Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g190360 Amaranthus hybridus HOM05D003567 ORTHO05D018272 1.8e-63 245.7 126 100.0
Ah.06g190370 Amaranthus hybridus HOM05D022744 ORTHO05D018272 1.4e-23 113.2 57 100.0
AUR62000902 Chenopodium quinoa HOM05D003567 ORTHO05D004117 3.1e-18 95.5 73 72.6
EL10Ac4g09285 Beta vulgaris HOM05D003567 ORTHO05D004117 6.9e-18 94.4 65 73.8
AUR62005073 Chenopodium quinoa HOM05D003567 ORTHO05D004117 9.9e-17 90.5 69 73.9
Hund07025 Selenicereus undatus HOM05D003567 ORTHO05D004117 1.4e-10 70.1 71 54.9
AUR62033882 Chenopodium quinoa HOM05D003567 ORTHO05D004117 6.9e-10 67.8 43 81.4
Glyma.03G241900 Glycine max HOM05D003567 ORTHO05D004117 9.0e-10 67.4 66 57.6
FvH4_6g04940 Fragaria vesca HOM05D003567 ORTHO05D004117 2.6e-09 65.9 77 51.9
Dinv22925 Davidia involucrata HOM05D003567 ORTHO05D004117 5.8e-09 64.7 47 70.2
Cc02_g32800 Coffea canephora HOM05D003567 ORTHO05D004117 7.6e-09 64.3 65 60.0
FAN14G3462 Fragaria x ananassa HOM05D003567 ORTHO05D004117 7.6e-09 64.3 77 51.9
Peaxi162Scf00338g00312 Petunia axillaris HOM05D003567 ORTHO05D004117 7.6e-09 64.3 71 53.5
Lj1g0016651 Lotus japonicus HOM05D003567 ORTHO05D004117 9.9e-09 63.9 58 60.3
AT5G27290 Arabidopsis thaliana HOM05D003567 ORTHO05D004117 1.3e-08 63.5 53 60.4
CARHR185910 Cardamine hirsuta HOM05D003567 ORTHO05D004117 1.3e-08 63.5 53 60.4
AL6G39790 Arabidopsis lyrata HOM05D003567 ORTHO05D004117 1.7e-08 63.2 53 60.4
Sp2g20530 Schrenkiella parvula HOM05D003567 ORTHO05D004117 2.2e-08 62.8 53 62.3
Duzib177G1144 Durio zibethinus HOM05D003567 ORTHO05D004117 2.9e-08 62.4 53 64.2
Rhsim05G0146400 Rhododendron simsii HOM05D003567 ORTHO05D004117 2.9e-08 62.4 66 56.1
CSS0000473 Camellia sinensis var. sinensis HOM05D003567 ORTHO05D004117 3.8e-08 62.0 47 68.1
CSS0010999 Camellia sinensis var. sinensis HOM05D003567 ORTHO05D004117 3.8e-08 62.0 47 68.1
Thhalv10004533m.g Eutrema salsugineum HOM05D003567 ORTHO05D004117 3.8e-08 62.0 53 62.3
Carub.0006s2522 Capsella rubella HOM05D003567 ORTHO05D004117 4.9e-08 61.6 53 60.4
ClCG03G016590 Citrullus lanatus HOM05D003567 ORTHO05D004117 4.9e-08 61.6 45 66.7
Lsat_1_v5_gn_5_38921 Lactuca sativa HOM05D003567 ORTHO05D004117 6.4e-08 61.2 48 64.6
Manes.08G124900 Manihot esculenta HOM05D003567 ORTHO05D004117 6.4e-08 61.2 53 62.3
VMungo0540G1876 Vigna mungo HOM05D003567 ORTHO05D004117 6.4e-08 61.2 45 68.9
BcaB04g19661 Brassica carinata HOM05D003567 ORTHO05D004117 8.4e-08 60.8 53 60.4
BcaC04g23687 Brassica carinata HOM05D003567 ORTHO05D004117 8.4e-08 60.8 53 60.4
RcHm_v2.0_Chr3g0453431 Rosa chinensis HOM05D003567 ORTHO05D004117 8.4e-08 60.8 78 50.0
Sabra13G0029300 Salix brachista HOM05D003567 ORTHO05D004117 8.4e-08 60.8 45 68.9
GSVIVG01022011001 Vitis vinifera HOM05D003567 ORTHO05D004117 8.4e-08 60.8 45 68.9
MELO3C015365.2 Cucumis melo HOM05D003567 ORTHO05D004117 1.1e-07 60.5 93 45.2
Eucgr.H04431 Eucalyptus grandis HOM05D003567 ORTHO05D004117 1.1e-07 60.5 45 66.7
BcaB04g19664 Brassica carinata HOM05D003567 ORTHO05D004117 1.4e-07 60.1 53 60.4
BcaC04g23684 Brassica carinata HOM05D003567 ORTHO05D004117 1.4e-07 60.1 53 60.4
A09p05230 Brassica napus HOM05D003567 ORTHO05D004117 1.4e-07 60.1 53 58.5
BolC9t53498H Brassica oleracea HOM05D003567 ORTHO05D004117 1.4e-07 60.1 53 60.4
BraA09t36162Z Brassica rapa HOM05D003567 ORTHO05D004117 1.4e-07 60.1 53 58.5
CsaV3_1G039400 Cucumis sativus L. HOM05D003567 ORTHO05D004117 1.4e-07 60.1 93 45.2
Gohir.D11G270600 Gossypium hirsutum HOM05D003567 ORTHO05D004117 1.4e-07 60.1 53 60.4
Gorai.007G291100 Gossypium raimondii HOM05D003567 ORTHO05D004117 1.4e-07 60.1 53 60.4
Sed0017789 Sechium edule HOM05D003567 ORTHO05D004117 1.4e-07 60.1 48 64.6
Gohir.A11G260300 Gossypium hirsutum HOM05D003567 ORTHO05D004117 1.9e-07 59.7 48 64.6
Lalb_Chr18g0045341 Lupinus albus HOM05D003567 ORTHO05D004117 1.9e-07 59.7 45 66.7
Potri.013G029000 Populus trichocarpa HOM05D003567 ORTHO05D004117 1.9e-07 59.7 48 64.6
PGR031G0264 Punica granatum HOM05D003567 ORTHO05D004117 1.9e-07 59.7 62 50.0
Sc06g0003450 Simmondsia chinensis HOM05D003567 ORTHO05D004117 1.9e-07 59.7 53 62.3
TAR362G0113 Trochodendron aralioides HOM05D003567 ORTHO05D004117 1.9e-07 59.7 48 64.6
MD04G1212700 Malus domestica HOM05D003567 ORTHO05D004117 2.4e-07 59.3 45 66.7
QL03p002916 Quercus lobata HOM05D003567 ORTHO05D004117 2.4e-07 59.3 58 56.9
C09p05690 Brassica napus HOM05D003567 ORTHO05D004117 3.2e-07 58.9 53 60.4
QL03p003527 Quercus lobata HOM05D003567 ORTHO05D004117 3.2e-07 58.9 42 69.0
Thecc.05G296900 Theobroma cacao HOM05D003567 ORTHO05D004117 4.2e-07 58.5 48 62.5
DCAR_016974 Daucus carota HOM05D003567 ORTHO05D004117 5.5e-07 58.2 58 55.2
Prupe.6G333000 Prunus persica HOM05D003567 ORTHO05D004117 5.5e-07 58.2 65 53.8
Ca_09384_v3 Cicer arietinum L. HOM05D003567 ORTHO05D004117 7.1e-07 57.8 45 64.4
Aa31LG11G9050 Aethionema arabicum HOM05D003567 ORTHO05D004117 9.3e-07 57.4 53 54.7
Cpa.g.sc84.115 Carica papaya HOM05D003567 ORTHO05D004117 9.3e-07 57.4 53 56.6
COL.COLO4_13563 Corchorus olitorius HOM05D003567 ORTHO05D004117 1.2e-06 57.0 45 64.4
Phvul.006G095900 Phaseolus vulgaris HOM05D003567 ORTHO05D004117 1.2e-06 57.0 45 66.7
CANSAT54G0395 Cannabis sativa HOM05D003567 ORTHO05D004117 1.6e-06 56.6 61 54.1
MBI10_g29587_MAGBIO Magnolia biondii HOM05D003567 ORTHO05D004117 1.6e-06 56.6 46 63.0
Solyc02g090020.4 Solanum lycopersicum HOM05D003567 ORTHO05D004117 1.6e-06 56.6 42 69.0
vmacro19654 Vaccinium macrocarpon HOM05D003567 ORTHO05D004117 1.6e-06 56.6 51 58.8
MSTRG.10545 Avicennia marina HOM05D003567 ORTHO05D004117 2.1e-06 56.2 48 60.4
CAN.G836.16 Capsicum annuum HOM05D003567 ORTHO05D004117 2.1e-06 56.2 42 69.0
Medtr7g114070 Medicago truncatula HOM05D003567 ORTHO05D004117 2.1e-06 56.2 45 60.0
Sopen02g034720 Solanum pennellii HOM05D003567 ORTHO05D004117 2.1e-06 56.2 42 69.0
PGSC0003DMG400010083 Solanum tuberosum HOM05D003567 ORTHO05D004117 2.1e-06 56.2 42 69.0
Aqoxy2G03161 Aquilegia oxysepala HOM05D003567 ORTHO05D004117 2.7e-06 55.8 66 48.5
Migut.L01512 Erythranthe guttata HOM05D003567 ORTHO05D004117 2.7e-06 55.8 45 62.2
Lj9A677T42 Lonicera japonica HOM05D003567 ORTHO05D004117 2.7e-06 55.8 73 50.7
SalBow1G3301 Salvia bowleyana HOM05D003567 ORTHO05D004117 2.7e-06 55.8 48 58.3
Ciclev10001775m.g Citrus clementina HOM05D003567 ORTHO05D004117 3.5e-06 55.5 45 60.0
ECA246G1301 Erigeron canadensis HOM05D003567 ORTHO05D004117 3.5e-06 55.5 49 61.2
Psat3g009280 Pisum sativum HOM05D003567 ORTHO05D004117 3.5e-06 55.5 63 50.8
Nitab4.5_0000327g0090 Nicotiana tabacum HOM05D003567 ORTHO05D004117 4.6e-06 55.1 42 66.7
Nitab4.5_0008257g0040 Nicotiana tabacum HOM05D003567 ORTHO05D004117 4.6e-06 55.1 42 66.7
PSO302G0180 Papaver somniferum HOM05D003567 ORTHO05D004117 4.6e-06 55.1 67 49.3
CDE05G1895 Ceratophyllum demersum HOM05D003567 ORTHO05D004117 6.0e-06 54.7 48 58.3
HanXRQChr16g0512311 Helianthus annuus HOM05D003567 ORTHO05D004117 7.9e-06 54.3 43 62.8
PSO302G0281 Papaver somniferum HOM05D003567 ORTHO05D004117 7.9e-06 54.3 44 63.6


User provided reference genes

Program Settings