Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g190730 Amaranthus hybridus HOM05D005826 ORTHO05D004357 4.4e-128 461.5 262 100.0
EL10Ac4g09561 Beta vulgaris HOM05D005826 ORTHO05D004357 8.2e-98 360.9 298 72.8
AUR62006820 Chenopodium quinoa HOM05D005826 ORTHO05D004357 1.0e-95 354.0 304 68.1
Hund21832 Selenicereus undatus HOM05D005826 ORTHO05D004357 3.7e-90 335.5 310 63.2
AUR62000478 Chenopodium quinoa HOM05D005826 ORTHO05D004357 6.3e-90 334.7 276 69.2
Hund07271 Selenicereus undatus HOM05D005826 ORTHO05D004357 8.2e-90 334.3 306 65.0
CsaV3_1G038040 Cucumis sativus L. HOM05D005826 ORTHO05D004357 4.1e-81 305.4 303 59.7
Sc09g0002410 Simmondsia chinensis HOM05D005826 ORTHO05D004357 1.5e-80 303.5 308 60.1
Sed0027683 Sechium edule HOM05D005826 ORTHO05D004357 1.9e-78 296.6 303 58.1
Psat3g015120 Pisum sativum HOM05D005826 ORTHO05D004357 5.5e-78 295.0 302 55.0
Lalb_Chr18g0046231 Lupinus albus HOM05D005826 ORTHO05D004357 9.4e-78 294.3 306 58.2
VMungo1383G1915 Vigna mungo HOM05D005826 ORTHO05D004357 9.4e-78 294.3 306 55.9
CiPaw.07G036400 Carya illinoinensis HOM05D005826 ORTHO05D004357 1.2e-77 293.9 305 60.7
Glyma.03G228100 Glycine max HOM05D005826 ORTHO05D004357 2.1e-77 293.1 306 55.9
Dinv30950 Davidia involucrata HOM05D005826 ORTHO05D004357 2.7e-77 292.7 288 60.1
Actinidia17738 Actinidia chinensis HOM05D005826 ORTHO05D004357 4.7e-77 292.0 309 60.2
Eucgr.B01823 Eucalyptus grandis HOM05D005826 ORTHO05D004357 1.8e-76 290.0 298 60.7
Rhsim11G0105000 Rhododendron simsii HOM05D005826 ORTHO05D004357 1.8e-76 290.0 275 64.0
CANSAT54G1651 Cannabis sativa HOM05D005826 ORTHO05D004357 2.3e-76 289.7 309 58.6
Cpa.g.sc48.51 Carica papaya HOM05D005826 ORTHO05D004357 2.3e-76 289.7 302 58.6
Cfa006771 Carpinus fangiana HOM05D005826 ORTHO05D004357 3.0e-76 289.3 299 57.5
Nn3g21953 Nelumbo nucifera HOM05D005826 ORTHO05D004357 3.0e-76 289.3 298 56.4
Glyma.19G225400 Glycine max HOM05D005826 ORTHO05D004357 5.2e-76 288.5 304 57.9
Lj1g0011738 Lotus japonicus HOM05D005826 ORTHO05D004357 1.5e-75 287.0 304 58.6
PGR083G1613 Punica granatum HOM05D005826 ORTHO05D004357 2.6e-75 286.2 301 60.1
THA.LOC104821749 Tarenaya hassleriana HOM05D005826 ORTHO05D004357 5.7e-75 285.0 303 57.8
Ca_09273_v3 Cicer arietinum L. HOM05D005826 ORTHO05D004357 7.4e-75 284.6 308 54.9
MD12G1199800 Malus domestica HOM05D005826 ORTHO05D004357 7.4e-75 284.6 305 57.0
TWI12G0016 Tripterygium wilfordii HOM05D005826 ORTHO05D004357 7.4e-75 284.6 300 59.0
Atru.chr12.1539 Acer truncatum HOM05D005826 ORTHO05D004357 1.3e-74 283.9 300 59.0
Phvul.001G222000 Phaseolus vulgaris HOM05D005826 ORTHO05D004357 1.3e-74 283.9 306 57.8
GSVIVG01031331001 Vitis vinifera HOM05D005826 ORTHO05D004357 2.2e-74 283.1 312 57.7
Ciclev10012662m.g Citrus clementina HOM05D005826 ORTHO05D004357 3.7e-74 282.3 302 59.6
Manes.09G181300 Manihot esculenta HOM05D005826 ORTHO05D004357 6.3e-74 281.6 282 59.6
arahy.Tifrunner.gnm1.ann1.TKMT5T Arachis hypogaea HOM05D005826 ORTHO05D004357 1.1e-73 280.8 307 58.3
TPR.G1630 Trifolium pratense HOM05D005826 ORTHO05D004357 1.1e-73 280.8 308 54.9
arahy.Tifrunner.gnm1.ann1.CWLZ7L Arachis hypogaea HOM05D005826 ORTHO05D004357 1.8e-73 280.0 307 58.3
vmacro01667 Vaccinium macrocarpon HOM05D005826 ORTHO05D004357 1.8e-73 280.0 303 58.7
Hma1.2p1_0052F.1_g030400 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 7.0e-73 278.1 277 59.2
Solyc01g101250.3 Solanum lycopersicum HOM05D005826 ORTHO05D004357 9.1e-73 277.7 297 54.9
Sopen01g044700 Solanum pennellii HOM05D005826 ORTHO05D004357 9.1e-73 277.7 297 54.9
Medtr7g111520 Medicago truncatula HOM05D005826 ORTHO05D004357 2.0e-72 276.6 306 58.2
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 5.9e-72 275.0 289 59.9
Aqoxy2G02470 Aquilegia oxysepala HOM05D005826 ORTHO05D004357 7.7e-72 274.6 293 60.1
Nn4g25335 Nelumbo nucifera HOM05D005826 ORTHO05D004357 1.3e-71 273.9 290 59.0
Thecc.05G329600 Theobroma cacao HOM05D005826 ORTHO05D004357 3.8e-71 272.3 306 53.9
Migut.N00974 Erythranthe guttata HOM05D005826 ORTHO05D004357 6.5e-71 271.6 300 52.3
SGA_v2.0_scaffold22G09707 Striga asiatica HOM05D005826 ORTHO05D004357 1.9e-70 270.0 294 55.4
Manes.08G107500 Manihot esculenta HOM05D005826 ORTHO05D004357 3.2e-70 269.2 294 55.1
FvH4_6g08510 Fragaria vesca HOM05D005826 ORTHO05D004357 5.5e-70 268.5 299 58.9
FAN14G1262 Fragaria x ananassa HOM05D005826 ORTHO05D004357 1.2e-69 267.3 299 58.5
CAN.G1248.16 Capsicum annuum HOM05D005826 ORTHO05D004357 1.6e-69 266.9 309 56.3
FAN09G2233 Fragaria x ananassa HOM05D005826 ORTHO05D004357 4.7e-69 265.4 299 58.5
COL.COLO4_05485 Corchorus olitorius HOM05D005826 ORTHO05D004357 6.1e-69 265.0 304 53.6
Haze_03986 Corylus avellana HOM05D005826 ORTHO05D004357 6.8e-68 261.5 251 59.4
HPP92_006322 Vanilla planifolia HOM05D005826 ORTHO05D004357 2.6e-67 259.6 309 51.1
DCAR_006590 Daucus carota HOM05D005826 ORTHO05D004357 7.5e-67 258.1 176 75.6
Lsat_1_v5_gn_7_64900 Lactuca sativa HOM05D005826 ORTHO05D004357 7.5e-67 258.1 314 53.2
HPP92_027884 Vanilla planifolia HOM05D005826 ORTHO05D004357 9.7e-67 257.7 307 51.1
Carub.0006s2438 Capsella rubella HOM05D005826 ORTHO05D004357 2.8e-66 256.1 300 52.3
AT5G26610 Arabidopsis thaliana HOM05D005826 ORTHO05D004357 1.1e-65 254.2 300 51.0
TAR636G1621 Trochodendron aralioides HOM05D005826 ORTHO05D004357 4.1e-65 252.3 301 52.5
ClCG03G017880 Citrullus lanatus HOM05D005826 ORTHO05D004357 1.2e-64 250.8 338 50.0
Hma1.2p1_0052F.1_g030390 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 2.7e-64 249.6 158 79.1
Sabra13G0001500 Salix brachista HOM05D005826 ORTHO05D004357 1.0e-63 247.7 294 58.2
AL6G38590 Arabidopsis lyrata HOM05D005826 ORTHO05D004357 8.5e-63 244.6 328 47.6
Mapoly0026s0010 Marchantia polymorpha HOM05D005826 ORTHO05D004357 4.2e-62 242.3 289 49.5
SEGI_10560 Sequoiadendron giganteum HOM05D005826 ORTHO05D004357 9.4e-62 241.1 294 51.4
unitig_26.g9561 Utricularia gibba HOM05D005826 ORTHO05D005018 9.4e-62 241.1 164 74.4
Pp3c20_6860 Physcomitrium patens HOM05D005826 ORTHO05D004357 8.8e-60 234.6 281 50.5
Dinv24515 Davidia involucrata HOM05D005826 ORTHO05D004357 5.7e-59 231.9 303 56.1
Zm00001eb089260 Zea mays HOM05D005826 ORTHO05D004357 3.7e-58 229.2 282 54.3
Thhalv10004695m.g Eutrema salsugineum HOM05D005826 ORTHO05D004357 4.8e-58 228.8 302 50.7
CSS0045001 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 9.1e-57 224.6 294 53.4
CSS0017545 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 5.9e-56 221.9 292 53.4
RcHm_v2.0_Chr3g0458551 Rosa chinensis HOM05D005826 ORTHO05D004357 1.7e-55 220.3 300 53.0
ATR0796G273 Amborella trichopoda HOM05D005826 ORTHO05D004357 2.3e-55 219.9 294 51.4
Rhsim11G0104700 Rhododendron simsii HOM05D005826 ORTHO05D004357 8.6e-55 218.0 255 57.3
Potri.005G002700 Populus trichocarpa HOM05D005826 ORTHO05D004357 5.5e-54 215.3 292 53.8
Cc02_g35870 Coffea canephora HOM05D005826 ORTHO05D004357 2.1e-53 213.4 295 49.2
FAN02G3127 Fragaria x ananassa HOM05D005826 ORTHO05D004357 2.1e-53 213.4 294 48.0
ECA240G4745 Erigeron canadensis HOM05D005826 ORTHO05D004357 4.0e-52 209.1 319 49.2
MBI12_g27791_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 8.9e-52 208.0 176 59.1
Sabra05G0000100 Salix brachista HOM05D005826 ORTHO05D004357 2.0e-51 206.8 285 52.3
Sabra05G0014200 Salix brachista HOM05D005826 ORTHO05D004357 2.0e-51 206.8 285 52.3
QL03p011008 Quercus lobata HOM05D005826 ORTHO05D004357 2.6e-51 206.5 298 50.7
A09p05710 Brassica napus HOM05D005826 ORTHO05D004357 3.7e-50 202.6 301 45.8
BraA09t36211Z Brassica rapa HOM05D005826 ORTHO05D004357 3.7e-50 202.6 301 45.8
MSTRG.27910 Avicennia marina HOM05D005826 ORTHO05D004357 1.4e-49 200.7 299 45.2
Prupe.6G304400 Prunus persica HOM05D005826 ORTHO05D004357 9.2e-49 198.0 307 49.2
FAN05G0435 Fragaria x ananassa HOM05D005826 ORTHO05D004357 2.0e-48 196.8 299 49.2
HanXRQChr09g0247941 Helianthus annuus HOM05D005826 ORTHO05D004357 3.5e-48 196.1 285 50.2
BcaC04g23633 Brassica carinata HOM05D005826 ORTHO05D004357 1.0e-47 194.5 301 46.5
C09p06300 Brassica napus HOM05D005826 ORTHO05D004357 1.0e-47 194.5 301 46.5
BolC9t53550H Brassica oleracea HOM05D005826 ORTHO05D004357 1.0e-47 194.5 301 46.5
PSO210G7107 Papaver somniferum HOM05D005826 ORTHO05D004357 1.3e-47 194.1 307 48.9
PSO761G0619 Papaver somniferum HOM05D005826 ORTHO05D004357 4.3e-46 189.1 307 47.9
Peaxi162Scf00194g00018 Petunia axillaris HOM05D005826 ORTHO05D004357 5.6e-46 188.7 295 44.1
Gorai.013G210000 Gossypium raimondii HOM05D005826 ORTHO05D004357 2.1e-45 186.8 314 47.5
Gohir.D13G184300 Gossypium hirsutum HOM05D005826 ORTHO05D004357 3.6e-45 186.0 316 47.2
SMO196G0190 Selaginella moellendorffii HOM05D005826 ORTHO05D004357 4.7e-45 185.7 154 60.4
Sp2g21260 Schrenkiella parvula HOM05D005826 ORTHO05D004357 1.0e-44 184.5 300 43.0
Nitab4.5_0002516g0020 Nicotiana tabacum HOM05D005826 ORTHO05D004357 5.2e-44 182.2 325 41.5
MBI09_g02136_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 6.8e-44 181.8 176 56.8
Aa31LG11G9920 Aethionema arabicum HOM05D005826 ORTHO05D004357 9.8e-43 177.9 357 39.2
Nitab4.5_0005662g0030 Nicotiana tabacum HOM05D005826 ORTHO05D004357 8.3e-42 174.9 176 60.2
Gohir.A13G177700 Gossypium hirsutum HOM05D005826 ORTHO05D004357 1.4e-41 174.1 185 56.8
CDE01G0499 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 1.2e-40 171.0 298 45.3
BcaB04g19716 Brassica carinata HOM05D005826 ORTHO05D004357 3.5e-40 169.5 301 41.9
CARHR186850 Cardamine hirsuta HOM05D005826 ORTHO05D004357 8.6e-39 164.9 269 43.1
AagrBONN_evm.TU.Sc2ySwM_362.2503 Anthoceros agrestis HOM05D005826 ORTHO05D004357 1.2e-37 161.0 132 62.1
Os04g0115400 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 6.2e-37 158.7 117 66.7
CBR_g48434 Chara braunii HOM05D005826 ORTHO05D004357 1.4e-36 157.5 109 67.0
MELO3C015241.2 Cucumis melo HOM05D005826 ORTHO05D004357 4.1e-33 146.0 101 72.3
MBI06_g28828_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 2.3e-31 140.2 149 51.7
MBI12_g47801_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 2.3e-31 140.2 177 47.5
BcaNung03909 Brassica carinata HOM05D005826 ORTHO05D004357 1.5e-27 127.5 126 54.0
MELO3C021663.2 Cucumis melo HOM05D005826 ORTHO05D004357 2.7e-24 116.7 63 88.9
Potri.013G002100 Populus trichocarpa HOM05D005826 ORTHO05D004357 5.1e-23 112.5 164 57.9
BcaNung03680 Brassica carinata HOM05D005826 ORTHO05D004357 8.9e-20 101.7 96 58.3
Cre03.g201250 Chlamydomonas reinhardtii HOM05D005826 ORTHO05D004357 8.9e-20 101.7 190 37.4
C07p41530 Brassica napus HOM05D005826 ORTHO05D004357 1.7e-18 97.4 93 58.1
BolC7t44686H Brassica oleracea HOM05D005826 ORTHO05D004357 1.7e-18 97.4 93 58.1
Os05g0229475 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 1.3e-13 81.3 48 77.1
PGR083G0870 Punica granatum HOM05D005826 ORTHO05D004357 1.7e-10 70.9 127 39.4
RcHm_v2.0_Chr5g0030611 Rosa chinensis HOM05D006753 ORTHO05D008521 7.8e-08 62.0 99 38.4
FAN11G3971 Fragaria x ananassa HOM05D006753 ORTHO05D008521 1.7e-07 60.8 105 38.1
Oeu023421.1 Olea europaea HOM05D005826 ORTHO05D004357 1.7e-07 60.8 58 60.3
CDE12G0861 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 3.9e-07 59.7 29 89.7
Zm00001eb044950 Zea mays HOM05D006753 ORTHO05D008521 3.9e-07 59.7 104 36.5
ECA247G0541 Erigeron canadensis HOM05D002899 ORTHO05D003850 6.6e-07 58.9 48 52.1
FvH4_3g18161 Fragaria vesca HOM05D006753 ORTHO05D008521 8.7e-07 58.5 105 37.1
Cfa018673 Carpinus fangiana HOM05D006753 ORTHO05D008521 1.5e-06 57.8 105 34.3
CDE12G0199 Ceratophyllum demersum HOM05D005384 ORTHO05D006477 1.5e-06 57.8 71 33.8
BraA06t26622Z Brassica rapa HOM05D005826 ORTHO05D004357 1.9e-06 57.4 41 65.9
AUR62017753 Chenopodium quinoa HOM05D006753 ORTHO05D008521 1.9e-06 57.4 124 33.9
Os10g0491900 Oryza sativa ssp. japonica HOM05D006753 ORTHO05D008521 1.9e-06 57.4 107 33.6
Sc22g0001400 Simmondsia chinensis HOM05D005384 ORTHO05D006477 1.9e-06 57.4 71 35.2
HPP92_003487 Vanilla planifolia HOM05D006753 ORTHO05D008521 1.9e-06 57.4 54 51.9
HPP92_026885 Vanilla planifolia HOM05D006753 ORTHO05D008521 1.9e-06 57.4 54 51.9
SEGI_04448 Sequoiadendron giganteum HOM05D008111 ORTHO05D010192 2.5e-06 57.0 55 47.3
SEGI_21811 Sequoiadendron giganteum HOM05D008111 ORTHO05D002142 3.3e-06 56.6 54 48.1
A09p59170 Brassica napus HOM05D006753 ORTHO05D008521 4.3e-06 56.2 53 50.9
AUR62032899 Chenopodium quinoa HOM05D006753 ORTHO05D008521 4.3e-06 56.2 112 34.8
Lsat_1_v5_gn_2_64221 Lactuca sativa HOM05D006753 ORTHO05D008521 4.3e-06 56.2 60 48.3
SEGI_37624 Sequoiadendron giganteum HOM05D008111 ORTHO05D010192 4.3e-06 56.2 55 41.8
GSVIVG01024262001 Vitis vinifera HOM05D002899 ORTHO05D003850 4.3e-06 56.2 101 32.7
Actinidia08787 Actinidia chinensis HOM05D002899 ORTHO05D003850 5.6e-06 55.8 42 57.1
ATR0124G001 Amborella trichopoda HOM05D006753 ORTHO05D008521 5.6e-06 55.8 112 30.4
AT2G42330 Arabidopsis thaliana HOM05D002899 ORTHO05D003850 5.6e-06 55.8 108 31.5
CSS0044416 Camellia sinensis var. sinensis HOM05D002899 ORTHO05D003850 5.6e-06 55.8 42 57.1
CBR_g4860 Chara braunii HOM05D006823 ORTHO05D008608 5.6e-06 55.8 101 31.7
Lj4g0003244 Lotus japonicus HOM05D005384 ORTHO05D006477 5.6e-06 55.8 68 36.8
Thecc.02G152400 Theobroma cacao HOM05D006753 ORTHO05D008521 5.6e-06 55.8 106 35.8
CiPaw.16G000900 Carya illinoinensis HOM05D006753 ORTHO05D008521 7.3e-06 55.5 113 33.6
Lalb_Chr05g0228951 Lupinus albus HOM05D005384 ORTHO05D006477 7.3e-06 55.5 68 36.8
PSO063G2822 Papaver somniferum HOM05D006753 ORTHO05D008521 7.3e-06 55.5 54 48.1
TPR.G28963 Trifolium pratense HOM05D005384 ORTHO05D006477 7.3e-06 55.5 68 36.8
EL10Ac8g19736 Beta vulgaris HOM05D005384 ORTHO05D006477 9.6e-06 55.1 71 33.8
A06p36960 Brassica napus HOM05D005826 ORTHO05D004357 9.6e-06 55.1 41 63.4
ClCG02G007900 Citrullus lanatus HOM05D002899 ORTHO05D003850 9.6e-06 55.1 42 57.1
MELO3C024757.2 Cucumis melo HOM05D002899 ORTHO05D003850 9.6e-06 55.1 42 57.1
Duzib132G0454 Durio zibethinus HOM05D006753 ORTHO05D008521 9.6e-06 55.1 104 32.7
Thhalv10006789m.g Eutrema salsugineum HOM05D002899 ORTHO05D003850 9.6e-06 55.1 43 53.5
Gohir.A11G221200 Gossypium hirsutum HOM05D002899 ORTHO05D003850 9.6e-06 55.1 42 57.1
Gohir.D10G191600 Gossypium hirsutum HOM05D002899 ORTHO05D003850 9.6e-06 55.1 42 57.1
Gohir.D11G234700 Gossypium hirsutum HOM05D002899 ORTHO05D003850 9.6e-06 55.1 42 57.1
Gorai.007G247300 Gossypium raimondii HOM05D002899 ORTHO05D003850 9.6e-06 55.1 42 57.1
Gorai.011G214400 Gossypium raimondii HOM05D002899 ORTHO05D003850 9.6e-06 55.1 42 57.1
Lj5g0026283 Lotus japonicus HOM05D006753 ORTHO05D008521 9.6e-06 55.1 106 33.0
Lalb_Chr16g0391981 Lupinus albus HOM05D005384 ORTHO05D006477 9.6e-06 55.1 68 35.3
Nn3g18540 Nelumbo nucifera HOM05D006753 ORTHO05D008521 9.6e-06 55.1 112 36.6
Oeu054547.2 Olea europaea HOM05D005384 ORTHO05D006477 9.6e-06 55.1 66 36.4
Os04g0114801 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 9.6e-06 55.1 65 50.8
PSO782G2482 Papaver somniferum HOM05D006753 ORTHO05D008521 9.6e-06 55.1 48 52.1


User provided reference genes

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