Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g189270 Amaranthus hybridus HOM05D006048 ORTHO05D007642 0.0e+00 1557.7 790 100.0
EL10Ac4g09343 Beta vulgaris HOM05D006048 ORTHO05D007642 7.9e-221 771.2 975 48.8
AUR62000837 Chenopodium quinoa HOM05D006048 ORTHO05D007642 8.8e-212 741.1 822 53.5
AUR62005136 Chenopodium quinoa HOM05D006048 ORTHO05D007642 8.5e-199 698.0 611 61.5
Hund07062 Selenicereus undatus HOM05D006048 ORTHO05D007642 8.0e-165 585.1 905 42.7
Sc06g0003370 Simmondsia chinensis HOM05D006048 ORTHO05D007642 1.1e-132 478.4 935 37.0
Actinidia23630 Actinidia chinensis HOM05D006048 ORTHO05D007642 4.6e-104 383.3 706 36.8
CSS0040601 Camellia sinensis var. sinensis HOM05D006048 ORTHO05D007642 7.4e-102 375.9 640 37.3
Cfa006579 Carpinus fangiana HOM05D006048 ORTHO05D007642 3.4e-99 367.1 696 36.5
GSVIVG01000040001 Vitis vinifera HOM05D006048 ORTHO05D007642 3.8e-98 363.6 520 43.1
TAR636G0181 Trochodendron aralioides HOM05D006048 ORTHO05D007642 6.5e-98 362.8 961 33.0
Actinidia05707 Actinidia chinensis HOM05D006048 ORTHO05D007642 7.2e-97 359.4 647 37.1
Haze_04204 Corylus avellana HOM05D006048 ORTHO05D007642 7.2e-97 359.4 640 37.0
QL03p006882 Quercus lobata HOM05D006048 ORTHO05D007642 9.4e-97 359.0 643 38.1
Hma1.2p1_0928F.1_g237870 Hydrangea macrophylla HOM05D006048 ORTHO05D007642 1.3e-93 348.6 641 37.3
Ciclev10000202m.g Citrus clementina HOM05D006048 ORTHO05D007642 2.0e-91 341.3 655 35.7
TWI12G1173 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 2.6e-91 340.9 577 38.3
Potri.005G034100 Populus trichocarpa HOM05D006048 ORTHO05D007642 2.9e-90 337.4 699 35.1
Prupe.6G327100 Prunus persica HOM05D006048 ORTHO05D007642 2.5e-89 334.3 715 34.8
TWI56G0330 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 2.5e-89 334.3 763 34.6
Sabra13G0025400 Salix brachista HOM05D006048 ORTHO05D007642 1.0e-87 328.9 653 36.8
Potri.013G023600 Populus trichocarpa HOM05D006048 ORTHO05D007642 1.4e-87 328.6 649 37.1
COL.COLO4_13482 Corchorus olitorius HOM05D006048 ORTHO05D007642 2.0e-86 324.7 844 32.0
Gohir.A11G264200 Gossypium hirsutum HOM05D006048 ORTHO05D007642 7.4e-86 322.8 679 34.8
Dinv23949 Davidia involucrata HOM05D006048 ORTHO05D007642 3.7e-85 320.5 650 35.7
Rhsim07G0182400 Rhododendron simsii HOM05D006048 ORTHO05D007642 8.2e-85 319.3 695 35.0
Gorai.007G296200 Gossypium raimondii HOM05D006048 ORTHO05D007642 1.4e-84 318.5 569 37.3
Gohir.D11G274400 Gossypium hirsutum HOM05D006048 ORTHO05D007642 1.8e-84 318.2 675 34.7
Sabra05G0036000 Salix brachista HOM05D006048 ORTHO05D007642 2.4e-84 317.8 699 33.6
Migut.B01039 Erythranthe guttata HOM05D006048 ORTHO05D007642 3.1e-84 317.4 648 34.3
Oeu017488.1 Olea europaea HOM05D006048 ORTHO05D007642 2.0e-83 314.7 660 36.1
Medtr1g082840 Medicago truncatula HOM05D006048 ORTHO05D007642 5.9e-83 313.2 946 30.3
Manes.09G166100 Manihot esculenta HOM05D006048 ORTHO05D007642 1.0e-82 312.4 477 38.6
Nn4g26237 Nelumbo nucifera HOM05D006048 ORTHO05D007642 1.7e-82 311.6 780 31.5
Lj5g0003009 Lotus japonicus HOM05D006048 ORTHO05D007642 3.8e-82 310.5 922 30.5
Cc02_g33600 Coffea canephora HOM05D006048 ORTHO05D007642 5.0e-82 310.1 464 38.6
Nitab4.5_0008677g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 1.9e-81 308.1 515 37.3
Duzib128G0698 Durio zibethinus HOM05D006048 ORTHO05D007642 1.2e-80 305.4 672 34.8
FAN02G2040 Fragaria x ananassa HOM05D006048 ORTHO05D007642 1.2e-80 305.4 962 30.5
MD04G1206500 Malus domestica HOM05D006048 ORTHO05D007642 8.0e-80 302.8 622 35.0
Nitab4.5_0005388g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 8.0e-80 302.8 518 36.5
MD12G1220300 Malus domestica HOM05D006048 ORTHO05D007642 1.0e-79 302.4 677 32.9
Peaxi162Scf00037g00236 Petunia axillaris HOM05D006048 ORTHO05D007642 4.0e-79 300.4 508 36.8
RcHm_v2.0_Chr3g0454571 Rosa chinensis HOM05D006048 ORTHO05D007642 6.7e-79 299.7 685 34.0
Lalb_Chr21g0310721 Lupinus albus HOM05D006048 ORTHO05D007642 5.7e-78 296.6 917 30.0
Aqoxy2G03311 Aquilegia oxysepala HOM05D006048 ORTHO05D007642 1.3e-77 295.4 669 33.8
MSTRG.20430 Avicennia marina HOM05D006048 ORTHO05D007642 1.3e-77 295.4 670 32.2
Sopen01g042410 Solanum pennellii HOM05D006048 ORTHO05D007642 2.2e-77 294.7 689 31.5
Ca_10107_v3 Cicer arietinum L. HOM05D006048 ORTHO05D007642 6.3e-77 293.1 912 28.8
Nn1g02208 Nelumbo nucifera HOM05D006048 ORTHO05D007642 8.2e-77 292.7 928 29.3
CAN.G1077.18 Capsicum annuum HOM05D006048 ORTHO05D007642 1.4e-76 292.0 723 31.1
SalBow8G1366 Salvia bowleyana HOM05D006048 ORTHO05D007642 9.1e-76 289.3 892 30.6
Thecc.05G304700 Theobroma cacao HOM05D006048 ORTHO05D007642 2.0e-75 288.1 953 28.5
PGSC0003DMG401028588 Solanum tuberosum HOM05D006048 ORTHO05D007642 2.7e-75 287.7 688 31.5
FvH4_6g05680 Fragaria vesca HOM05D006048 ORTHO05D007642 3.5e-75 287.3 651 32.9
FAN05G1530 Fragaria x ananassa HOM05D006048 ORTHO05D007642 4.5e-75 287.0 711 32.1
FAN14G2795 Fragaria x ananassa HOM05D006048 ORTHO05D007642 4.5e-75 287.0 653 32.6
TPR.G6104 Trifolium pratense HOM05D006048 ORTHO05D007642 4.5e-75 287.0 844 29.7
FAN14G2991 Fragaria x ananassa HOM05D006048 ORTHO05D007642 1.3e-74 285.4 710 31.4
SGA_v2.0_scaffold172G38965 Striga asiatica HOM05D006048 ORTHO05D007642 3.8e-74 283.9 665 31.4
Solyc01g098870.3 Solanum lycopersicum HOM05D006048 ORTHO05D007642 6.5e-74 283.1 669 31.2
Glyma.20G233200 Glycine max HOM05D006048 ORTHO05D007642 8.0e-72 276.2 914 28.8
Phvul.007G180600 Phaseolus vulgaris HOM05D006048 ORTHO05D007642 2.6e-70 271.2 912 27.2
FAN09G2502 Fragaria x ananassa HOM05D006048 ORTHO05D007642 9.8e-70 269.2 649 31.3
MBI19_g16658_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 9.8e-70 269.2 505 35.8
Eucgr.H04481 Eucalyptus grandis HOM05D006048 ORTHO05D007642 4.8e-69 266.9 395 40.0
Lalb_Chr06g0167761 Lupinus albus HOM05D006048 ORTHO05D007642 1.4e-68 265.4 903 29.0
THA.LOC104805873 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 1.4e-68 265.4 733 31.2
MELO3C004275.2 Cucumis melo HOM05D006048 ORTHO05D007642 2.4e-68 264.6 718 30.4
Psat6g149640 Pisum sativum HOM05D006048 ORTHO05D007642 1.6e-67 261.9 895 28.3
CsaV3_2G005180 Cucumis sativus L. HOM05D006048 ORTHO05D007642 2.0e-67 261.5 700 30.3
ECA238G0871 Erigeron canadensis HOM05D006048 ORTHO05D007642 4.5e-67 260.4 829 29.6
Sed0020620 Sechium edule HOM05D006048 ORTHO05D007642 4.5e-67 260.4 508 32.3
Cpa.g.sc48.39 Carica papaya HOM05D006048 ORTHO05D007642 1.0e-66 259.2 571 34.7
Glyma.10G155100 Glycine max HOM05D006048 ORTHO05D007642 1.3e-66 258.8 915 27.3
VMungo0720G0675 Vigna mungo HOM05D006048 ORTHO05D007642 1.9e-65 255.0 924 27.8
ClCG02G015880 Citrullus lanatus HOM05D006048 ORTHO05D007642 3.2e-65 254.2 667 30.6
FAN05G2734 Fragaria x ananassa HOM05D006048 ORTHO05D007642 1.6e-64 251.9 674 31.3
HanXRQChr15g0463081 Helianthus annuus HOM05D006048 ORTHO05D007642 4.7e-64 250.4 905 29.3
PGR031G0290 Punica granatum HOM05D006048 ORTHO05D007642 2.0e-62 245.0 674 29.4
THA.LOC104820894 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 4.4e-62 243.8 732 31.1
PSO170G0056 Papaver somniferum HOM05D006048 ORTHO05D007642 1.3e-61 242.3 399 35.1
BcaC04g22032 Brassica carinata HOM05D006048 ORTHO05D007642 1.1e-60 239.2 525 33.0
PSO302G0271 Papaver somniferum HOM05D006048 ORTHO05D007642 1.1e-60 239.2 399 34.8
Carub.0002s0845 Capsella rubella HOM05D006048 ORTHO05D007642 3.1e-60 237.7 820 28.4
vmacro05021 Vaccinium macrocarpon HOM05D006048 ORTHO05D007642 4.1e-60 237.3 654 29.4
A09p19290 Brassica napus HOM05D006048 ORTHO05D007642 1.2e-59 235.7 875 27.8
C09p24290 Brassica napus HOM05D006048 ORTHO05D007642 2.0e-59 235.0 519 32.6
AL1G65400 Arabidopsis lyrata HOM05D006048 ORTHO05D007642 4.5e-59 233.8 938 26.5
BolC9t55346H Brassica oleracea HOM05D006048 ORTHO05D007642 4.3e-57 227.3 535 32.0
BcaB07g31106 Brassica carinata HOM05D006048 ORTHO05D007642 5.6e-57 226.9 519 31.2
Aa31LG2G11800 Aethionema arabicum HOM05D006048 ORTHO05D007642 1.2e-56 225.7 518 31.7
BraA09t37546Z Brassica rapa HOM05D006048 ORTHO05D007642 1.2e-56 225.7 886 27.3
ATR0626G180 Amborella trichopoda HOM05D006048 ORTHO05D007642 5.2e-55 220.3 320 39.4
AT1G54920 Arabidopsis thaliana HOM05D006048 ORTHO05D007642 2.2e-53 214.9 927 26.0
CARHR284550 Cardamine hirsuta HOM05D006048 ORTHO05D007642 2.9e-53 214.5 941 26.8
Lsat_1_v5_gn_2_64861 Lactuca sativa HOM05D006048 ORTHO05D007642 2.3e-50 204.9 476 29.6
Atru.chr2.428 Acer truncatum HOM05D006048 ORTHO05D007642 5.4e-44 183.7 180 45.6
CDE05G2441 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 1.3e-42 179.1 364 31.0
Os11g0148400 Oryza sativa ssp. japonica HOM05D006048 ORTHO05D007642 8.6e-42 176.4 326 31.9
SEGI_14627 Sequoiadendron giganteum HOM05D006048 ORTHO05D007642 2.3e-39 168.3 458 28.6
HPP92_011281 Vanilla planifolia HOM05D006048 ORTHO05D007642 1.1e-36 159.5 379 28.8
HPP92_011303 Vanilla planifolia HOM05D006048 ORTHO05D007642 4.1e-36 157.5 380 29.2
Psat7g077840 Pisum sativum HOM05D006048 ORTHO05D007642 6.0e-35 153.7 171 43.3
Mapoly0011s0030 Marchantia polymorpha HOM05D006048 ORTHO05D007642 4.0e-31 141.0 244 32.0
AagrBONN_evm.TU.Sc2ySwM_344.3982 Anthoceros agrestis HOM05D006048 ORTHO05D007642 9.6e-25 119.8 292 27.1
CDE05G0200 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 2.1e-24 118.6 311 29.3
CiPaw.07G016800 Carya illinoinensis HOM05D006048 ORTHO05D007642 9.9e-22 109.8 453 28.3
Atru.chr2.429 Acer truncatum HOM05D006048 ORTHO05D007642 2.1e-19 102.1 231 34.2
MBI19_g40207_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 6.6e-18 97.1 261 30.7
SMO203G0156 Selaginella moellendorffii HOM05D006048 ORTHO05D007642 1.8e-15 89.0 187 28.9
CiPaw.08G165500 Carya illinoinensis HOM05D006048 ORTHO05D007642 2.0e-14 85.5 92 46.7
Manes.08G121600 Manihot esculenta HOM05D006048 ORTHO05D007642 4.5e-14 84.3 670 23.7
Lj9A29T9 Lonicera japonica HOM05D006048 ORTHO05D007642 1.2e-11 76.3 242 33.9
Lj9A18T10 Lonicera japonica HOM05D006048 ORTHO05D007642 2.1e-11 75.5 240 33.3
Actinidia01443 Actinidia chinensis HOM05D006048 ORTHO05D007642 8.1e-08 63.5 101 37.6


User provided reference genes

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