Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g191910 Amaranthus hybridus HOM05D007620 ORTHO05D009568 1.9e-70 271.2 134 100.0
AUR62004839 Chenopodium quinoa HOM05D007620 ORTHO05D009568 3.1e-49 200.7 135 74.8
AUR62040929 Chenopodium quinoa HOM05D007620 ORTHO05D009568 1.6e-48 198.4 135 73.3
EL10Ac4g09018 Beta vulgaris HOM05D007620 ORTHO05D009568 2.1e-45 188.0 134 67.9
Hma1.2p1_1512F.1_g287900 Hydrangea macrophylla HOM05D007620 ORTHO05D009568 2.0e-27 128.3 134 50.0
GSVIVG01023503001 Vitis vinifera HOM05D007620 ORTHO05D009568 2.0e-27 128.3 133 48.9
Sc09g0004220 Simmondsia chinensis HOM05D007620 ORTHO05D009568 5.8e-27 126.7 134 50.0
TAR362G1297 Trochodendron aralioides HOM05D007620 ORTHO05D009568 8.3e-26 122.9 134 44.0
Dinv24674 Davidia involucrata HOM05D007620 ORTHO05D009568 1.9e-25 121.7 135 49.6
DCAR_023086 Daucus carota HOM05D007620 ORTHO05D009568 9.2e-25 119.4 134 49.3
Cfa006355 Carpinus fangiana HOM05D007620 ORTHO05D009568 1.0e-23 115.9 136 44.9
Thecc.05G270800 Theobroma cacao HOM05D007620 ORTHO05D009568 1.0e-23 115.9 138 46.4
RcHm_v2.0_Chr3g0449651 Rosa chinensis HOM05D007620 ORTHO05D009568 1.7e-23 115.2 142 44.4
CSS0021218 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 3.9e-23 114.0 140 43.6
CSS0034254 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 3.9e-23 114.0 140 43.6
Haze_04424 Corylus avellana HOM05D007620 ORTHO05D009568 3.9e-23 114.0 136 44.1
Potri.019G019300 Populus trichocarpa HOM05D007620 ORTHO05D009568 3.9e-23 114.0 138 44.9
CSS0013452 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 8.6e-23 112.8 140 42.1
QL03p030456 Quercus lobata HOM05D007620 ORTHO05D009568 1.1e-22 112.5 136 43.4
FAN05G4025 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.9e-22 111.7 138 43.5
FAN05G4826 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.9e-22 111.7 138 43.5
Gohir.D11G257601 Gossypium hirsutum HOM05D007620 ORTHO05D009568 1.9e-22 111.7 140 46.4
Gorai.007G275900 Gossypium raimondii HOM05D007620 ORTHO05D009568 1.9e-22 111.7 140 46.4
Cc02_g08810 Coffea canephora HOM05D007620 ORTHO05D009568 2.5e-22 111.3 133 45.9
Duzib177G1032 Durio zibethinus HOM05D007620 ORTHO05D009568 2.5e-22 111.3 136 44.1
FvH4_6g01920 Fragaria vesca HOM05D007620 ORTHO05D009568 2.5e-22 111.3 138 43.5
FAN02G1272 Fragaria x ananassa HOM05D004964 ORTHO05D005918 2.5e-22 111.3 138 43.5
Manes.08G053900 Manihot esculenta HOM05D007620 ORTHO05D009568 4.3e-22 110.5 134 41.0
Nn1g02811 Nelumbo nucifera HOM05D007620 ORTHO05D009568 5.6e-22 110.2 134 41.0
FAN14G2205 Fragaria x ananassa HOM05D004964 ORTHO05D005918 7.3e-22 109.8 138 42.8
MD04G1230300 Malus domestica HOM05D007620 ORTHO05D009568 7.3e-22 109.8 121 47.9
Potri.013G047000 Populus trichocarpa HOM05D007620 ORTHO05D009568 7.3e-22 109.8 138 42.8
Sabra13G0043000 Salix brachista HOM05D007620 ORTHO05D009568 1.2e-21 109.0 138 43.5
Atru.chr2.986 Acer truncatum HOM05D007620 ORTHO05D009568 3.6e-21 107.5 141 43.3
Lj2C43T7 Lonicera japonica HOM05D007620 ORTHO05D009568 1.4e-20 105.5 135 40.0
Oeu026591.1 Olea europaea HOM05D007620 ORTHO05D009568 3.1e-20 104.4 132 43.2
MD12G1247400 Malus domestica HOM05D007620 ORTHO05D009568 5.2e-20 103.6 119 45.4
PGR004G2089 Punica granatum HOM05D007620 ORTHO05D009568 1.2e-19 102.4 130 43.1
Lalb_Chr06g0168291 Lupinus albus HOM05D007620 ORTHO05D009568 2.6e-19 101.3 138 42.0
Eucgr.H04228 Eucalyptus grandis HOM05D007620 ORTHO05D009568 9.8e-19 99.4 131 42.7
MELO3C010128.2 Cucumis melo HOM05D007620 ORTHO05D009568 1.7e-18 98.6 132 40.2
PSO210G6557 Papaver somniferum HOM05D007620 ORTHO05D009568 1.7e-18 98.6 137 39.4
Lj2C43T8 Lonicera japonica HOM05D007620 ORTHO05D009568 8.3e-18 96.3 136 40.4
Lj1g0023548 Lotus japonicus HOM05D007620 ORTHO05D009568 1.4e-17 95.5 134 38.1
Psat0s1841g0080 Pisum sativum HOM05D007620 ORTHO05D009568 1.9e-17 95.1 138 39.1
Lsat_1_v5_gn_8_24880 Lactuca sativa HOM05D007620 ORTHO05D009568 2.4e-17 94.7 138 34.8
Lj5g0020911 Lotus japonicus HOM05D007620 ORTHO05D009568 2.4e-17 94.7 84 52.4
Peaxi162Scf00528g00227 Petunia axillaris HOM05D007620 ORTHO05D009568 2.4e-17 94.7 132 38.6
CsaV3_1G045110 Cucumis sativus L. HOM05D007620 ORTHO05D009568 5.4e-17 93.6 137 37.2
Ciclev10019446m.g Citrus clementina HOM05D007620 ORTHO05D009568 9.2e-17 92.8 82 53.7
Lalb_Chr21g0311191 Lupinus albus HOM05D007620 ORTHO05D009568 9.2e-17 92.8 139 39.6
Glyma.03G251200 Glycine max HOM05D007620 ORTHO05D009568 3.5e-16 90.9 130 40.0
ClCG03G009720 Citrullus lanatus HOM05D007620 ORTHO05D009568 6.0e-16 90.1 133 39.1
Migut.F00879 Erythranthe guttata HOM05D007620 ORTHO05D009568 1.0e-15 89.4 147 36.7
CDE04G2606 Ceratophyllum demersum HOM05D007620 ORTHO05D009568 1.7e-15 88.6 134 36.6
Medtr1g080110 Medicago truncatula HOM05D007620 ORTHO05D009568 3.0e-15 87.8 80 50.0
Sed0010835 Sechium edule HOM05D007620 ORTHO05D009568 3.0e-15 87.8 75 53.3
Sp3g03610 Schrenkiella parvula HOM05D007620 ORTHO05D009568 5.1e-15 87.0 144 34.0
THA.LOC104801727 Tarenaya hassleriana HOM05D007620 ORTHO05D009568 6.6e-15 86.7 146 34.2
Aqoxy5G00210 Aquilegia oxysepala HOM05D007620 ORTHO05D009568 8.6e-15 86.3 117 41.0
CSS0031974 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 1.5e-14 85.5 134 39.6
CANSAT21G0311 Cannabis sativa HOM05D007620 ORTHO05D009568 3.3e-14 84.3 87 42.5
Psat6g139880 Pisum sativum HOM05D007620 ORTHO05D009568 4.3e-14 84.0 131 35.1
C05p62520 Brassica napus HOM05D007620 ORTHO05D009568 5.6e-14 83.6 134 34.3
BolC5t34907H Brassica oleracea HOM05D007620 ORTHO05D009568 5.6e-14 83.6 134 35.1
Psat0s1841g0040 Pisum sativum HOM05D007620 ORTHO05D009568 5.6e-14 83.6 130 36.9
AL3G14890 Arabidopsis lyrata HOM05D007620 ORTHO05D009568 9.5e-14 82.8 99 41.4
Glyma.20G222800 Glycine max HOM05D007620 ORTHO05D009568 1.2e-13 82.4 143 37.1
AT3G04760 Arabidopsis thaliana HOM05D007620 ORTHO05D009568 1.6e-13 82.0 154 32.5
ATR0736G141 Amborella trichopoda HOM05D007620 ORTHO05D009568 3.6e-13 80.9 77 48.1
Phvul.008G151824 Phaseolus vulgaris HOM05D007620 ORTHO05D009568 3.6e-13 80.9 83 44.6
TPR.G22332 Trifolium pratense HOM05D007620 ORTHO05D009568 3.6e-13 80.9 76 48.7
Aa31LG5G15170 Aethionema arabicum HOM05D007620 ORTHO05D009568 6.2e-13 80.1 81 43.2
Glyma.10G166400 Glycine max HOM05D007620 ORTHO05D009568 8.1e-13 79.7 135 37.0
Gohir.A11G247300 Gossypium hirsutum HOM05D007620 ORTHO05D009568 8.1e-13 79.7 62 54.8
A05p42800 Brassica napus HOM05D007620 ORTHO05D009568 1.1e-12 79.3 72 48.6
BraA05t22972Z Brassica rapa HOM05D007620 ORTHO05D009568 1.1e-12 79.3 72 48.6
Carub.0003s0393 Capsella rubella HOM05D007620 ORTHO05D009568 1.1e-12 79.3 67 49.3
COL.COLO4_15485 Corchorus olitorius HOM05D007620 ORTHO05D009568 1.1e-12 79.3 62 56.5
VMungo0720G2663 Vigna mungo HOM05D007620 ORTHO05D009568 1.8e-12 78.6 69 47.8
MD12G1247200 Malus domestica HOM05D007620 ORTHO05D009568 3.1e-12 77.8 59 57.6
CARHR079010 Cardamine hirsuta HOM05D007620 ORTHO05D009568 4.0e-12 77.4 72 45.8
PGSC0003DMG400011475 Solanum tuberosum HOM05D007620 ORTHO05D009568 8.9e-12 76.3 134 34.3
SGA_v2.0_scaffold13G06478 Striga asiatica HOM05D007620 ORTHO05D009568 2.6e-11 74.7 124 37.1
PGR004G1481 Punica granatum HOM05D007620 ORTHO05D009568 3.7e-10 70.9 91 38.5
Solyc04g010060.2 Solanum lycopersicum HOM05D007620 ORTHO05D009568 3.7e-10 70.9 62 50.0
HPP92_005407 Vanilla planifolia HOM05D007620 ORTHO05D009568 8.3e-10 69.7 95 34.7
Ca_09448_v3 Cicer arietinum L. HOM05D007620 ORTHO05D009568 1.9e-09 68.6 142 31.7
CAN.G358.141 Capsicum annuum HOM05D007620 ORTHO05D009568 2.1e-08 65.1 82 43.9
COL.COLO4_15482 Corchorus olitorius HOM05D007620 ORTHO05D009568 1.0e-07 62.8 42 73.8
Prupe.6G350200 Prunus persica HOM05D007620 ORTHO05D009568 1.1e-06 59.3 40 60.0
ECA233G5729 Erigeron canadensis HOM05D007620 ORTHO05D009568 2.5e-06 58.2 40 57.5


User provided reference genes

Program Settings