Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g189770 Amaranthus hybridus HOM05D006406 ORTHO05D007883 2.0e-162 575.9 319 100.0
EL10Ac4g09916 Beta vulgaris HOM05D006406 ORTHO05D007883 3.4e-122 442.2 264 79.2
AUR62000764 Chenopodium quinoa HOM05D006406 ORTHO05D007883 1.3e-121 440.3 264 78.4
Hund07096 Selenicereus undatus HOM05D006406 ORTHO05D007883 4.3e-109 398.7 265 71.7
Sc16g0008820 Simmondsia chinensis HOM05D006406 ORTHO05D007883 9.6e-109 397.5 270 68.9
Cfa006628 Carpinus fangiana HOM05D006406 ORTHO05D007883 3.4e-106 389.0 268 70.5
Haze_04140 Corylus avellana HOM05D006406 ORTHO05D007883 4.9e-105 385.2 268 69.4
MD04G1200800 Malus domestica HOM05D006406 ORTHO05D007883 2.4e-104 382.9 268 69.4
AUR62005205 Chenopodium quinoa HOM05D006406 ORTHO05D007883 1.8e-102 376.7 274 69.7
FAN14G3705 Fragaria x ananassa HOM05D006406 ORTHO05D007883 1.8e-102 376.7 264 68.2
Nitab4.5_0003844g0020 Nicotiana tabacum HOM05D006406 ORTHO05D007883 2.3e-102 376.3 275 66.2
Sabra13G0015900 Salix brachista HOM05D006406 ORTHO05D007883 6.7e-102 374.8 274 66.1
CiPaw.08G161900 Carya illinoinensis HOM05D006406 ORTHO05D007883 1.1e-101 374.0 268 67.2
Manes.08G117600 Manihot esculenta HOM05D006406 ORTHO05D007883 1.1e-101 374.0 266 66.9
Nitab4.5_0003658g0090 Nicotiana tabacum HOM05D006406 ORTHO05D007883 1.1e-101 374.0 275 65.1
QL03p021882 Quercus lobata HOM05D006406 ORTHO05D007883 1.9e-101 373.2 269 66.5
RcHm_v2.0_Chr3g0455711 Rosa chinensis HOM05D006406 ORTHO05D007883 1.9e-101 373.2 267 66.7
GSVIVG01031144001 Vitis vinifera HOM05D006406 ORTHO05D007883 1.9e-101 373.2 267 66.7
QL03p020986 Quercus lobata HOM05D006406 ORTHO05D007883 3.3e-101 372.5 269 66.5
THA.LOC104818716 Tarenaya hassleriana HOM05D006406 ORTHO05D007883 3.3e-101 372.5 268 67.9
TPR.G33225 Trifolium pratense HOM05D006406 ORTHO05D007883 3.3e-101 372.5 264 66.3
Potri.013G017100 Populus trichocarpa HOM05D006406 ORTHO05D007883 4.3e-101 372.1 276 64.5
Hma1.2p1_1212F.1_g267260 Hydrangea macrophylla HOM05D006406 ORTHO05D007883 9.6e-101 370.9 266 67.7
Aqoxy5G00730 Aquilegia oxysepala HOM05D006406 ORTHO05D007883 1.6e-100 370.2 273 65.6
COL.COLO4_10518 Corchorus olitorius HOM05D006406 ORTHO05D007883 1.6e-100 370.2 268 66.0
Sabra13G0020100 Salix brachista HOM05D006406 ORTHO05D007883 1.6e-100 370.2 276 64.5
PGR083G2713 Punica granatum HOM05D006406 ORTHO05D007883 2.1e-100 369.8 270 65.9
Ca_05800_v3 Cicer arietinum L. HOM05D006406 ORTHO05D007883 8.1e-100 367.9 264 65.2
Hund07097 Selenicereus undatus HOM05D006406 ORTHO05D007883 8.1e-100 367.9 263 66.9
Glyma.03G235700 Glycine max HOM05D006406 ORTHO05D007883 1.1e-99 367.5 265 66.8
Peaxi162Scf00037g01125 Petunia axillaris HOM05D006406 ORTHO05D007883 1.4e-99 367.1 275 65.8
Eucgr.B01914 Eucalyptus grandis HOM05D006406 ORTHO05D007883 1.8e-99 366.7 288 63.5
Prupe.6G320900 Prunus persica HOM05D006406 ORTHO05D007883 1.8e-99 366.7 270 65.6
CAN.G1459.10 Capsicum annuum HOM05D006406 ORTHO05D007883 2.4e-99 366.3 275 65.5
Solyc01g099700.3 Solanum lycopersicum HOM05D006406 ORTHO05D007883 3.1e-99 365.9 274 63.9
Sopen01g043220 Solanum pennellii HOM05D006406 ORTHO05D007883 3.1e-99 365.9 274 63.9
MBI18_g46420_MAGBIO Magnolia biondii HOM05D006406 ORTHO05D007883 4.0e-99 365.5 266 64.3
Ciclev10001711m.g Citrus clementina HOM05D006406 ORTHO05D007883 5.3e-99 365.2 269 64.7
PGSC0003DMG400007542 Solanum tuberosum HOM05D006406 ORTHO05D007883 9.0e-99 364.4 276 64.9
Medtr7g112650 Medicago truncatula HOM05D006406 ORTHO05D007883 1.2e-98 364.0 264 64.4
FAN05G5419 Fragaria x ananassa HOM05D006406 ORTHO05D007883 2.0e-98 363.2 260 66.9
Atru.chr2.29 Acer truncatum HOM05D006406 ORTHO05D007883 2.6e-98 362.8 267 64.0
Cpa.g.sc48.95 Carica papaya HOM05D006406 ORTHO05D007883 3.4e-98 362.5 264 64.8
TWI12G0288 Tripterygium wilfordii HOM05D006406 ORTHO05D007883 3.4e-98 362.5 264 66.7
Lj9C146T2 Lonicera japonica HOM05D006406 ORTHO05D007883 4.5e-98 362.1 276 64.9
Rhsim07G0188300 Rhododendron simsii HOM05D006406 ORTHO05D007883 4.5e-98 362.1 268 66.0
SalBow7G2778 Salvia bowleyana HOM05D006406 ORTHO05D007883 5.8e-98 361.7 267 65.9
Phvul.006G089700 Phaseolus vulgaris HOM05D006406 ORTHO05D007883 1.0e-97 360.9 264 65.9
Duzib177G0190 Durio zibethinus HOM05D006406 ORTHO05D007883 1.3e-97 360.5 264 65.5
Oeu043348.1 Olea europaea HOM05D006406 ORTHO05D007883 1.3e-97 360.5 264 66.3
Psat0s27g0120 Pisum sativum HOM05D006406 ORTHO05D007883 1.7e-97 360.1 264 64.0
TAR633G0157 Trochodendron aralioides HOM05D006406 ORTHO05D007883 2.2e-97 359.8 279 63.4
VMungo0540G0116 Vigna mungo HOM05D006406 ORTHO05D007883 3.8e-97 359.0 267 65.9
CsaV3_1G038840 Cucumis sativus L. HOM05D006406 ORTHO05D007883 6.5e-97 358.2 265 64.9
Lalb_Chr18g0045761 Lupinus albus HOM05D006406 ORTHO05D007883 6.5e-97 358.2 267 65.9
Thecc.05G312900 Theobroma cacao HOM05D006406 ORTHO05D007883 8.4e-97 357.8 269 63.9
Nn4g25830 Nelumbo nucifera HOM05D006406 ORTHO05D007883 4.2e-96 355.5 282 61.0
vmacro04816 Vaccinium macrocarpon HOM05D006406 ORTHO05D007883 4.2e-96 355.5 276 64.1
CANSAT54G1062 Cannabis sativa HOM05D006406 ORTHO05D007883 7.1e-96 354.8 268 63.4
AT5G27710 Arabidopsis thaliana HOM05D006406 ORTHO05D007883 6.0e-95 351.7 271 63.1
Lj1g0022852 Lotus japonicus HOM05D006406 ORTHO05D007883 6.0e-95 351.7 264 62.9
Gorai.013G125700 Gossypium raimondii HOM05D006406 ORTHO05D007883 7.9e-95 351.3 264 62.1
Migut.N01744 Erythranthe guttata HOM05D006406 ORTHO05D007883 1.3e-94 350.5 267 64.4
Gohir.A13G109200 Gossypium hirsutum HOM05D006406 ORTHO05D007883 1.8e-94 350.1 264 61.7
AL6G39250 Arabidopsis lyrata HOM05D006406 ORTHO05D007883 2.3e-94 349.7 271 62.7
arahy.Tifrunner.gnm1.ann1.Q6XDLT Arachis hypogaea HOM05D006406 ORTHO05D007883 3.0e-94 349.4 264 62.1
Carub.0006s2486 Capsella rubella HOM05D006406 ORTHO05D007883 3.9e-94 349.0 268 63.1
CARHR186230 Cardamine hirsuta HOM05D006406 ORTHO05D007883 6.7e-94 348.2 271 61.3
Aa31LG11G9460 Aethionema arabicum HOM05D006406 ORTHO05D007883 8.7e-94 347.8 271 61.3
HanXRQChr11g0339311 Helianthus annuus HOM05D006406 ORTHO05D007883 1.5e-93 347.1 270 63.7
Gohir.D13G112000 Gossypium hirsutum HOM05D006406 ORTHO05D007883 1.9e-93 346.7 264 61.4
Sp2g20880 Schrenkiella parvula HOM05D006406 ORTHO05D007883 3.3e-93 345.9 269 62.1
ClCG03G017120 Citrullus lanatus HOM05D006406 ORTHO05D007883 5.7e-93 345.1 264 61.7
Actinidia35561 Actinidia chinensis HOM05D006406 ORTHO05D007883 7.4e-93 344.7 270 64.4
TWI36G0652 Tripterygium wilfordii HOM05D006406 ORTHO05D007883 7.4e-93 344.7 264 62.5
arahy.Tifrunner.gnm1.ann1.PP7FUY Arachis hypogaea HOM05D006406 ORTHO05D007883 1.3e-92 344.0 264 61.0
SGA_v2.0_scaffold172G38986 Striga asiatica HOM05D006406 ORTHO05D007883 8.2e-92 341.3 264 64.0
unitig_52.g17112 Utricularia gibba HOM05D006406 ORTHO05D007883 1.4e-91 340.5 269 62.5
Sed0006495 Sechium edule HOM05D006406 ORTHO05D007883 1.8e-91 340.1 270 61.9
Thhalv10005730m.g Eutrema salsugineum HOM05D006406 ORTHO05D007883 5.3e-91 338.6 271 60.9
ECA236G2290 Erigeron canadensis HOM05D006406 ORTHO05D007883 5.0e-89 332.0 247 62.3
BraA09t36179Z Brassica rapa HOM05D006406 ORTHO05D007883 1.1e-88 330.9 273 59.7
PSO210G1514 Papaver somniferum HOM05D006406 ORTHO05D007883 1.1e-88 330.9 269 61.0
PSO210G1688 Papaver somniferum HOM05D006406 ORTHO05D007883 1.1e-88 330.9 268 60.8
A09p05410 Brassica napus HOM05D006406 ORTHO05D007883 2.5e-88 329.7 273 59.3
BcaB04g19684 Brassica carinata HOM05D006406 ORTHO05D007883 1.6e-87 327.0 274 59.1
Cc02_g34120 Coffea canephora HOM05D006406 ORTHO05D007883 3.0e-86 322.8 187 77.5
CDE11G0411 Ceratophyllum demersum HOM05D001335 ORTHO05D001184 3.9e-86 322.4 275 56.4
Dinv30810 Davidia involucrata HOM05D006406 ORTHO05D007883 3.9e-86 322.4 237 64.1
BcaC04g23642 Brassica carinata HOM05D006406 ORTHO05D007883 3.3e-85 319.3 271 58.7
Os07g0673000 Oryza sativa ssp. japonica HOM05D006406 ORTHO05D007883 3.3e-85 319.3 235 61.7
Lsat_1_v5_gn_9_88181 Lactuca sativa HOM05D006406 ORTHO05D007883 4.3e-85 318.9 281 57.7
C09p05890 Brassica napus HOM05D006406 ORTHO05D007883 4.8e-84 315.5 272 58.8
BolC9t53515H Brassica oleracea HOM05D006406 ORTHO05D007883 4.8e-84 315.5 272 58.8
ATR0796G153 Amborella trichopoda HOM05D006406 ORTHO05D007883 1.7e-81 307.0 250 58.4
CSS0003718 Camellia sinensis var. sinensis HOM05D006406 ORTHO05D007883 1.7e-81 307.0 264 58.0
Glyma.19G233500 Glycine max HOM05D006406 ORTHO05D007883 8.5e-81 304.7 237 63.7
SEGI_05797 Sequoiadendron giganteum HOM05D006406 ORTHO05D007883 8.2e-76 288.1 272 53.7
DCAR_029393 Daucus carota HOM05D006406 ORTHO05D007883 1.4e-72 277.3 284 51.4
FvH4_6g06560 Fragaria vesca HOM05D006406 ORTHO05D007883 5.1e-70 268.9 200 66.0
MELO3C015308.2 Cucumis melo HOM05D006406 ORTHO05D007883 4.4e-69 265.8 299 48.2
SMO172G0153 Selaginella moellendorffii HOM05D006406 ORTHO05D007883 1.1e-61 241.1 269 46.1
Zm00001eb111280 Zea mays HOM05D006406 ORTHO05D007883 3.3e-61 239.6 203 59.1
Mapoly0054s0047 Marchantia polymorpha HOM05D006406 ORTHO05D007883 1.8e-59 233.8 268 45.9
SMO172G0232 Selaginella moellendorffii HOM05D006406 ORTHO05D007883 3.1e-59 233.0 270 45.2
Pp3c6_26830 Physcomitrium patens HOM05D006406 ORTHO05D007883 1.2e-58 231.1 237 46.4
Hma1.2p1_1212F.1_g267270 Hydrangea macrophylla HOM05D006406 ORTHO05D007883 5.9e-58 228.8 180 64.4
PGSC0003DMG400024710 Solanum tuberosum HOM05D006406 ORTHO05D007883 6.5e-57 225.3 180 63.3
Oeu043349.1 Olea europaea HOM05D006406 ORTHO05D007883 1.8e-54 217.2 178 62.4
CBR_g19246 Chara braunii HOM05D006406 ORTHO05D007883 2.7e-50 203.4 214 44.9
SMO198G0100 Selaginella moellendorffii HOM05D006406 ORTHO05D007883 2.5e-48 196.8 273 39.2
HPP92_011843 Vanilla planifolia HOM05D006406 ORTHO05D007883 2.2e-44 183.7 260 41.2
arahy.Tifrunner.gnm1.ann1.AST3BR Arachis hypogaea HOM05D006406 ORTHO05D007883 7.3e-40 168.7 157 51.0
PSO421G0497 Papaver somniferum HOM05D006406 ORTHO05D007883 7.3e-40 168.7 261 37.5
MSTRG.16393 Avicennia marina HOM05D006406 ORTHO05D007883 2.8e-31 140.2 133 57.9
AagrBONN_evm.TU.Sc2ySwM_362.2555 Anthoceros agrestis HOM05D006406 ORTHO05D007883 3.6e-23 113.2 91 51.6
FAN02G3513 Fragaria x ananassa HOM05D006406 ORTHO05D007883 6.2e-23 112.5 103 57.3
BcaB07g32734 Brassica carinata HOM05D006406 ORTHO05D007883 5.2e-14 82.8 104 45.2
Lsat_1_v5_gn_5_186620 Lactuca sativa HOM05D006406 ORTHO05D007883 7.1e-11 72.4 114 39.5
AL3G41450 Arabidopsis lyrata HOM05D000059 ORTHO05D000128 1.3e-09 68.2 41 73.2
Cre09.g392700 Chlamydomonas reinhardtii HOM05D006406 ORTHO05D007883 2.8e-07 60.5 101 39.6
SMO172G0225 Selaginella moellendorffii HOM05D006406 ORTHO05D007883 1.8e-06 57.8 96 40.6


User provided reference genes

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