Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g191000 Amaranthus hybridus HOM05D002617 ORTHO05D009035 3.9e-294 1014.2 574 100.0
Ah.06g191010 Amaranthus hybridus HOM05D002617 ORTHO05D009035 9.6e-277 956.4 553 98.6
AUR62008950 Chenopodium quinoa HOM05D002617 ORTHO05D009035 1.2e-197 693.7 587 65.4
EL10Ac2g04621 Beta vulgaris HOM05D002617 ORTHO05D009035 1.1e-190 670.6 574 71.4
TAR629G1601 Trochodendron aralioides HOM05D002617 ORTHO05D009035 1.3e-164 583.9 492 61.4
QL02p053130 Quercus lobata HOM05D002617 ORTHO05D009035 6.7e-161 571.6 492 59.8
Sc11g0008110 Simmondsia chinensis HOM05D002617 ORTHO05D009035 4.3e-160 568.9 493 59.8
GSVIVG01036455001 Vitis vinifera HOM05D002617 ORTHO05D009035 1.6e-159 567.0 483 60.5
Dinv33921 Davidia involucrata HOM05D002617 ORTHO05D009035 2.1e-159 566.6 492 59.1
Prupe.3G241200 Prunus persica HOM05D002617 ORTHO05D009035 6.3e-159 565.1 493 58.0
FvH4_6g45490 Fragaria vesca HOM05D002617 ORTHO05D009035 2.4e-158 563.1 494 57.5
Cfa007960 Carpinus fangiana HOM05D002617 ORTHO05D009035 2.6e-157 559.7 493 58.8
Hma1.2p1_0136F.1_g062000 Hydrangea macrophylla HOM05D002617 ORTHO05D009035 7.6e-157 558.1 492 58.5
FAN05G4565 Fragaria x ananassa HOM05D002617 ORTHO05D009035 2.9e-156 556.2 494 56.9
CiPaw.09G147400 Carya illinoinensis HOM05D002617 ORTHO05D009035 6.5e-156 555.1 492 57.5
Nn3g17671 Nelumbo nucifera HOM05D002617 ORTHO05D009035 2.5e-155 553.1 492 57.7
RcHm_v2.0_Chr2g0163431 Rosa chinensis HOM05D002617 ORTHO05D009035 6.7e-153 545.0 511 55.2
Peaxi162Scf00479g00211 Petunia axillaris HOM05D002617 ORTHO05D009035 5.7e-152 542.0 481 56.3
Ciclev10013582m.g Citrus clementina HOM05D002617 ORTHO05D009035 2.2e-151 540.0 475 57.1
Rhsim10G0064400 Rhododendron simsii HOM05D002617 ORTHO05D009035 2.6e-149 533.1 492 57.3
TWI53G1449 Tripterygium wilfordii HOM05D002617 ORTHO05D009035 1.3e-148 530.8 492 55.1
Thecc.04G140600 Theobroma cacao HOM05D002617 ORTHO05D009035 5.0e-148 528.9 492 54.7
Aqoxy3G00430 Aquilegia oxysepala HOM05D002617 ORTHO05D009035 2.5e-147 526.6 497 55.1
Cfa007963 Carpinus fangiana HOM05D002617 ORTHO05D009035 4.6e-146 522.3 509 55.6
Glyma.13G047800 Glycine max HOM05D002617 ORTHO05D009035 7.9e-146 521.5 492 54.3
Psat1g062120 Pisum sativum HOM05D002617 ORTHO05D009035 2.3e-145 520.0 492 53.9
AUR62014551 Chenopodium quinoa HOM05D002617 ORTHO05D009035 1.5e-144 517.3 414 67.6
Medtr6g016985 Medicago truncatula HOM05D002617 ORTHO05D009035 2.0e-144 516.9 492 54.1
FAN14G1977 Fragaria x ananassa HOM05D002617 ORTHO05D009035 3.3e-144 516.2 527 52.6
Phvul.005G010600 Phaseolus vulgaris HOM05D002617 ORTHO05D009035 7.4e-144 515.0 493 54.0
Cc07_g05000 Coffea canephora HOM05D002617 ORTHO05D009035 1.7e-143 513.8 456 58.1
Sabra04G0077100 Salix brachista HOM05D002617 ORTHO05D009035 1.7e-143 513.8 488 55.1
Lj2g0019105 Lotus japonicus HOM05D002617 ORTHO05D009035 8.2e-143 511.5 492 53.5
Actinidia36305 Actinidia chinensis HOM05D002617 ORTHO05D009035 2.4e-142 510.0 494 54.7
Oeu043862.1 Olea europaea HOM05D002617 ORTHO05D009035 3.1e-142 509.6 436 59.6
DCAR_011250 Daucus carota HOM05D002617 ORTHO05D009035 5.3e-142 508.8 486 53.5
CSS0020455 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D009035 2.0e-141 506.9 483 55.5
Ca_14082_v3 Cicer arietinum L. HOM05D002617 ORTHO05D009035 7.7e-141 505.0 474 54.6
PGR042G2862 Punica granatum HOM05D002617 ORTHO05D009035 1.3e-140 504.2 494 53.2
Manes.02G065900 Manihot esculenta HOM05D002617 ORTHO05D009035 7.2e-139 498.4 417 61.4
COL.COLO4_16208 Corchorus olitorius HOM05D002617 ORTHO05D009035 1.2e-138 497.7 496 53.2
HPP92_020267 Vanilla planifolia HOM05D002617 ORTHO05D009035 1.2e-138 497.7 492 52.0
Duzib151G0578 Durio zibethinus HOM05D002617 ORTHO05D009035 1.1e-136 491.1 492 52.6
Gohir.A10G140200 Gossypium hirsutum HOM05D002617 ORTHO05D009035 7.4e-136 488.4 493 54.4
PSO478G1567 Papaver somniferum HOM05D002617 ORTHO05D009035 1.8e-134 483.8 486 52.3
PSO832G3224 Papaver somniferum HOM05D002617 ORTHO05D009035 9.1e-134 481.5 486 52.3
Sopen03g009540 Solanum pennellii HOM05D002617 ORTHO05D009035 1.6e-133 480.7 481 53.6
Gohir.D10G126600 Gossypium hirsutum HOM05D002617 ORTHO05D009035 2.6e-133 479.9 493 52.7
Nitab4.5_0000612g0170 Nicotiana tabacum HOM05D002617 ORTHO05D009035 2.2e-132 476.9 521 50.5
Migut.H00535 Erythranthe guttata HOM05D002617 ORTHO05D009035 3.8e-132 476.1 485 52.8
Lj4A130G15 Lonicera japonica HOM05D002617 ORTHO05D009035 5.5e-131 472.2 503 52.5
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 1.5e-128 464.2 485 52.4
arahy.Tifrunner.gnm1.ann1.7SH6PF Arachis hypogaea HOM05D002617 ORTHO05D009035 4.4e-128 462.6 481 50.3
MBI16_g23736_MAGBIO Magnolia biondii HOM05D002617 ORTHO05D009035 5.7e-128 462.2 475 50.7
Potri.004G104500 Populus trichocarpa HOM05D002617 ORTHO05D009035 3.5e-125 453.0 405 57.8
Gorai.011G139500 Gossypium raimondii HOM05D002617 ORTHO05D009035 1.3e-124 451.1 493 50.7
Nitab4.5_0003461g0060 Nicotiana tabacum HOM05D002617 ORTHO05D009035 5.5e-123 445.7 512 48.6
Haze_14108 Corylus avellana HOM05D002617 ORTHO05D009035 3.0e-121 439.9 485 50.1
arahy.Tifrunner.gnm1.ann1.37DWZ9 Arachis hypogaea HOM05D002617 ORTHO05D009035 6.8e-121 438.7 492 47.2
Glyma.14G157500 Glycine max HOM05D002617 ORTHO05D009035 8.8e-121 438.3 403 55.1
Lsat_1_v5_gn_2_86600 Lactuca sativa HOM05D002617 ORTHO05D009035 2.0e-120 437.2 528 45.6
TPR.G9672 Trifolium pratense HOM05D002617 ORTHO05D009035 6.3e-119 432.2 395 54.4
CiPaw.09G147200 Carya illinoinensis HOM05D002617 ORTHO05D009035 8.3e-119 431.8 415 54.0
MD09G1082500 Malus domestica HOM05D002617 ORTHO05D009035 4.1e-118 429.5 407 53.8
PSO013G0088 Papaver somniferum HOM05D002617 ORTHO05D009035 7.0e-118 428.7 435 54.0
AT5G16020 Arabidopsis thaliana HOM05D002617 ORTHO05D009035 2.7e-117 426.8 492 46.3
Eucgr.J01458 Eucalyptus grandis HOM05D002617 ORTHO05D009035 1.7e-116 424.1 509 46.6
A10p23040 Brassica napus HOM05D002617 ORTHO05D009035 2.9e-116 423.3 491 47.0
BraA10t44373Z Brassica rapa HOM05D002617 ORTHO05D009035 2.9e-116 423.3 491 47.0
ECA238G3370 Erigeron canadensis HOM05D002617 ORTHO05D009035 1.9e-115 420.6 468 48.5
SHI30168 Sapria himalayana HOM05D002617 ORTHO05D009035 1.9e-115 420.6 468 47.9
AL6G26890 Arabidopsis lyrata HOM05D002617 ORTHO05D009035 5.5e-115 419.1 490 45.5
Carub.0006s1420 Capsella rubella HOM05D002617 ORTHO05D009035 7.2e-115 418.7 489 44.6
CARHR197300 Cardamine hirsuta HOM05D002617 ORTHO05D009035 3.6e-114 416.4 490 45.3
Thhalv10015867m.g Eutrema salsugineum HOM05D002617 ORTHO05D009035 8.0e-114 415.2 492 45.9
BcaB08g36879 Brassica carinata HOM05D002617 ORTHO05D009035 6.8e-113 412.1 493 45.0
C09p61030 Brassica napus HOM05D002617 ORTHO05D009035 6.8e-113 412.1 491 46.4
Zm00001eb161540 Zea mays HOM05D002617 ORTHO05D009035 2.6e-112 410.2 496 43.8
BolC9t58948H Brassica oleracea HOM05D002617 ORTHO05D009035 3.4e-112 409.8 491 46.2
HanXRQChr14g0452391 Helianthus annuus HOM05D002617 ORTHO05D009035 4.9e-111 406.0 478 45.6
BcaC04g18915 Brassica carinata HOM05D002617 ORTHO05D009035 8.3e-111 405.2 491 45.6
Cpa.g.sc179.39 Carica papaya HOM05D002617 ORTHO05D009035 3.5e-109 399.8 490 47.3
ATR0820G227 Amborella trichopoda HOM05D002617 ORTHO05D009035 1.7e-108 397.5 494 42.7
Solyc03g045080.3 Solanum lycopersicum HOM05D002617 ORTHO05D009035 3.8e-108 396.4 347 58.8
FAN09G3897 Fragaria x ananassa HOM05D002617 ORTHO05D009035 1.2e-106 391.3 527 44.4
Atru.chr8.789 Acer truncatum HOM05D002617 ORTHO05D009035 1.4e-105 387.9 329 56.8
CANSAT56G0222 Cannabis sativa HOM05D002617 ORTHO05D009035 1.2e-104 384.8 333 59.2
THA.LOC104827464 Tarenaya hassleriana HOM05D002617 ORTHO05D009035 5.7e-104 382.5 474 44.5
vmacro05580 Vaccinium macrocarpon HOM05D002617 ORTHO05D009035 9.8e-104 381.7 317 59.6
PGSC0003DMG400018767 Solanum tuberosum HOM05D002617 ORTHO05D009035 5.6e-99 365.9 362 54.4
Aa31LG11G13590 Aethionema arabicum HOM05D002617 ORTHO05D009035 7.3e-99 365.5 468 43.2
Lalb_Chr10g0092311 Lupinus albus HOM05D002617 ORTHO05D009035 7.3e-99 365.5 332 53.9
Os01g0605400 Oryza sativa ssp. japonica HOM05D002617 ORTHO05D009035 4.9e-95 352.8 473 41.6
SalBow1G3878 Salvia bowleyana HOM05D002617 ORTHO05D009035 1.9e-94 350.9 351 54.1
unitig_899.g15127 Utricularia gibba HOM05D002617 ORTHO05D009035 3.5e-93 346.7 497 42.9
CAN.G153.15 Capsicum annuum HOM05D002617 ORTHO05D009035 2.3e-92 344.0 399 49.4
CDE06G1275 Ceratophyllum demersum HOM05D002617 ORTHO05D009035 1.9e-75 287.7 325 46.8
FAN02G3888 Fragaria x ananassa HOM05D002617 ORTHO05D009035 1.9e-75 287.7 233 57.9
FAN02G3008 Fragaria x ananassa HOM05D002617 ORTHO05D009035 5.1e-60 236.5 279 49.8
CANSAT56G3033 Cannabis sativa HOM05D002617 ORTHO05D009035 3.8e-55 220.3 276 48.9
Actinidia18118 Actinidia chinensis HOM05D002617 ORTHO05D009035 8.7e-52 209.1 193 52.8
CANSAT56G4171 Cannabis sativa HOM05D002617 ORTHO05D009035 1.5e-51 208.4 184 57.6
CiPaw.09G170800 Carya illinoinensis HOM05D002617 ORTHO05D009035 2.6e-40 171.0 177 53.1
vmacro05579 Vaccinium macrocarpon HOM05D002617 ORTHO05D009035 1.3e-39 168.7 144 62.5
Haze_14109 Corylus avellana HOM05D002617 ORTHO05D006076 5.5e-38 163.3 160 58.8
Haze_14111 Corylus avellana HOM05D002617 ORTHO05D006076 5.1e-36 156.8 140 63.6
arahy.Tifrunner.gnm1.ann1.3A0B2Z Arachis hypogaea HOM05D002617 ORTHO05D009035 4.1e-33 147.1 146 52.7
MSTRG.23827 Avicennia marina HOM05D002617 ORTHO05D009035 3.0e-28 131.0 145 51.7
SMO116G0487 Selaginella moellendorffii HOM05D002617 ORTHO05D009035 3.3e-19 100.9 203 32.5
Lalb_Chr10g0092331 Lupinus albus HOM05D002617 ORTHO05D009035 5.5e-14 83.6 93 51.6
Nn4g26093 Nelumbo nucifera HOM05D001650 ORTHO05D001592 9.4e-14 82.8 92 50.0
TAR705G0001 Trochodendron aralioides HOM05D001309 ORTHO05D000385 7.5e-11 73.2 59 61.0
Lalb_Chr10g0092321 Lupinus albus HOM05D002617 ORTHO05D009035 5.3e-09 67.0 48 66.7
TAR629G1810 Trochodendron aralioides HOM05D004423 ORTHO05D005464 2.0e-08 65.1 42 71.4


User provided reference genes

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