Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g190970 Amaranthus hybridus HOM05D004722 ORTHO05D005453 6.6e-42 173.7 94 100.0
EL10Ac4g09615 Beta vulgaris HOM05D004722 ORTHO05D005453 7.6e-30 133.7 88 79.5
EL10Ac4g09614 Beta vulgaris HOM05D004722 ORTHO05D005453 1.8e-23 112.5 87 70.1
EL10Ac4g09616 Beta vulgaris HOM05D004722 ORTHO05D005453 3.1e-23 111.7 89 65.2
COL.COLO4_10444 Corchorus olitorius HOM05D004722 ORTHO05D005453 3.8e-13 78.2 90 54.4
RhsimUnG0154700 Rhododendron simsii HOM05D004722 ORTHO05D005453 5.0e-13 77.8 74 62.2
Eucgr.B03635 Eucalyptus grandis HOM05D004722 ORTHO05D005453 1.1e-12 76.6 67 65.7
Rhsim13G0228000 Rhododendron simsii HOM05D004722 ORTHO05D005453 1.1e-12 76.6 74 60.8
Nn2g15722 Nelumbo nucifera HOM05D004722 ORTHO05D005453 1.4e-12 76.3 87 52.9
Duzib114G0602 Durio zibethinus HOM05D004722 ORTHO05D005453 4.2e-12 74.7 85 56.5
Eucgr.B02611 Eucalyptus grandis HOM05D004722 ORTHO05D005453 5.5e-12 74.3 87 51.7
Thecc.10G172000 Theobroma cacao HOM05D004722 ORTHO05D005453 9.4e-12 73.6 77 59.7
TWI60G0560 Tripterygium wilfordii HOM05D004722 ORTHO05D005453 1.4e-10 69.7 84 46.4
PGR102G1407 Punica granatum HOM05D004722 ORTHO05D005453 2.3e-10 68.9 72 54.2
RcHm_v2.0_Chr5g0081201 Rosa chinensis HOM05D004722 ORTHO05D005453 2.3e-10 68.9 75 57.3
COL.COLO4_35454 Corchorus olitorius HOM05D004722 ORTHO05D005453 3.0e-10 68.6 74 59.5
Gohir.A13G005400 Gossypium hirsutum HOM05D004722 ORTHO05D005453 3.0e-10 68.6 70 58.6
Gorai.013G005600 Gossypium raimondii HOM05D004722 ORTHO05D005453 3.9e-10 68.2 70 60.0
CSS0030536 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 5.1e-10 67.8 67 56.7
CiPaw.13G035000 Carya illinoinensis HOM05D004722 ORTHO05D005453 5.1e-10 67.8 65 55.4
Sc06g0004360 Simmondsia chinensis HOM05D004722 ORTHO05D005453 5.1e-10 67.8 67 58.2
TAR633G0462 Trochodendron aralioides HOM05D004722 ORTHO05D005453 5.1e-10 67.8 82 51.2
Gohir.D13G005100 Gossypium hirsutum HOM05D004722 ORTHO05D005453 6.7e-10 67.4 61 65.6
FvH4_3g44500 Fragaria vesca HOM05D004722 ORTHO05D005453 8.8e-10 67.0 75 56.0
FAN11G3093 Fragaria x ananassa HOM05D004722 ORTHO05D005453 8.8e-10 67.0 75 56.0
Psat1g129080 Pisum sativum HOM05D004722 ORTHO05D005453 8.8e-10 67.0 77 57.1
CSS0019909 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.1e-09 66.6 69 56.5
Lsat_1_v5_gn_1_68380 Lactuca sativa HOM05D004722 ORTHO05D005453 1.1e-09 66.6 90 42.2
Potri.009G024300 Populus trichocarpa HOM05D004722 ORTHO05D005453 1.1e-09 66.6 90 46.7
TPR.G16145 Trifolium pratense HOM05D004722 ORTHO05D005453 1.5e-09 66.2 81 51.9
PSO339G1234 Papaver somniferum HOM05D004722 ORTHO05D005453 2.0e-09 65.9 74 51.4
Gohir.D04G014200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 2.5e-09 65.5 86 53.5
Gorai.012G016800 Gossypium raimondii HOM05D004722 ORTHO05D005453 2.5e-09 65.5 86 53.5
Ciclev10017204m.g Citrus clementina HOM05D004722 ORTHO05D005453 3.3e-09 65.1 66 59.1
Potri.001G010600 Populus trichocarpa HOM05D004722 ORTHO05D005453 3.3e-09 65.1 66 57.6
GSVIVG01025254001 Vitis vinifera HOM05D004722 ORTHO05D005453 3.3e-09 65.1 88 50.0
CSS0018564 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 4.3e-09 64.7 90 44.4
ClCG10G012700 Citrullus lanatus HOM05D004722 ORTHO05D005453 4.3e-09 64.7 93 44.1
Thecc.09G215900 Theobroma cacao HOM05D004722 ORTHO05D005453 4.3e-09 64.7 77 57.1
Aqoxy2G00098 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 5.7e-09 64.3 70 51.4
Aqoxy3G01856 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 5.7e-09 64.3 70 51.4
CSS0019299 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 5.7e-09 64.3 90 44.4
Medtr2g061780 Medicago truncatula HOM05D004722 ORTHO05D005453 5.7e-09 64.3 81 50.6
Phvul.005G042200 Phaseolus vulgaris HOM05D004722 ORTHO05D005453 7.4e-09 63.9 67 59.7
HanXRQChr11g0344951 Helianthus annuus HOM05D004722 ORTHO05D005453 9.7e-09 63.5 66 56.1
MD02G1319500 Malus domestica HOM05D004722 ORTHO05D005453 9.7e-09 63.5 69 55.1
Prupe.2G002500 Prunus persica HOM05D004722 ORTHO05D005453 9.7e-09 63.5 69 53.6
Sabra09G0015700 Salix brachista HOM05D004722 ORTHO05D005453 9.7e-09 63.5 64 56.2
Lalb_Chr25g0283671 Lupinus albus HOM05D004722 ORTHO05D005453 1.3e-08 63.2 67 58.2
Potri.003G215300 Populus trichocarpa HOM05D004722 ORTHO05D005453 1.3e-08 63.2 65 58.5
PGR119G0776 Punica granatum HOM05D004722 ORTHO05D005453 1.3e-08 63.2 82 51.2
Sed0000285 Sechium edule HOM05D004722 ORTHO05D005453 1.3e-08 63.2 64 54.7
TAR636G0988 Trochodendron aralioides HOM05D004722 ORTHO05D005453 1.3e-08 63.2 70 52.9
TAR636G1609 Trochodendron aralioides HOM05D004722 ORTHO05D005453 1.3e-08 63.2 70 52.9
Aa31LG1G19080 Aethionema arabicum HOM05D004722 ORTHO05D005453 1.7e-08 62.8 77 48.1
MELO3C023928.2 Cucumis melo HOM05D004722 ORTHO05D005453 1.7e-08 62.8 69 53.6
HanXRQChr01g0021201 Helianthus annuus HOM05D004722 ORTHO05D005453 1.7e-08 62.8 70 55.7
arahy.Tifrunner.gnm1.ann1.3B9L35 Arachis hypogaea HOM05D004722 ORTHO05D005453 2.2e-08 62.4 73 54.8
CSS0017159 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 2.2e-08 62.4 90 43.3
Ca_03203_v3 Cicer arietinum L. HOM05D004722 ORTHO05D005453 2.2e-08 62.4 73 54.8
HanXRQChr15g0480671 Helianthus annuus HOM05D004722 ORTHO05D005453 2.8e-08 62.0 71 53.5
Hma1.2p1_1373F.1_g278710 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 2.8e-08 62.0 72 51.4
Hma1.2p1_2663F.1_g326415 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 2.8e-08 62.0 72 51.4
FAN01G1424 Fragaria x ananassa HOM05D000082 ORTHO05D005453 3.7e-08 61.6 78 48.7
Sed0020970 Sechium edule HOM05D004722 ORTHO05D005453 3.7e-08 61.6 51 66.7
Glyma.15G268200 Glycine max HOM05D004722 ORTHO05D005453 4.8e-08 61.2 73 54.8
Hma1.2p1_0541F.1_g174840 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 4.8e-08 61.2 78 43.6
Lj3g0007026 Lotus japonicus HOM05D004722 ORTHO05D005453 4.8e-08 61.2 62 59.7
MD00G1055400 Malus domestica HOM05D004722 ORTHO05D005453 8.2e-08 60.5 63 58.7
RcHm_v2.0_Chr1g0313231 Rosa chinensis HOM05D004722 ORTHO05D005453 8.2e-08 60.5 92 43.5
Atru.chr3.2176 Acer truncatum HOM05D004722 ORTHO05D005453 1.1e-07 60.1 58 62.1
Gohir.A05G401550 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.1e-07 60.1 69 58.0
ECA236G3701 Erigeron canadensis HOM05D004722 ORTHO05D005453 1.4e-07 59.7 60 56.7
MD11G1015000 Malus domestica HOM05D004722 ORTHO05D005453 1.4e-07 59.7 76 51.3
Ciclev10033110m.g Citrus clementina HOM05D004722 ORTHO05D005453 1.8e-07 59.3 65 53.8
Glyma.08G158100 Glycine max HOM05D004722 ORTHO05D005453 1.8e-07 59.3 67 53.7
Actinidia05843 Actinidia chinensis HOM05D004722 ORTHO05D005453 2.4e-07 58.9 63 54.0
CAN.G129.50 Capsicum annuum HOM05D004722 ORTHO05D005453 2.4e-07 58.9 62 56.5
DCAR_027044 Daucus carota HOM05D004722 ORTHO05D005453 2.4e-07 58.9 61 57.4
Nitab4.5_0000468g0090 Nicotiana tabacum HOM05D004722 ORTHO05D005453 2.4e-07 58.9 78 47.4
Atru.chr11.2706 Acer truncatum HOM05D004722 ORTHO05D005453 3.1e-07 58.5 70 51.4
Cfa010708 Carpinus fangiana HOM05D004722 ORTHO05D005453 3.1e-07 58.5 81 48.1
DCAR_029591 Daucus carota HOM05D004722 ORTHO05D005453 3.1e-07 58.5 87 44.8
Lalb_Chr01g0014951 Lupinus albus HOM05D004722 ORTHO05D005453 3.1e-07 58.5 78 47.4
PGSC0003DMG400028988 Solanum tuberosum HOM05D004722 ORTHO05D005453 3.1e-07 58.5 80 46.2
vmacro13608 Vaccinium macrocarpon HOM05D004722 ORTHO05D005453 3.1e-07 58.5 77 49.4
DCAR_027045 Daucus carota HOM05D004722 ORTHO05D005453 4.1e-07 58.2 72 50.0
Atru.chr3.2177 Acer truncatum HOM05D004722 ORTHO05D005453 5.3e-07 57.8 45 66.7
MD03G1011900 Malus domestica HOM05D004722 ORTHO05D005453 5.3e-07 57.8 62 58.1
Manes.10G152300 Manihot esculenta HOM05D004722 ORTHO05D005453 5.3e-07 57.8 69 50.7
Prupe.6G012500 Prunus persica HOM05D004722 ORTHO05D005453 9.1e-07 57.0 71 52.1
Sabra16G0138300 Salix brachista HOM05D004722 ORTHO05D005453 9.1e-07 57.0 90 42.2
BcaB02g06840 Brassica carinata HOM05D004722 ORTHO05D005453 1.2e-06 56.6 77 45.5
Zm00001eb193270 Zea mays HOM05D004722 ORTHO05D005453 1.2e-06 56.6 62 54.8
Cpa.g.sc189.2 Carica papaya HOM05D004722 ORTHO05D005453 1.5e-06 56.2 64 53.1
Peaxi162Scf00245g00096 Petunia axillaris HOM05D004722 ORTHO05D005453 1.5e-06 56.2 62 51.6
CARHR005060 Cardamine hirsuta HOM05D004722 ORTHO05D005453 2.6e-06 55.5 63 49.2
Haze_03270 Corylus avellana HOM05D004722 ORTHO05D005453 2.6e-06 55.5 81 45.7
Cc02_g26900 Coffea canephora HOM05D004722 ORTHO05D005453 3.4e-06 55.1 62 53.2
Oeu034890.1 Olea europaea HOM05D004722 ORTHO05D005453 3.4e-06 55.1 66 50.0
Cc02_g26920 Coffea canephora HOM05D004722 ORTHO05D005453 4.5e-06 54.7 62 50.0
DCAR_023306 Daucus carota HOM05D004722 ORTHO05D005453 5.9e-06 54.3 57 49.1
Solyc01g073720.2 Solanum lycopersicum HOM05D004722 ORTHO05D005453 5.9e-06 54.3 61 52.5
BcaC05g24363 Brassica carinata HOM05D004722 ORTHO05D005453 7.7e-06 53.9 62 46.8
Sopen01g033290 Solanum pennellii HOM05D004722 ORTHO05D005453 7.7e-06 53.9 61 52.5
Sopen01g033320 Solanum pennellii HOM05D004722 ORTHO05D005453 7.7e-06 53.9 72 45.8
PGSC0003DMG400028984 Solanum tuberosum HOM05D004722 ORTHO05D005453 7.7e-06 53.9 61 52.5


User provided reference genes

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