Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g191320 Amaranthus hybridus HOM05D005239 ORTHO05D006698 5.9e-250 867.1 440 100.0
AUR62041654 Chenopodium quinoa HOM05D005239 ORTHO05D006698 8.1e-199 697.2 448 80.8
AUR62035533 Chenopodium quinoa HOM05D005239 ORTHO05D006698 2.4e-198 695.7 450 80.0
EL10Ac4g08842 Beta vulgaris HOM05D005239 ORTHO05D006698 1.1e-195 686.8 438 80.6
Sc20g0003020 Simmondsia chinensis HOM05D005239 ORTHO05D006698 2.2e-164 582.8 445 70.3
CSS0007844 Camellia sinensis var. sinensis HOM05D005239 ORTHO05D006698 1.1e-158 563.9 458 67.9
Actinidia21601 Actinidia chinensis HOM05D005239 ORTHO05D006698 1.4e-158 563.5 443 67.7
vmacro21097 Vaccinium macrocarpon HOM05D005239 ORTHO05D006698 1.8e-158 563.1 443 68.6
Hma1.2p1_0601F.1_g187220 Hydrangea macrophylla HOM05D005239 ORTHO05D006698 6.9e-158 561.2 456 65.6
TAR636G2805 Trochodendron aralioides HOM05D005239 ORTHO05D006698 2.2e-156 556.2 459 66.4
Dinv43567 Davidia involucrata HOM05D005239 ORTHO05D006698 2.5e-155 552.7 402 70.9
TAR629G3002 Trochodendron aralioides HOM05D005239 ORTHO05D006698 3.6e-154 548.9 467 66.4
Gohir.A09G201600 Gossypium hirsutum HOM05D005239 ORTHO05D006698 1.8e-153 546.6 449 65.9
Gorai.006G218900 Gossypium raimondii HOM05D005239 ORTHO05D006698 6.7e-153 544.7 449 65.9
CiPaw.13G020400 Carya illinoinensis HOM05D005239 ORTHO05D006698 8.8e-153 544.3 452 65.7
Gohir.D09G195500 Gossypium hirsutum HOM05D005239 ORTHO05D006698 8.8e-153 544.3 449 65.7
Thecc.04G216000 Theobroma cacao HOM05D005239 ORTHO05D006698 1.1e-152 543.9 447 64.4
Ciclev10020370m.g Citrus clementina HOM05D005239 ORTHO05D006698 2.5e-152 542.7 401 69.8
CsaV3_3G010220 Cucumis sativus L. HOM05D005239 ORTHO05D006698 3.3e-152 542.3 456 64.0
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 1.7e-151 540.0 442 66.3
PGR119G0794 Punica granatum HOM05D005239 ORTHO05D006698 2.2e-151 539.7 455 63.5
Dinv44000 Davidia involucrata HOM05D005239 ORTHO05D001060 3.7e-151 538.9 376 72.9
Duzib151G1142 Durio zibethinus HOM05D005239 ORTHO05D006698 4.8e-151 538.5 448 63.8
MELO3C006242.2 Cucumis melo HOM05D005239 ORTHO05D006698 8.2e-151 537.7 452 64.2
Rhsim01G0145300 Rhododendron simsii HOM05D005239 ORTHO05D006698 1.4e-150 537.0 479 62.4
Sabra02G0168400 Salix brachista HOM05D005239 ORTHO05D006698 1.8e-150 536.6 451 65.6
GSVIVG01018386001 Vitis vinifera HOM05D005239 ORTHO05D006698 2.4e-150 536.2 441 65.5
DCAR_029633 Daucus carota HOM05D005239 ORTHO05D006698 5.3e-150 535.0 425 67.3
TWI59G0212 Tripterygium wilfordii HOM05D005239 ORTHO05D006698 5.3e-150 535.0 460 63.5
RcHm_v2.0_Chr6g0273481 Rosa chinensis HOM05D005239 ORTHO05D006698 6.9e-150 534.6 438 66.2
Nitab4.5_0004264g0020 Nicotiana tabacum HOM05D005239 ORTHO05D006698 1.5e-149 533.5 445 65.2
Sed0027364 Sechium edule HOM05D005239 ORTHO05D006698 2.0e-149 533.1 448 62.9
MD08G1235300 Malus domestica HOM05D005239 ORTHO05D006698 2.6e-149 532.7 447 64.7
TWI14G1099 Tripterygium wilfordii HOM05D005239 ORTHO05D006698 2.6e-149 532.7 457 63.9
Prupe.1G571600 Prunus persica HOM05D005239 ORTHO05D006698 4.5e-149 531.9 447 64.7
Potri.002G216100 Populus trichocarpa HOM05D005239 ORTHO05D006698 5.9e-149 531.6 452 65.0
FvH4_2g12720 Fragaria vesca HOM05D005239 ORTHO05D006698 7.7e-149 531.2 441 66.2
Nn6g33642 Nelumbo nucifera HOM05D005239 ORTHO05D006698 2.9e-148 529.3 458 65.3
COL.COLO4_20862 Corchorus olitorius HOM05D005239 ORTHO05D006698 3.8e-148 528.9 449 63.0
ECA234G1231 Erigeron canadensis HOM05D005239 ORTHO05D006698 1.1e-147 527.3 454 63.7
Peaxi162Scf01144g00013 Petunia axillaris HOM05D005239 ORTHO05D006698 1.9e-147 526.6 437 63.8
FAN27G2303 Fragaria x ananassa HOM05D005239 ORTHO05D006698 7.2e-147 524.6 454 64.5
CAN.G1480.7 Capsicum annuum HOM05D005239 ORTHO05D006698 1.6e-146 523.5 377 71.1
QL04p024849 Quercus lobata HOM05D005239 ORTHO05D006698 1.6e-146 523.5 362 74.3
Sed0010493 Sechium edule HOM05D005239 ORTHO05D006698 1.6e-146 523.5 454 63.4
Atru.chr9.1540 Acer truncatum HOM05D005239 ORTHO05D006698 6.1e-146 521.5 438 64.6
FAN15G3107 Fragaria x ananassa HOM05D005239 ORTHO05D006698 6.1e-146 521.5 451 64.1
Sopen01g032450 Solanum pennellii HOM05D005239 ORTHO05D006698 6.1e-146 521.5 452 63.3
Solyc01g080860.3 Solanum lycopersicum HOM05D005239 ORTHO05D006698 1.4e-145 520.4 452 63.1
HanXRQChr17g0562471 Helianthus annuus HOM05D005239 ORTHO05D006698 1.8e-145 520.0 446 63.0
ClCG05G002730 Citrullus lanatus HOM05D005239 ORTHO05D006698 2.3e-145 519.6 454 63.2
CANSAT54G1536 Cannabis sativa HOM05D005239 ORTHO05D006698 8.8e-145 517.7 443 63.2
Cc02_g25930 Coffea canephora HOM05D005239 ORTHO05D006698 1.1e-144 517.3 440 63.6
PGSC0003DMG400001672 Solanum tuberosum HOM05D005239 ORTHO05D006698 7.4e-144 514.6 477 59.5
CDE04G1215 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 2.2e-143 513.1 447 61.3
Eucgr.H02846 Eucalyptus grandis HOM05D005239 ORTHO05D006698 4.8e-143 511.9 466 59.9
Aqoxy3G02472 Aquilegia oxysepala HOM05D005239 ORTHO05D006698 5.3e-142 508.4 456 62.1
THA.LOC104802511 Tarenaya hassleriana HOM05D005239 ORTHO05D006698 5.3e-142 508.4 358 72.3
Phvul.007G006700 Phaseolus vulgaris HOM05D005239 ORTHO05D006698 7.0e-142 508.1 395 66.1
Manes.05G061000 Manihot esculenta HOM05D005239 ORTHO05D006698 1.3e-140 503.8 443 61.4
Lj9A547G68 Lonicera japonica HOM05D005239 ORTHO05D006698 2.9e-140 502.7 337 75.1
Haze_02934 Corylus avellana HOM05D005239 ORTHO05D006698 5.0e-140 501.9 469 61.0
Glyma.20G243400 Glycine max HOM05D005239 ORTHO05D006698 6.5e-140 501.5 426 63.1
Lj5g0010357 Lotus japonicus HOM05D005239 ORTHO05D006698 1.1e-139 500.7 364 69.5
arahy.Tifrunner.gnm1.ann1.X9CQTL Arachis hypogaea HOM05D005239 ORTHO05D006698 1.6e-138 496.9 361 69.3
arahy.Tifrunner.gnm1.ann1.XN1C7B Arachis hypogaea HOM05D005239 ORTHO05D006698 4.7e-138 495.4 355 70.1
THA.LOC104817164 Tarenaya hassleriana HOM05D005239 ORTHO05D006698 4.7e-138 495.4 457 59.5
Lalb_Chr02g0143811 Lupinus albus HOM05D005239 ORTHO05D006698 2.3e-137 493.0 359 70.2
ATR1153G024 Amborella trichopoda HOM05D005239 ORTHO05D006698 3.0e-137 492.7 421 63.2
Oeu002884.1 Olea europaea HOM05D005239 ORTHO05D006698 3.9e-137 492.3 514 56.0
Aa31LG1G26110 Aethionema arabicum HOM05D005239 ORTHO05D006698 5.2e-137 491.9 446 61.2
VMungo0720G0476 Vigna mungo HOM05D005239 ORTHO05D006698 6.7e-137 491.5 427 61.6
Medtr1g116110 Medicago truncatula HOM05D005239 ORTHO05D006698 2.2e-135 486.5 399 64.2
SGA_v2.0_scaffold69G23296 Striga asiatica HOM05D005239 ORTHO05D006698 1.4e-134 483.8 446 60.5
TPR.G10426 Trifolium pratense HOM05D005239 ORTHO05D006698 1.8e-134 483.4 407 62.9
unitig_26.g9718 Utricularia gibba HOM05D005239 ORTHO05D006698 5.9e-133 478.4 453 59.8
HPP92_001886 Vanilla planifolia HOM05D005239 ORTHO05D006698 5.9e-133 478.4 374 66.8
BcaB06g29384 Brassica carinata HOM05D005239 ORTHO05D006698 7.7e-133 478.0 352 68.2
SGA_v2.0_scaffold52G19274 Striga asiatica HOM05D005239 ORTHO05D006698 7.7e-133 478.0 445 60.9
PSO302G0170 Papaver somniferum HOM05D005239 ORTHO05D006698 1.3e-132 477.2 355 67.9
BolC4t28610H Brassica oleracea HOM05D005239 ORTHO05D006698 3.8e-132 475.7 440 59.5
Ca_11344_v3 Cicer arietinum L. HOM05D005239 ORTHO05D006698 3.8e-132 475.7 409 61.9
BcaC02g07098 Brassica carinata HOM05D005239 ORTHO05D006698 1.1e-131 474.2 440 59.5
Os01g0527700 Oryza sativa ssp. japonica HOM05D005239 ORTHO05D006698 1.1e-131 474.2 350 67.4
PSO170G2576 Papaver somniferum HOM05D005239 ORTHO05D006698 1.5e-131 473.8 472 57.0
Lsat_1_v5_gn_4_39040 Lactuca sativa HOM05D005239 ORTHO05D006698 2.5e-131 473.0 447 60.2
BraA04t18797Z Brassica rapa HOM05D005239 ORTHO05D006698 5.5e-131 471.9 440 58.9
Thhalv10001456m.g Eutrema salsugineum HOM05D005239 ORTHO05D006698 5.5e-131 471.9 384 64.3
AT2G44520 Arabidopsis thaliana HOM05D005239 ORTHO05D006698 7.2e-131 471.5 361 66.8
Carub.0004s2708 Capsella rubella HOM05D005239 ORTHO05D006698 1.6e-130 470.3 361 67.0
Zm00001eb402310 Zea mays HOM05D005239 ORTHO05D006698 3.6e-130 469.2 350 67.1
Sp4g26610 Schrenkiella parvula HOM05D005239 ORTHO05D006698 2.3e-129 466.5 439 59.0
Psat6g232360 Pisum sativum HOM05D005239 ORTHO05D006698 4.0e-129 465.7 410 61.2
AL4G43540 Arabidopsis lyrata HOM05D005239 ORTHO05D006698 6.8e-129 464.9 451 57.2
C04p05410 Brassica napus HOM05D005239 ORTHO05D006698 1.7e-127 460.3 348 67.2
BolC4t22181H Brassica oleracea HOM05D005239 ORTHO05D006698 1.7e-127 460.3 348 67.2
Nitab4.5_0001476g0120 Nicotiana tabacum HOM05D005239 ORTHO05D006698 2.5e-123 446.4 445 56.6
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 3.2e-123 446.0 333 68.5
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 1.2e-122 444.1 333 68.2
Zm00001eb005400 Zea mays HOM05D005239 ORTHO05D006698 1.4e-121 440.7 334 67.1
BcaNung07053 Brassica carinata HOM05D005239 ORTHO05D006698 6.8e-121 438.3 356 63.8
BcaC02g12301 Brassica carinata HOM05D005239 ORTHO05D006698 1.7e-119 433.7 422 56.4
Duzib212G0896 Durio zibethinus HOM05D005239 ORTHO05D006698 2.0e-117 426.8 445 54.6
MD15G1426600 Malus domestica HOM05D005239 ORTHO05D006698 1.9e-115 420.2 304 70.1
SEGI_24425 Sequoiadendron giganteum HOM05D005239 ORTHO05D006698 6.8e-113 411.8 303 67.0
Actinidia33289 Actinidia chinensis HOM05D005239 ORTHO05D006698 8.9e-113 411.4 317 68.5
AagrBONN_evm.TU.Sc2ySwM_369.187 Anthoceros agrestis HOM05D005239 ORTHO05D006698 2.8e-111 406.4 358 57.3
Cpa.g.sc20.28 Carica papaya HOM05D005239 ORTHO05D006698 1.1e-107 394.4 247 78.5
SMO364G0841 Selaginella moellendorffii HOM05D005239 ORTHO05D006698 9.8e-104 381.3 349 55.9
Mapoly0029s0153 Marchantia polymorpha HOM05D005239 ORTHO05D006698 9.2e-102 374.8 367 53.4
Migut.B01467 Erythranthe guttata HOM05D005239 ORTHO05D006698 1.9e-99 367.1 321 62.9
Hma1.2p1_0601F.1_g187230 Hydrangea macrophylla HOM05D005239 ORTHO05D006698 1.1e-97 361.3 295 65.8
CBR_g3821 Chara braunii HOM05D005239 ORTHO05D006698 7.8e-93 345.1 324 55.9
CDE12G0888 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 4.7e-90 335.9 247 67.6
Pp3c14_19200 Physcomitrium patens HOM05D005239 ORTHO05D006698 4.4e-88 329.3 261 61.7
CARHR139710 Cardamine hirsuta HOM05D005239 ORTHO05D006698 2.4e-86 323.6 245 66.5
CAN.G74.42 Capsicum annuum HOM05D005239 ORTHO05D006698 1.7e-84 317.4 286 59.1
PSO357G0304 Papaver somniferum HOM05D005239 ORTHO05D006698 4.3e-83 312.8 201 77.1
Cre12.g516350 Chlamydomonas reinhardtii HOM05D005239 ORTHO05D006698 4.3e-75 286.2 278 53.6
MCO03G363 Micromonas commoda HOM05D005239 ORTHO05D006698 2.1e-69 267.3 283 51.6
Oeu037395.1 Olea europaea HOM05D005239 ORTHO05D006698 2.7e-69 266.9 355 48.5
PRCOL_00000009 Prasinoderma coloniale HOM05D005239 ORTHO05D006698 3.0e-68 263.5 346 42.8
BraA05t19443Z Brassica rapa HOM05D005239 ORTHO05D006698 9.6e-67 258.5 288 50.7
A05p04670 Brassica napus HOM05D005239 ORTHO05D006698 5.8e-64 249.2 284 52.5
Aqoxy5G02001 Aquilegia oxysepala HOM05D005239 ORTHO05D006698 7.6e-64 248.8 209 63.6
MD15G1426900 Malus domestica HOM05D005239 ORTHO05D006698 1.7e-63 247.7 188 64.9
BcaB02g08828 Brassica carinata HOM05D005239 ORTHO05D006698 3.5e-53 213.4 241 51.5
SHI13675 Sapria himalayana HOM05D005239 ORTHO05D006698 2.0e-48 197.6 205 57.1
FAN24G3432 Fragaria x ananassa HOM05D005239 ORTHO05D006698 1.2e-45 188.3 198 60.1
Cfa027222 Carpinus fangiana HOM05D005239 ORTHO05D006698 8.8e-36 155.6 321 35.8
PGR004G1759 Punica granatum HOM05D005239 ORTHO05D006698 1.1e-30 138.7 121 62.0
Glyma.10G293300 Glycine max HOM05D005239 ORTHO05D006698 4.4e-27 126.7 76 76.3
PSO081G0040 Papaver somniferum HOM05D005239 ORTHO05D006698 7.4e-27 125.9 83 77.1
TPR.G37315 Trifolium pratense HOM05D005239 ORTHO05D006698 3.1e-25 120.6 83 68.7
RcHm_v2.0_Chr6g0271171 Rosa chinensis HOM05D005239 ORTHO05D006698 3.8e-23 113.6 72 76.4
CDE12G0056 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 2.1e-21 107.8 60 81.7
RcHm_v2.0_Chr7g0200821 Rosa chinensis HOM05D005239 ORTHO05D006698 6.1e-21 106.3 72 72.2
SEGI_27712 Sequoiadendron giganteum HOM05D005239 ORTHO05D006698 3.2e-14 84.0 57 71.9
Cc02_g25970 Coffea canephora HOM05D005239 ORTHO05D006698 7.2e-14 82.8 100 48.0
SHI13676 Sapria himalayana HOM05D005239 ORTHO05D006698 1.2e-11 75.5 85 55.3


User provided reference genes

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