Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g190310 Amaranthus hybridus HOM05D004232 ORTHO05D004909 3.3e-39 164.5 77 100.0
AUR62000901 Chenopodium quinoa HOM05D004232 ORTHO05D004909 5.3e-29 130.6 70 81.4
Ah.06g190350 Amaranthus hybridus HOM05D004232 ORTHO05D001990 1.2e-28 129.4 63 92.1
AUR62005074 Chenopodium quinoa HOM05D004232 ORTHO05D004909 3.4e-28 127.9 70 78.6
EL10Ac1g00573 Beta vulgaris HOM05D004232 ORTHO05D004909 1.7e-27 125.6 69 76.8
Hund21619 Selenicereus undatus HOM05D004232 ORTHO05D004909 3.2e-26 121.3 70 70.0
QL02p091766 Quercus lobata HOM05D004232 ORTHO05D004909 2.1e-25 118.6 68 73.5
Cfa020866 Carpinus fangiana HOM05D004232 ORTHO05D004909 6.0e-25 117.1 68 72.1
Haze_19292 Corylus avellana HOM05D004232 ORTHO05D004909 6.0e-25 117.1 68 72.1
Manes.06G039700 Manihot esculenta HOM05D004232 ORTHO05D004909 6.0e-25 117.1 69 69.6
CiPaw.15G171200 Carya illinoinensis HOM05D004232 ORTHO05D004909 7.9e-25 116.7 70 68.6
ClCG06G012120 Citrullus lanatus HOM05D004232 ORTHO05D004909 8.7e-24 113.2 70 67.1
Gohir.A06G096400 Gossypium hirsutum HOM05D004232 ORTHO05D004909 1.1e-23 112.8 67 70.1
Gohir.D06G096600 Gossypium hirsutum HOM05D004232 ORTHO05D004909 1.1e-23 112.8 67 70.1
Gorai.010G111300 Gossypium raimondii HOM05D004232 ORTHO05D004909 1.1e-23 112.8 67 70.1
Sabra18G0095700 Salix brachista HOM05D004232 ORTHO05D004909 1.5e-23 112.5 70 64.3
Dinv41413 Davidia involucrata HOM05D004232 ORTHO05D004909 1.9e-23 112.1 70 70.0
MD15G1157400 Malus domestica HOM05D004232 ORTHO05D004909 1.9e-23 112.1 68 67.6
Prupe.7G257900 Prunus persica HOM05D004232 ORTHO05D004909 1.9e-23 112.1 68 69.1
Lsat_1_v5_gn_8_77581 Lactuca sativa HOM05D004232 ORTHO05D004909 2.5e-23 111.7 67 68.7
Duzib168G1849 Durio zibethinus HOM05D004232 ORTHO05D004909 3.3e-23 111.3 68 69.1
arahy.Tifrunner.gnm1.ann1.TW5YT9 Arachis hypogaea HOM05D004232 ORTHO05D004909 4.3e-23 110.9 69 71.0
Sed0012168 Sechium edule HOM05D004232 ORTHO05D004909 4.3e-23 110.9 70 65.7
SGA_v2.0_scaffold387G50524 Striga asiatica HOM05D004232 ORTHO05D004909 4.3e-23 110.9 66 69.7
arahy.Tifrunner.gnm1.ann1.BI9JLD Arachis hypogaea HOM05D004232 ORTHO05D004909 5.7e-23 110.5 69 69.6
Ca_21603_v3 Cicer arietinum L. HOM05D004232 ORTHO05D004909 5.7e-23 110.5 70 67.1
MD02G1011700 Malus domestica HOM05D004232 ORTHO05D004909 7.4e-23 110.2 67 68.7
Eucgr.C00403 Eucalyptus grandis HOM05D004232 ORTHO05D004909 1.6e-22 109.0 69 66.7
HanXRQChr05g0141511 Helianthus annuus HOM05D004232 ORTHO05D004909 1.6e-22 109.0 67 70.1
CsaV3_1G028610 Cucumis sativus L. HOM05D004232 ORTHO05D004909 2.1e-22 108.6 70 64.3
DCAR_019365 Daucus carota HOM05D004232 ORTHO05D004909 2.1e-22 108.6 69 66.7
Medtr4g116900 Medicago truncatula HOM05D004232 ORTHO05D004909 2.1e-22 108.6 70 64.3
Thecc.09G036600 Theobroma cacao HOM05D004232 ORTHO05D004909 2.8e-22 108.2 68 67.6
TPR.G15784 Trifolium pratense HOM05D004232 ORTHO05D004909 3.7e-22 107.8 70 67.1
TWI34G2022 Tripterygium wilfordii HOM05D004232 ORTHO05D004909 3.7e-22 107.8 68 64.7
MELO3C010252.2 Cucumis melo HOM05D004232 ORTHO05D004909 4.8e-22 107.5 70 64.3
Nn8g39758 Nelumbo nucifera HOM05D004232 ORTHO05D004909 6.3e-22 107.1 70 62.9
Psat4g032960 Pisum sativum HOM05D004232 ORTHO05D004909 6.3e-22 107.1 70 62.9
Potri.018G112500 Populus trichocarpa HOM05D004232 ORTHO05D004909 6.3e-22 107.1 70 62.9
vmacro21873 Vaccinium macrocarpon HOM05D004232 ORTHO05D004909 6.3e-22 107.1 68 61.8
Nitab4.5_0000700g0080 Nicotiana tabacum HOM05D004232 ORTHO05D004909 8.2e-22 106.7 69 66.7
PGSC0003DMG400023181 Solanum tuberosum HOM05D004232 ORTHO05D004909 1.4e-21 105.9 69 66.7
Atru.chr7.187 Acer truncatum HOM05D004232 ORTHO05D004909 1.8e-21 105.5 69 65.2
CSS0000460 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 1.8e-21 105.5 70 61.4
FvH4_1g01460 Fragaria vesca HOM05D004232 ORTHO05D004909 1.8e-21 105.5 68 63.2
FAN19G1911 Fragaria x ananassa HOM05D004232 ORTHO05D004909 1.8e-21 105.5 68 63.2
FAN23G0432 Fragaria x ananassa HOM05D004232 ORTHO05D004909 1.8e-21 105.5 68 63.2
FAN26G2384 Fragaria x ananassa HOM05D004232 ORTHO05D004909 1.8e-21 105.5 68 63.2
Lj4g0017422 Lotus japonicus HOM05D004232 ORTHO05D004909 1.8e-21 105.5 68 67.6
Actinidia04264 Actinidia chinensis HOM05D004232 ORTHO05D004909 2.4e-21 105.1 70 62.9
Nitab4.5_0000059g0500 Nicotiana tabacum HOM05D004232 ORTHO05D004909 2.4e-21 105.1 69 65.2
RcHm_v2.0_Chr2g0086391 Rosa chinensis HOM05D004232 ORTHO05D004909 5.3e-21 104.0 68 64.7
CANSAT11G0555 Cannabis sativa HOM05D004232 ORTHO05D004909 6.9e-21 103.6 68 61.8
FAN28G1469 Fragaria x ananassa HOM05D004232 ORTHO05D004909 6.9e-21 103.6 68 61.8
Glyma.13G156300 Glycine max HOM05D004232 ORTHO05D004909 6.9e-21 103.6 69 63.8
Solyc02g014460.4 Solanum lycopersicum HOM05D004232 ORTHO05D004909 6.9e-21 103.6 69 65.2
Sopen02g003100 Solanum pennellii HOM05D004232 ORTHO05D004909 6.9e-21 103.6 69 65.2
MSTRG.26306 Avicennia marina HOM05D004232 ORTHO05D004909 1.2e-20 102.8 67 65.7
Nn2g12267 Nelumbo nucifera HOM05D004232 ORTHO05D004909 1.2e-20 102.8 70 64.3
PSO063G1432 Papaver somniferum HOM05D004232 ORTHO05D004909 1.5e-20 102.4 69 66.7
PGR142G1232 Punica granatum HOM05D004232 ORTHO05D004909 1.5e-20 102.4 68 63.2
Glyma.17G103900 Glycine max HOM05D004232 ORTHO05D004909 2.0e-20 102.1 69 63.8
Ciclev10007957m.g Citrus clementina HOM05D004232 ORTHO05D004909 4.5e-20 100.9 69 62.3
Lalb_Chr07g0179621 Lupinus albus HOM05D004232 ORTHO05D004909 5.9e-20 100.5 68 63.2
Peaxi162Scf00113g00410 Petunia axillaris HOM05D004232 ORTHO05D004909 5.9e-20 100.5 69 63.8
GSVIVG01001050001 Vitis vinifera HOM05D004232 ORTHO05D004909 5.9e-20 100.5 67 61.2
ATR0629G098 Amborella trichopoda HOM05D004232 ORTHO05D004909 1.3e-19 99.4 70 61.4
THA.LOC104808932 Tarenaya hassleriana HOM05D004232 ORTHO05D004909 1.3e-19 99.4 67 59.7
Ah.12g062460 Amaranthus hybridus HOM05D004232 ORTHO05D004909 1.7e-19 99.0 72 58.3
ECA236G3428 Erigeron canadensis HOM05D004232 ORTHO05D004909 2.2e-19 98.6 67 59.7
Migut.K00358 Erythranthe guttata HOM05D004232 ORTHO05D004909 2.9e-19 98.2 69 62.3
COL.COLO4_17524 Corchorus olitorius HOM05D004232 ORTHO05D004909 3.8e-19 97.8 67 59.7
Lj9A711T51 Lonicera japonica HOM05D004232 ORTHO05D004909 3.8e-19 97.8 68 61.8
Sc08g0005080 Simmondsia chinensis HOM05D004232 ORTHO05D004909 3.8e-19 97.8 57 64.9
TAR625G0697 Trochodendron aralioides HOM05D004232 ORTHO05D004909 3.8e-19 97.8 69 59.4
Cc06_g23400 Coffea canephora HOM05D004232 ORTHO05D004909 5.0e-19 97.4 69 59.4
Cc06_g23430 Coffea canephora HOM05D004232 ORTHO05D004909 5.0e-19 97.4 69 59.4
Glyma.13G156200 Glycine max HOM05D004232 ORTHO05D004909 6.5e-19 97.1 69 59.4
VMungo1215G2079 Vigna mungo HOM05D004232 ORTHO05D004909 8.5e-19 96.7 69 59.4
Rhsim01G0048900 Rhododendron simsii HOM05D004232 ORTHO05D004909 3.2e-18 94.7 63 63.5
AL2G40720 Arabidopsis lyrata HOM05D004232 ORTHO05D004909 5.5e-18 94.0 68 52.9
Phvul.003G175900 Phaseolus vulgaris HOM05D004232 ORTHO05D004909 7.2e-18 93.6 69 58.0
Actinidia04270 Actinidia chinensis HOM05D004232 ORTHO05D004909 1.2e-17 92.8 70 60.0
Rhsim01G0048400 Rhododendron simsii HOM05D004232 ORTHO05D004909 1.2e-17 92.8 68 51.5
AT1G80710 Arabidopsis thaliana HOM05D004232 ORTHO05D004909 1.6e-17 92.4 68 51.5
Thhalv10018400m.g Eutrema salsugineum HOM05D004232 ORTHO05D004909 1.6e-17 92.4 67 55.2
Rhsim01G0048700 Rhododendron simsii HOM05D004232 ORTHO05D004909 2.1e-17 92.0 66 54.5
ATR0629G041 Amborella trichopoda HOM05D004232 ORTHO05D004909 2.7e-17 91.7 70 60.0
HPP92_023808 Vanilla planifolia HOM05D004232 ORTHO05D004909 2.7e-17 91.7 70 54.3
Aqoxy7G03502 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 3.6e-17 91.3 70 60.0
Dinv42900 Davidia involucrata HOM05D004232 ORTHO05D004909 3.6e-17 91.3 69 58.0
Dinv43201 Davidia involucrata HOM05D004232 ORTHO05D004909 3.6e-17 91.3 69 58.0
QL05p007864 Quercus lobata HOM05D004232 ORTHO05D004909 3.6e-17 91.3 67 61.2
Carub.0002s2684 Capsella rubella HOM05D004232 ORTHO05D004909 4.6e-17 90.9 67 50.7
Lsat_1_v5_gn_8_59400 Lactuca sativa HOM05D004232 ORTHO05D004909 4.6e-17 90.9 67 50.7
Sp5g35040 Schrenkiella parvula HOM05D004232 ORTHO05D004909 4.6e-17 90.9 68 55.9
Oeu051700.1 Olea europaea HOM05D004232 ORTHO05D004909 6.1e-17 90.5 64 64.1
BcaC08g47552 Brassica carinata HOM05D004232 ORTHO05D004909 7.9e-17 90.1 68 54.4
C06p53760 Brassica napus HOM05D004232 ORTHO05D004909 7.9e-17 90.1 68 55.9
CARHR073800 Cardamine hirsuta HOM05D004232 ORTHO05D004909 1.3e-16 89.4 67 50.7
Aa31LG1G2250 Aethionema arabicum HOM05D004232 ORTHO05D004909 1.8e-16 89.0 62 59.7
Medtr4g116910 Medicago truncatula HOM05D004232 ORTHO05D004909 1.8e-16 89.0 70 58.6
BraA07t32003Z Brassica rapa HOM05D004232 ORTHO05D004909 3.0e-16 88.2 68 52.9
CARHR073790 Cardamine hirsuta HOM05D004232 ORTHO05D004909 3.9e-16 87.8 68 50.0
BcaC08g47551 Brassica carinata HOM05D004232 ORTHO05D004909 5.1e-16 87.4 68 52.9
A07p44980 Brassica napus HOM05D004232 ORTHO05D004909 5.1e-16 87.4 68 52.9
BolC6t40394H Brassica oleracea HOM05D004232 ORTHO05D004909 5.1e-16 87.4 68 52.9
Rhsim01G0048800 Rhododendron simsii HOM05D004232 ORTHO05D004909 6.7e-16 87.0 68 51.5
Gohir.A06G096200 Gossypium hirsutum HOM05D004232 ORTHO05D004909 8.7e-16 86.7 67 53.7
Gohir.D06G096401 Gossypium hirsutum HOM05D004232 ORTHO05D004909 8.7e-16 86.7 67 53.7
Gorai.010G111100 Gossypium raimondii HOM05D004232 ORTHO05D004909 8.7e-16 86.7 67 53.7
TPR.G15793 Trifolium pratense HOM05D004232 ORTHO05D004909 2.5e-15 85.1 70 57.1
HanXRQChr12g0386031 Helianthus annuus HOM05D004232 ORTHO05D004909 5.7e-15 84.0 66 50.0
Migut.G00058 Erythranthe guttata HOM05D004232 ORTHO05D004909 2.2e-14 82.0 69 47.8
Aqoxy7G03504 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 1.4e-13 79.3 68 52.9
ECA234G1449 Erigeron canadensis HOM05D004232 ORTHO05D004909 5.3e-13 77.4 75 48.0
A09p17420 Brassica napus HOM05D004232 ORTHO05D004909 6.9e-13 77.0 75 44.0
Os08g0282500 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 1.2e-12 76.3 74 50.0
BcaB07g31225 Brassica carinata HOM05D004232 ORTHO05D004909 1.5e-12 75.9 75 41.3
C09p21710 Brassica napus HOM05D004232 ORTHO05D004909 2.0e-12 75.5 75 42.7
BolC9t55076H Brassica oleracea HOM05D004232 ORTHO05D004909 2.0e-12 75.5 75 42.7
BraA09t37368Z Brassica rapa HOM05D004232 ORTHO05D004909 2.0e-12 75.5 75 42.7
BcaC04g22248 Brassica carinata HOM05D004232 ORTHO05D004909 5.9e-12 73.9 75 42.7
SMO364G0327 Selaginella moellendorffii HOM05D004232 ORTHO05D004909 1.0e-11 73.2 67 43.3
SEGI_24126 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 1.0e-11 73.2 67 47.8
Os08g0285200 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 1.3e-11 72.8 74 45.9
TPR.G29050 Trifolium pratense HOM05D004232 ORTHO05D004909 1.3e-11 72.8 57 54.4
TWI63G0539 Tripterygium wilfordii HOM05D004232 ORTHO05D004909 1.9e-10 68.9 74 40.5
BolC6t40395H Brassica oleracea HOM05D004232 ORTHO05D004909 2.6e-07 58.5 55 43.6
Cpa.g.sc46.108 Carica papaya HOM05D004232 ORTHO05D004909 2.6e-07 58.5 63 47.6
Nitab4.5_0011109g0010 Nicotiana tabacum HOM05D004232 ORTHO05D004909 2.8e-06 55.1 95 32.6
Peaxi162Scf00155g00514 Petunia axillaris HOM05D004232 ORTHO05D004909 4.8e-06 54.3 83 32.5


User provided reference genes

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