Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g188560 Amaranthus hybridus HOM05D004795 ORTHO05D005518 7.1e-84 313.9 162 100.0
Ah.16g101690 Amaranthus hybridus HOM05D004795 ORTHO05D005518 1.8e-79 299.3 160 96.9
AUR62043981 Chenopodium quinoa HOM05D004795 ORTHO05D005518 3.7e-32 142.1 216 43.5
AUR62009011 Chenopodium quinoa HOM05D004795 ORTHO05D005518 1.0e-29 134.0 254 38.2
AUR62023290 Chenopodium quinoa HOM05D004795 ORTHO05D005518 2.5e-28 129.4 254 37.4
Sc11g0008370 Simmondsia chinensis HOM05D004795 ORTHO05D005518 1.4e-23 113.6 154 51.9
Nitab4.5_0000912g0060 Nicotiana tabacum HOM05D004795 ORTHO05D005518 5.3e-23 111.7 164 43.9
Sopen02g030830 Solanum pennellii HOM05D004795 ORTHO05D005518 1.2e-22 110.5 163 46.6
PGSC0003DMG402026390 Solanum tuberosum HOM05D004795 ORTHO05D005518 2.0e-22 109.8 163 44.2
CAN.G625.30 Capsicum annuum HOM05D004795 ORTHO05D005518 2.7e-22 109.4 164 45.7
Dinv33956 Davidia involucrata HOM05D001490 ORTHO05D001450 6.5e-21 104.8 127 52.0
Nitab4.5_0004416g0090 Nicotiana tabacum HOM05D004795 ORTHO05D005518 1.5e-20 103.6 163 42.9
Oeu016627.1 Olea europaea HOM05D004795 ORTHO05D005518 2.6e-17 92.8 157 41.4
Cc07_g08730 Coffea canephora HOM05D004795 ORTHO05D005518 4.4e-17 92.0 167 41.3
MSTRG.3555 Avicennia marina HOM05D004795 ORTHO05D005518 7.5e-17 91.3 159 40.3
DCAR_025909 Daucus carota HOM05D004795 ORTHO05D005518 2.2e-16 89.7 161 44.1
Peaxi162Scf00394g00712 Petunia axillaris HOM05D004795 ORTHO05D005518 2.8e-16 89.4 117 49.6
Hma1.2p1_1109F.1_g258120 Hydrangea macrophylla HOM05D004795 ORTHO05D005518 4.8e-16 88.6 123 45.5
Rhsim10G0068600 Rhododendron simsii HOM05D004795 ORTHO05D005518 6.3e-16 88.2 153 39.2
PGR042G3836 Punica granatum HOM05D004795 ORTHO05D005518 1.1e-15 87.4 146 42.5
Lsat_1_v5_gn_4_154580 Lactuca sativa HOM05D004795 ORTHO05D005518 1.8e-15 86.7 153 41.8
Thecc.04G132300 Theobroma cacao HOM05D004795 ORTHO05D005518 1.8e-15 86.7 176 38.1
MD17G1245500 Malus domestica HOM05D004795 ORTHO05D005518 2.4e-15 86.3 142 44.4
Cfa007915 Carpinus fangiana HOM05D004795 ORTHO05D005518 7.0e-15 84.7 136 44.9
Ciclev10012794m.g Citrus clementina HOM05D004795 ORTHO05D005518 9.1e-15 84.3 131 44.3
QL02p051034 Quercus lobata HOM05D004795 ORTHO05D005518 9.1e-15 84.3 142 43.0
QL12p016552 Quercus lobata HOM05D004795 ORTHO05D005518 9.1e-15 84.3 142 43.0
ClCG05G012330 Citrullus lanatus HOM05D004795 ORTHO05D005518 2.7e-14 82.8 131 45.0
PGR004G2449 Punica granatum HOM05D004795 ORTHO05D005518 2.7e-14 82.8 144 41.7
CANSAT78G0274 Cannabis sativa HOM05D004795 ORTHO05D005518 3.5e-14 82.4 138 42.0
MD09G1253700 Malus domestica HOM05D004795 ORTHO05D005518 4.5e-14 82.0 142 40.8
Oeu050378.1 Olea europaea HOM05D004795 ORTHO05D005518 4.5e-14 82.0 157 39.5
Duzib138G0938 Durio zibethinus HOM05D004795 ORTHO05D005518 5.9e-14 81.6 162 38.9
Gohir.D11G325700 Gossypium hirsutum HOM05D004795 ORTHO05D005518 5.9e-14 81.6 147 40.1
Gohir.D11G325800 Gossypium hirsutum HOM05D004795 ORTHO05D005518 5.9e-14 81.6 147 39.5
Manes.01G111300 Manihot esculenta HOM05D004795 ORTHO05D005518 5.9e-14 81.6 135 45.2
COL.COLO4_09348 Corchorus olitorius HOM05D004795 ORTHO05D005518 7.7e-14 81.3 138 42.0
TWI77G0518 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 1.0e-13 80.9 141 40.4
Duzib211G0180 Durio zibethinus HOM05D004795 ORTHO05D005518 1.3e-13 80.5 122 46.7
Manes.02G069600 Manihot esculenta HOM05D004795 ORTHO05D005518 1.3e-13 80.5 136 42.6
Eucgr.J01506 Eucalyptus grandis HOM05D004795 ORTHO05D005518 1.7e-13 80.1 164 40.9
TWI53G1522 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 2.2e-13 79.7 121 44.6
Lj2g0010000 Lotus japonicus HOM05D004795 ORTHO05D005518 2.9e-13 79.3 135 40.0
Atru.chr1.1662 Acer truncatum HOM05D004795 ORTHO05D005518 3.8e-13 79.0 138 44.2
FvH4_6g36230 Fragaria vesca HOM05D004795 ORTHO05D005518 5.0e-13 78.6 145 42.8
FAN14G2363 Fragaria x ananassa HOM05D004795 ORTHO05D005518 5.0e-13 78.6 145 42.8
FAN14G5069 Fragaria x ananassa HOM05D004795 ORTHO05D005518 5.0e-13 78.6 145 42.8
SGA_v2.0_scaffold115G32104 Striga asiatica HOM05D004795 ORTHO05D005518 5.0e-13 78.6 123 39.8
TPR.G31528 Trifolium pratense HOM05D004795 ORTHO05D005518 5.0e-13 78.6 116 43.1
FAN09G4185 Fragaria x ananassa HOM05D004795 ORTHO05D005518 6.5e-13 78.2 145 42.8
Glyma.08G366700 Glycine max HOM05D004795 ORTHO05D005518 8.5e-13 77.8 104 51.9
FAN02G3195 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.1e-12 77.4 145 42.1
FAN05G2248 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.1e-12 77.4 145 42.1
Sed0015257 Sechium edule HOM05D004795 ORTHO05D005518 1.1e-12 77.4 131 41.2
CiPaw.03G062800 Carya illinoinensis HOM05D004795 ORTHO05D005518 1.5e-12 77.0 136 41.9
Oeu039734.1 Olea europaea HOM05D004795 ORTHO05D005518 1.5e-12 77.0 142 40.1
Prupe.3G143600 Prunus persica HOM05D004795 ORTHO05D005518 1.5e-12 77.0 140 40.7
Sabra04G0081300 Salix brachista HOM05D004795 ORTHO05D005518 1.9e-12 76.6 134 39.6
CsaV3_3G020240 Cucumis sativus L. HOM05D004795 ORTHO05D005518 3.2e-12 75.9 127 40.9
RcHm_v2.0_Chr2g0148201 Rosa chinensis HOM05D004795 ORTHO05D005518 3.2e-12 75.9 147 38.1
Aa31LG9G17140 Aethionema arabicum HOM05D004795 ORTHO05D005518 4.2e-12 75.5 169 37.9
Carub.0002s1332 Capsella rubella HOM05D004795 ORTHO05D005518 4.2e-12 75.5 131 44.3
MELO3C023735.2 Cucumis melo HOM05D004795 ORTHO05D005518 4.2e-12 75.5 127 40.2
TAR371G0696 Trochodendron aralioides HOM05D004795 ORTHO05D005518 5.5e-12 75.1 157 40.1
Cpa.g.sc170.57 Carica papaya HOM05D004795 ORTHO05D005518 1.2e-11 73.9 143 44.1
Duzib133G0847 Durio zibethinus HOM05D004795 ORTHO05D005518 1.2e-11 73.9 124 42.7
HanXRQChr11g0330661 Helianthus annuus HOM05D004795 ORTHO05D005518 1.2e-11 73.9 115 47.0
Gohir.D11G326300 Gossypium hirsutum HOM05D004795 ORTHO05D005518 2.7e-11 72.8 154 38.3
Gorai.007G182000 Gossypium raimondii HOM05D004795 ORTHO05D005518 2.7e-11 72.8 109 49.5
Nn3g17899 Nelumbo nucifera HOM05D004795 ORTHO05D005518 2.7e-11 72.8 144 39.6
AL2G25370 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 3.6e-11 72.4 149 38.9
TAR629G1480 Trochodendron aralioides HOM05D004795 ORTHO05D005518 3.6e-11 72.4 140 39.3
Phvul.008G007200 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 4.7e-11 72.0 103 47.6
VMungo0464G1679 Vigna mungo HOM05D004795 ORTHO05D005518 6.1e-11 71.6 126 43.7
AT1G67035 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 8.0e-11 71.2 137 40.1
Haze_14167 Corylus avellana HOM05D004795 ORTHO05D005518 8.0e-11 71.2 136 43.4
Gohir.A11G163900 Gossypium hirsutum HOM05D004795 ORTHO05D005518 8.0e-11 71.2 98 51.0
Gohir.D11G170200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 8.0e-11 71.2 98 51.0
Medtr7g082230 Medicago truncatula HOM05D004795 ORTHO05D005518 8.0e-11 71.2 103 45.6
VMungo1383G1737 Vigna mungo HOM05D004795 ORTHO05D005518 8.0e-11 71.2 101 46.5
Sp7g03720 Schrenkiella parvula HOM05D004795 ORTHO05D005518 1.0e-10 70.9 147 40.1
Glyma.13G045200 Glycine max HOM05D004795 ORTHO05D005518 1.4e-10 70.5 134 43.3
CiPaw.04G043000 Carya illinoinensis HOM05D004795 ORTHO05D005518 1.8e-10 70.1 156 36.5
Gorai.008G056400 Gossypium raimondii HOM05D004795 ORTHO05D005518 2.3e-10 69.7 136 38.2
Lj1g0003158 Lotus japonicus HOM05D004795 ORTHO05D005518 2.3e-10 69.7 103 46.6
Phvul.004G066100 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 2.3e-10 69.7 143 43.4
Migut.L00330 Erythranthe guttata HOM05D004795 ORTHO05D005518 4.0e-10 68.9 165 37.0
TAR622G0902 Trochodendron aralioides HOM05D004795 ORTHO05D005518 5.2e-10 68.6 155 38.7
Glyma.19G049900 Glycine max HOM05D004795 ORTHO05D005518 6.8e-10 68.2 108 43.5
THA.LOC104822635 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 8.8e-10 67.8 165 38.2
Gohir.D12G053200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.2e-09 67.4 121 39.7
BcaB06g27183 Brassica carinata HOM05D004795 ORTHO05D005518 1.5e-09 67.0 147 38.1
A04p11270 Brassica napus HOM05D004795 ORTHO05D005518 1.5e-09 67.0 143 39.2
C02p22330 Brassica napus HOM05D004795 ORTHO05D005518 1.5e-09 67.0 126 38.9
BraA04t16787Z Brassica rapa HOM05D004795 ORTHO05D005518 1.5e-09 67.0 143 39.2
Potri.017G116100 Populus trichocarpa HOM05D004795 ORTHO05D005518 1.5e-09 67.0 151 37.1
BcaC02g09641 Brassica carinata HOM05D004795 ORTHO05D005518 2.0e-09 66.6 143 39.2
BolC4t26077H Brassica oleracea HOM05D004795 ORTHO05D005518 2.0e-09 66.6 143 39.2
BraA02t06447Z Brassica rapa HOM05D004795 ORTHO05D005518 2.0e-09 66.6 120 41.7
Ca_08078_v3 Cicer arietinum L. HOM05D004795 ORTHO05D005518 2.0e-09 66.6 103 45.6
A07p33770 Brassica napus HOM05D004795 ORTHO05D005518 2.6e-09 66.2 136 39.7
Potri.004G098200 Populus trichocarpa HOM05D004795 ORTHO05D005518 2.6e-09 66.2 121 38.8
Sabra17G0096100 Salix brachista HOM05D004795 ORTHO05D005518 3.4e-09 65.9 151 36.4
THA.LOC104805574 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 3.4e-09 65.9 165 37.0
BcaC03g14785 Brassica carinata HOM05D004795 ORTHO05D005518 4.4e-09 65.5 129 38.0
Psat3g098240 Pisum sativum HOM05D004795 ORTHO05D005518 4.4e-09 65.5 107 44.9
Gorai.007G356700 Gossypium raimondii HOM05D004795 ORTHO05D005518 5.7e-09 65.1 147 34.7
BolC2t08386H Brassica oleracea HOM05D004795 ORTHO05D005518 7.5e-09 64.7 126 38.9
AT5G38300 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 9.8e-09 64.3 186 34.9
Sp5g21970 Schrenkiella parvula HOM05D004795 ORTHO05D005518 9.8e-09 64.3 136 34.6
CARHR214290 Cardamine hirsuta HOM05D004795 ORTHO05D005518 1.3e-08 63.9 162 36.4
Lalb_Chr10g0091311 Lupinus albus HOM05D004795 ORTHO05D005518 1.3e-08 63.9 108 45.4
BraA07t31003Z Brassica rapa HOM05D004795 ORTHO05D005518 1.7e-08 63.5 123 42.3
HanXRQChr11g0325401 Helianthus annuus HOM05D004795 ORTHO05D005518 1.7e-08 63.5 121 39.7
Carub.0005s1274 Capsella rubella HOM05D004795 ORTHO05D005518 2.2e-08 63.2 156 35.3
C04p44990 Brassica napus HOM05D004795 ORTHO05D005518 2.8e-08 62.8 144 38.2
CARHR059450 Cardamine hirsuta HOM05D004795 ORTHO05D005518 2.8e-08 62.8 151 33.1
Thhalv10027906m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 2.8e-08 62.8 161 37.9
Glyma.18G295700 Glycine max HOM05D004795 ORTHO05D005518 2.8e-08 62.8 157 35.0
BolC6t39123H Brassica oleracea HOM05D004795 ORTHO05D005518 3.7e-08 62.4 176 31.8
Thhalv10019032m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 3.7e-08 62.4 146 33.6
arahy.Tifrunner.gnm1.ann1.HZ9SBP Arachis hypogaea HOM05D001490 ORTHO05D005518 1.1e-07 60.8 150 36.7
Gohir.A12G054400 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.1e-07 60.8 121 38.0
Aa31LG2G3430 Aethionema arabicum HOM05D004795 ORTHO05D005518 1.4e-07 60.5 148 37.2
BcaNung06250 Brassica carinata HOM05D004795 ORTHO05D005518 1.4e-07 60.5 172 36.0
Gorai.001G202200 Gossypium raimondii HOM05D004795 ORTHO05D005518 1.4e-07 60.5 124 33.1
Lalb_Chr02g0158191 Lupinus albus HOM05D004795 ORTHO05D005518 1.4e-07 60.5 89 40.4
AL7G52500 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 7.0e-07 58.2 164 36.0
C06p43160 Brassica napus HOM05D004795 ORTHO05D005518 7.0e-07 58.2 177 31.1
BcaB05g24226 Brassica carinata HOM05D004795 ORTHO05D005518 9.2e-07 57.8 121 34.7
Solyc02g086140.2 Solanum lycopersicum HOM05D004795 ORTHO05D005518 1.2e-06 57.4 64 56.2
Actinidia15890 Actinidia chinensis HOM05D004795 ORTHO05D005518 1.6e-06 57.0 150 32.7
unitig_32.g11886 Utricularia gibba HOM05D004795 ORTHO05D005518 4.5e-06 55.5 121 37.2
Thecc.07G096700 Theobroma cacao HOM05D004795 ORTHO05D002259 5.9e-06 55.1 99 40.4


User provided reference genes

Program Settings