Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g190910 Amaranthus hybridus HOM05D006190 ORTHO05D008260 0.0e+00 1217.6 594 100.0
EL10Ac8g20037 Beta vulgaris HOM05D006190 ORTHO05D008260 2.4e-230 802.4 568 71.5
AUR62006846 Chenopodium quinoa HOM05D006190 ORTHO05D008260 3.6e-218 761.9 457 80.5
AUR62000500 Chenopodium quinoa HOM05D006190 ORTHO05D008260 5.8e-216 754.6 457 80.1
Sc06g0009680 Simmondsia chinensis HOM05D006190 ORTHO05D008260 5.2e-193 678.3 569 60.6
Hund00609 Selenicereus undatus HOM05D006190 ORTHO05D008260 1.0e-188 664.1 557 61.6
CSS0039152 Camellia sinensis var. sinensis HOM05D006190 ORTHO05D008260 4.0e-185 652.1 566 57.6
vmacro12161 Vaccinium macrocarpon HOM05D006190 ORTHO05D008260 1.5e-184 650.2 562 58.5
Actinidia09748 Actinidia chinensis HOM05D006190 ORTHO05D008260 4.5e-184 648.7 566 58.1
TWI36G1256 Tripterygium wilfordii HOM05D006190 ORTHO05D008260 1.3e-183 647.1 566 57.1
Dinv39750 Davidia involucrata HOM05D006190 ORTHO05D008260 4.9e-183 645.2 565 57.2
Sopen05g026250 Solanum pennellii HOM05D006190 ORTHO05D008260 6.7e-180 634.8 562 57.5
Atru.chr6.3259 Acer truncatum HOM05D006190 ORTHO05D008260 1.9e-179 633.3 564 56.2
Ciclev10017756m.g Citrus clementina HOM05D006190 ORTHO05D008260 2.5e-179 632.9 562 57.3
Potri.002G224300 Populus trichocarpa HOM05D006190 ORTHO05D008260 2.5e-179 632.9 567 55.9
Prupe.3G210000 Prunus persica HOM05D006190 ORTHO05D008260 4.3e-179 632.1 567 56.1
MD17G1106200 Malus domestica HOM05D006190 ORTHO05D008260 9.6e-179 630.9 572 56.1
Rhsim04G0034400 Rhododendron simsii HOM05D006190 ORTHO05D008260 1.6e-178 630.2 561 57.4
PGR083G2874 Punica granatum HOM05D006190 ORTHO05D008260 1.4e-177 627.1 565 56.1
GSVIVG01030506001 Vitis vinifera HOM05D006190 ORTHO05D008260 2.4e-177 626.3 565 56.1
RcHm_v2.0_Chr2g0158021 Rosa chinensis HOM05D006190 ORTHO05D008260 3.1e-177 625.9 568 55.5
Manes.13G065900 Manihot esculenta HOM05D006190 ORTHO05D008260 4.5e-176 622.1 568 56.0
THA.LOC104800883 Tarenaya hassleriana HOM05D006190 ORTHO05D008260 5.8e-176 621.7 567 55.6
Thecc.01G182400 Theobroma cacao HOM05D006190 ORTHO05D008260 5.8e-176 621.7 565 55.4
FAN02G1605 Fragaria x ananassa HOM05D006190 ORTHO05D008260 4.9e-175 618.6 579 54.1
HanXRQChr03g0075981 Helianthus annuus HOM05D006190 ORTHO05D008260 1.1e-174 617.5 574 55.1
FAN14G2650 Fragaria x ananassa HOM05D006190 ORTHO05D008260 1.4e-174 617.1 565 55.4
Gohir.D07G088600 Gossypium hirsutum HOM05D006190 ORTHO05D008260 1.9e-174 616.7 565 54.3
Rhsim06G0167400 Rhododendron simsii HOM05D006190 ORTHO05D008260 2.4e-174 616.3 560 57.0
Gorai.001G095000 Gossypium raimondii HOM05D006190 ORTHO05D008260 4.2e-174 615.5 565 54.2
Gohir.A07G082100 Gossypium hirsutum HOM05D006190 ORTHO05D008260 7.1e-174 614.8 565 54.3
THA.LOC104798591 Tarenaya hassleriana HOM05D006190 ORTHO05D008260 1.6e-173 613.6 570 54.7
ClCG09G011200 Citrullus lanatus HOM05D006190 ORTHO05D008260 3.5e-173 612.5 568 54.6
Lj1A781G46 Lonicera japonica HOM05D006190 ORTHO05D008260 4.6e-173 612.1 562 55.7
Nitab4.5_0006063g0030 Nicotiana tabacum HOM05D006190 ORTHO05D008260 6.0e-173 611.7 563 55.8
Thhalv10016459m.g Eutrema salsugineum HOM05D006190 ORTHO05D008260 8.7e-172 607.8 567 53.8
CsaV3_6G037760 Cucumis sativus L. HOM05D006190 ORTHO05D008260 2.5e-171 606.3 568 54.8
Sed0027843 Sechium edule HOM05D006190 ORTHO05D008260 3.3e-171 605.9 567 53.3
DCAR_019742 Daucus carota HOM05D006190 ORTHO05D008260 3.7e-170 602.4 566 54.2
Sabra02G0171700 Salix brachista HOM05D006190 ORTHO05D008260 6.2e-170 601.7 583 53.3
ECA240G2645 Erigeron canadensis HOM05D006190 ORTHO05D008260 1.1e-169 600.9 562 54.8
Cfa014317 Carpinus fangiana HOM05D006190 ORTHO05D008260 1.4e-169 600.5 526 58.0
AL4G26570 Arabidopsis lyrata HOM05D006190 ORTHO05D008260 1.8e-169 600.1 567 53.4
Nn1g07299 Nelumbo nucifera HOM05D006190 ORTHO05D008260 4.0e-169 599.0 567 54.3
AT2G31340 Arabidopsis thaliana HOM05D006190 ORTHO05D008260 5.3e-169 598.6 567 53.3
BcaC02g11229 Brassica carinata HOM05D006190 ORTHO05D008260 5.3e-169 598.6 568 53.3
Carub.0004s1265 Capsella rubella HOM05D006190 ORTHO05D008260 6.9e-169 598.2 567 53.8
FvH4_6g42100 Fragaria vesca HOM05D006190 ORTHO05D008260 1.0e-167 594.3 540 56.3
Sp4g13810 Schrenkiella parvula HOM05D006190 ORTHO05D008260 1.7e-167 593.6 567 52.9
FAN05G0691 Fragaria x ananassa HOM05D006190 ORTHO05D008260 1.1e-166 590.9 616 50.5
Migut.F01671 Erythranthe guttata HOM05D006190 ORTHO05D008260 7.1e-166 588.2 558 54.7
arahy.Tifrunner.gnm1.ann1.5R2QIE Arachis hypogaea HOM05D006190 ORTHO05D008260 9.3e-166 587.8 573 52.0
MD09G1114700 Malus domestica HOM05D006190 ORTHO05D008260 1.2e-165 587.4 603 50.9
Lalb_Chr04g0264321 Lupinus albus HOM05D006190 ORTHO05D008260 3.5e-165 585.9 562 53.4
Solyc05g042120.4 Solanum lycopersicum HOM05D006190 ORTHO05D008260 6.7e-164 581.6 522 57.1
MSTRG.8117 Avicennia marina HOM05D006190 ORTHO05D008260 1.5e-163 580.5 561 53.7
arahy.Tifrunner.gnm1.ann1.BBUS42 Arachis hypogaea HOM05D006190 ORTHO05D008260 4.3e-163 578.9 566 51.6
Glyma.20G058400 Glycine max HOM05D006190 ORTHO05D008260 8.2e-162 574.7 565 52.9
Aqoxy3G00055 Aquilegia oxysepala HOM05D006190 ORTHO05D008260 1.2e-160 570.9 569 51.8
PSO541G5374 Papaver somniferum HOM05D006190 ORTHO05D008260 7.6e-160 568.2 571 51.3
Phvul.011G111400 Phaseolus vulgaris HOM05D006190 ORTHO05D008260 3.8e-159 565.8 571 51.5
PSO675G0778 Papaver somniferum HOM05D006190 ORTHO05D008260 5.0e-159 565.5 571 51.0
Phvul.006G013000 Phaseolus vulgaris HOM05D006190 ORTHO05D008260 4.2e-158 562.4 571 51.0
Rhsim04G0027600 Rhododendron simsii HOM05D006190 ORTHO05D008260 5.5e-158 562.0 561 53.8
Aa31LG5G5620 Aethionema arabicum HOM05D006190 ORTHO05D008260 1.6e-157 560.5 553 53.0
Medtr3g080550 Medicago truncatula HOM05D006190 ORTHO05D008260 7.9e-157 558.1 569 50.8
BcaB02g10385 Brassica carinata HOM05D006190 ORTHO05D008260 4.8e-154 548.9 540 52.8
Ca_16289_v3 Cicer arietinum L. HOM05D006190 ORTHO05D008260 9.1e-153 544.7 530 53.6
Nitab4.5_0000019g0350 Nicotiana tabacum HOM05D006190 ORTHO05D008260 2.0e-152 543.5 500 56.6
MELO3C014435.2 Cucumis melo HOM05D006190 ORTHO05D008260 5.0e-151 538.9 576 50.7
Peaxi162Scf00100g01525 Petunia axillaris HOM05D006190 ORTHO05D008260 1.9e-150 537.0 526 54.9
Haze_12765 Corylus avellana HOM05D006190 ORTHO05D008260 1.0e-148 531.2 582 49.8
Lj6g0020329 Lotus japonicus HOM05D006190 ORTHO05D008260 6.7e-148 528.5 570 49.6
Lsat_1_v5_gn_9_105860 Lactuca sativa HOM05D006190 ORTHO05D008260 4.4e-147 525.8 503 53.1
SGA_v2.0_scaffold13G06447 Striga asiatica HOM05D006190 ORTHO05D008260 2.8e-146 523.1 523 52.8
Eucgr.A01784 Eucalyptus grandis HOM05D006190 ORTHO05D008260 6.3e-146 521.9 561 49.0
HPP92_020505 Vanilla planifolia HOM05D006190 ORTHO05D008260 3.1e-137 493.0 573 45.4
Rhsim04G0033900 Rhododendron simsii HOM05D006190 ORTHO05D008260 7.0e-137 491.9 475 54.9
CiPaw.03G155000 Carya illinoinensis HOM05D006190 ORTHO05D008260 2.6e-136 490.0 460 54.6
MBI19_g03678_MAGBIO Magnolia biondii HOM05D006190 ORTHO05D008260 3.5e-136 489.6 565 47.1
Eucgr.K00752 Eucalyptus grandis HOM05D006190 ORTHO05D008260 2.3e-132 476.9 460 53.3
QL08p030638 Quercus lobata HOM05D006190 ORTHO05D008260 3.0e-132 476.5 494 51.0
Lsat_1_v5_gn_2_93981 Lactuca sativa HOM05D006190 ORTHO05D008260 1.2e-131 474.6 430 55.8
COL.COLO4_21885 Corchorus olitorius HOM05D006190 ORTHO05D008260 7.0e-129 465.3 459 51.0
unitig_46.g18456 Utricularia gibba HOM05D006190 ORTHO05D008260 7.0e-129 465.3 577 47.0
ATR0736G101 Amborella trichopoda HOM05D006190 ORTHO05D008260 2.3e-124 450.3 582 43.6
Os09g0296400 Oryza sativa ssp. japonica HOM05D006190 ORTHO05D008260 1.2e-123 448.0 570 43.0
Cpa.g.sc132.24 Carica papaya HOM05D006190 ORTHO05D008260 2.0e-115 420.6 660 40.2
Zm00001eb309080 Zea mays HOM05D006190 ORTHO05D008260 2.8e-109 400.2 530 41.7
VMungo1127G1525 Vigna mungo HOM05D006190 ORTHO05D008260 2.0e-107 394.0 645 37.1
TPR.G342 Trifolium pratense HOM05D006190 ORTHO05D008260 7.3e-94 349.0 409 47.2
Psat5g111200 Pisum sativum HOM05D006190 ORTHO05D008260 4.7e-85 319.7 230 63.5
CAN.G795.2 Capsicum annuum HOM05D006190 ORTHO05D008260 2.0e-83 314.3 259 61.4
Pp3c23_22000 Physcomitrium patens HOM05D006190 ORTHO05D008260 2.0e-83 314.3 604 33.3
TAR020G0003 Trochodendron aralioides HOM05D006190 ORTHO05D008260 2.2e-82 310.8 348 51.1
CARHR124960 Cardamine hirsuta HOM05D006190 ORTHO05D008260 7.8e-80 302.4 267 56.6
A05p14270 Brassica napus HOM05D006190 ORTHO05D008260 1.0e-79 302.0 264 57.2
Psat5g111240 Pisum sativum HOM05D006190 ORTHO05D008260 2.3e-79 300.8 266 57.9
Oeu015050.1 Olea europaea HOM05D006190 ORTHO05D008260 6.6e-79 299.3 262 58.4
CDE07G0814 Ceratophyllum demersum HOM05D006190 ORTHO05D008260 3.6e-77 293.5 219 62.6
FAN18G3300 Fragaria x ananassa HOM05D006190 ORTHO05D008260 5.8e-75 286.2 251 58.2
TPR.G18389 Trifolium pratense HOM05D006190 ORTHO05D008260 1.7e-74 284.6 207 63.8
Mapoly0014s0084 Marchantia polymorpha HOM05D006190 ORTHO05D008260 8.7e-71 272.3 601 29.1
SEGI_33791 Sequoiadendron giganteum HOM05D006190 ORTHO05D008260 1.5e-67 261.5 226 53.5
SHI10054 Sapria himalayana HOM05D006190 ORTHO05D000001 6.4e-66 256.1 339 44.2
Aa31sc34G90 Aethionema arabicum HOM05D006190 ORTHO05D008260 3.5e-64 250.4 167 68.3
Oeu015049.1 Olea europaea HOM05D006190 ORTHO05D008260 2.1e-61 241.1 158 70.9
SHI10056 Sapria himalayana HOM05D006190 ORTHO05D008260 1.5e-59 235.0 165 64.2
Sopen11g022430 Solanum pennellii HOM05D006190 ORTHO05D008260 2.3e-55 221.1 207 55.6
C04p19010 Brassica napus HOM05D006190 ORTHO05D008260 3.9e-55 220.3 167 62.9
THA.LOC104822845 Tarenaya hassleriana HOM05D006190 ORTHO05D008260 1.4e-49 201.8 140 65.7
BcaC01g05972 Brassica carinata HOM05D006190 ORTHO05D008260 1.4e-39 168.7 182 50.0
TPR.G36458 Trifolium pratense HOM05D006190 ORTHO05D008260 9.1e-36 156.0 166 49.4
FAN10G3459 Fragaria x ananassa HOM05D006190 ORTHO05D008260 4.7e-32 143.7 145 51.0
QL08p030629 Quercus lobata HOM05D006190 ORTHO05D027094 5.1e-31 140.2 86 72.1
Lsat_1_v5_gn_5_72540 Lactuca sativa HOM05D006190 ORTHO05D008260 5.7e-30 136.7 95 63.2
C03p20570 Brassica napus HOM05D006190 ORTHO05D008260 1.0e-26 125.9 148 48.6
CBR_g25881 Chara braunii HOM05D006190 ORTHO05D008260 3.6e-24 117.5 175 36.0
Hund15364 Selenicereus undatus HOM05D006190 ORTHO05D027094 3.8e-18 97.4 50 88.0
CDE04G2645 Ceratophyllum demersum HOM05D006190 ORTHO05D008260 2.8e-13 81.3 118 40.7
Sabra14G0120600 Salix brachista HOM05D006190 ORTHO05D008260 5.0e-10 70.5 100 43.0
BcaC02g11231 Brassica carinata HOM05D006190 ORTHO05D027094 8.5e-10 69.7 53 62.3
BcaC01g05961 Brassica carinata HOM05D006190 ORTHO05D008260 1.1e-09 69.3 88 46.6
Lsat_1_v5_gn_1_125520 Lactuca sativa HOM05D006190 ORTHO05D008260 1.1e-09 69.3 62 53.2


User provided reference genes

Program Settings