2.0e-99 367.1 405 50.4
Aa31LG5G14970 Aethionema arabicum HOM05D006219 ORTHO05D007562 4.4e-99 365.9 405 49.4
HanXRQChr14g0458931 Helianthus annuus HOM05D006219 ORTHO05D007562 7.5e-99 365.2 461 46.2
Carub.0003s0370 Capsella rubella HOM05D006219 ORTHO05D007562 9.8e-99 364.8 464 47.4
Nitab4.5_0010345g0010 Nicotiana tabacum HOM05D006219 ORTHO05D007562 1.3e-98 364.4 382 50.8
DCAR_002178 Daucus carota HOM05D006219 ORTHO05D007562 3.7e-98 362.8 387 49.9
CARHR078740 Cardamine hirsuta HOM05D006219 ORTHO05D007562 6.4e-98 362.1 459 47.5
AL3G14570 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 4.1e-97 359.4 399 49.6
unitig_748.g8683 Utricularia gibba HOM05D006219 ORTHO05D007562 9.2e-97 358.2 394 48.2
Sp3g03390 Schrenkiella parvula HOM05D006219 ORTHO05D007562 6.0e-96 355.5 470 45.7
SalBow3G3408 Salvia bowleyana HOM05D006219 ORTHO05D007562 1.7e-95 354.0 424 47.6
CDE05G0955 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 2.5e-94 350.1 399 48.9
FAN14G1966 Fragaria x ananassa HOM05D006219 ORTHO05D007562 3.7e-90 336.3 460 45.7
Psat6g143080 Pisum sativum HOM05D006219 ORTHO05D007562 4.9e-90 335.9 346 50.9
FAN14G5007 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.1e-89 334.7 460 45.4
TPR.G10266 Trifolium pratense HOM05D006219 ORTHO05D007562 4.6e-88 329.3 432 47.7
CDE08G1514 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 6.0e-88 328.9 373 47.5
RcHm_v2.0_Chr3g0450031 Rosa chinensis HOM05D006219 ORTHO05D007562 7.8e-88 328.6 330 50.9
ATR0680G103 Amborella trichopoda HOM05D006219 ORTHO05D007562 6.2e-85 318.9 456 44.5
vmacro20002 Vaccinium macrocarpon HOM05D006219 ORTHO05D007562 1.4e-84 317.8 348 51.1
Os10g0445600 Oryza sativa ssp. japonica HOM05D006219 ORTHO05D007562 1.1e-81 308.1 409 45.5
Nn1g02711 Nelumbo nucifera HOM05D006219 ORTHO05D007562 3.4e-75 286.6 281 54.1
MBI18_g37358_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 8.4e-74 282.0 343 47.8
Hma1.2p1_1227F.1_g268570 Hydrangea macrophylla HOM05D006219 ORTHO05D007562 3.9e-71 273.1 340 47.9
Zm00001eb066000 Zea mays HOM05D006219 ORTHO05D007562 5.1e-71 272.7 410 41.5
SGA_v2.0_scaffold210G42065 Striga asiatica HOM05D006219 ORTHO05D007562 1.7e-66 257.7 331 46.5
Glyma.20G222200 Glycine max HOM05D006219 ORTHO05D007562 1.6e-64 251.1 255 52.5
SEGI_10874 Sequoiadendron giganteum HOM05D006219 ORTHO05D007562 2.3e-63 247.3 399 40.4
MBI18_g32212_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 2.5e-62 243.8 420 40.5
MD04G1228600 Malus domestica HOM05D006219 ORTHO05D007562 8.7e-55 218.8 228 49.6
Ciclev10027647m.g Citrus clementina HOM05D006219 ORTHO05D007562 1.1e-54 218.4 165 63.0
Pp3c18_4320 Physcomitrium patens HOM05D006219 ORTHO05D007562 9.3e-49 198.7 387 36.4
Lalb_Chr18g0044051 Lupinus albus HOM05D006219 ORTHO05D007562 1.3e-47 194.9 247 45.7
Mapoly0001s0431 Marchantia polymorpha HOM05D006219 ORTHO05D007562 2.5e-46 190.7 401 32.7
AagrBONN_evm.TU.Sc2ySwM_117.503 Anthoceros agrestis HOM05D006219 ORTHO05D007562 1.6e-45 188.0 396 34.6
Eucgr.H04253 Eucalyptus grandis HOM05D006219 ORTHO05D007562 1.7e-42 177.9 274 43.1
CBR_g29314 Chara braunii HOM05D006219 ORTHO05D007562 6.5e-42 176.0 414 33.8
Cre06.g308450 Chlamydomonas reinhardtii HOM05D006219 ORTHO05D007562 1.8e-23 114.8 415 27.2
Cpa.g.sc162.21 Carica papaya HOM05D000369 ORTHO05D007562 2.5e-17 94.4 108 49.1
AagrBONN_evm.TU.Sc2ySwM_228.3126 Anthoceros agrestis HOM05D006219 ORTHO05D007562 2.3e-15 87.8 180 33.3
SMO137G0122 Selaginella moellendorffii HOM05D006219 ORTHO05D007562 2.6e-14 84.3 178 33.1
MCO04G553 Micromonas commoda HOM05D006219 ORTHO05D007562 2.8e-13 80.9 415 24.8
Mapoly4350s0001 Marchantia polymorpha HOM05D006219 ORTHO05D007562 1.8e-12 78.2 147 32.0
Pp3c16_6440 Physcomitrium patens HOM05D006219 ORTHO05D007562 5.3e-12 76.6 195 30.8
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 7.5e-06 56.2 71 38.0


User provided reference genes

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