Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g188420 Amaranthus hybridus HOM05D012836 ORTHO05D015817 4.0e-50 201.1 97 100.0
Ah.05g178360 Amaranthus hybridus HOM05D012836 ORTHO05D015817 4.9e-24 114.4 57 91.2
Ah.08g216780 Amaranthus hybridus HOM05D006077 ORTHO05D007499 4.9e-24 114.4 57 91.2
Ah.06g186580 Amaranthus hybridus HOM05D012836 ORTHO05D015817 2.4e-23 112.1 54 90.7
Ah.11g040230 Amaranthus hybridus HOM05D012836 ORTHO05D015817 7.1e-23 110.5 53 92.5
Ah.00g000960 Amaranthus hybridus HOM05D006926 ORTHO05D008863 1.2e-22 109.8 56 85.7
Ah.02g111940 Amaranthus hybridus HOM05D012836 ORTHO05D015817 1.0e-21 106.7 53 90.6
Ah.01g002020 Amaranthus hybridus HOM05D004274 ORTHO05D004980 1.8e-21 105.9 55 85.5
Ah.10g030750 Amaranthus hybridus HOM05D004804 ORTHO05D005882 5.1e-21 104.4 53 88.7
Ah.12g059420 Amaranthus hybridus HOM05D001153 ORTHO05D000949 4.5e-17 91.3 64 68.8
Ah.13g077250 Amaranthus hybridus HOM05D012836 ORTHO05D015817 9.3e-15 83.6 48 72.9
Ah.13g066200 Amaranthus hybridus HOM05D012836 ORTHO05D006332 5.1e-13 77.8 73 54.8
Ah.06g188430 Amaranthus hybridus HOM05D000919 ORTHO05D001187 2.5e-12 75.5 40 97.5
AUR62000569 Chenopodium quinoa HOM05D000919 ORTHO05D001187 6.9e-10 67.4 40 90.0
AUR62006922 Chenopodium quinoa HOM05D000919 ORTHO05D001187 6.9e-10 67.4 40 90.0
EL10Ac4g09692 Beta vulgaris HOM05D000919 ORTHO05D001187 7.6e-09 63.9 40 80.0
Sc25g0004510 Simmondsia chinensis HOM05D000919 ORTHO05D001187 1.0e-08 63.5 40 77.5
Manes.03G187400 Manihot esculenta HOM05D000919 ORTHO05D001187 3.8e-08 61.6 41 80.5
Sp6g25450 Schrenkiella parvula HOM05D000919 ORTHO05D001187 3.8e-08 61.6 41 78.0
Hund21777 Selenicereus undatus HOM05D000919 ORTHO05D001187 6.5e-08 60.8 40 75.0
AL6G30290 Arabidopsis lyrata HOM05D000919 ORTHO05D001187 8.5e-08 60.5 41 78.0
Atru.chr4.2692 Acer truncatum HOM05D000919 ORTHO05D001187 1.1e-07 60.1 41 78.0
Ah.14g081000 Amaranthus hybridus HOM05D005531 ORTHO05D006332 1.1e-07 60.1 27 88.9
BcaB08g36634 Brassica carinata HOM05D000919 ORTHO05D001187 1.1e-07 60.1 41 78.0
BcaC04g18637 Brassica carinata HOM05D000919 ORTHO05D001187 1.1e-07 60.1 41 78.0
A10p20730 Brassica napus HOM05D000919 ORTHO05D001187 1.1e-07 60.1 41 78.0
C09p57590 Brassica napus HOM05D000919 ORTHO05D001187 1.1e-07 60.1 41 78.0
BolC9t58628H Brassica oleracea HOM05D000919 ORTHO05D001187 1.1e-07 60.1 41 78.0
BraA10t44136Z Brassica rapa HOM05D000919 ORTHO05D001187 1.1e-07 60.1 41 78.0
Ah.07g197290 Amaranthus hybridus HOM05D012836 ORTHO05D015817 1.4e-07 59.7 26 92.3
COL.COLO4_13979 Corchorus olitorius HOM05D000919 ORTHO05D015817 1.4e-07 59.7 42 73.8
Ah.15g099580 Amaranthus hybridus HOM05D012836 ORTHO05D015817 1.9e-07 59.3 38 68.4
AT5G18940 Arabidopsis thaliana HOM05D000919 ORTHO05D001187 1.9e-07 59.3 41 75.6
Carub.0006s1724 Capsella rubella HOM05D000919 ORTHO05D001187 1.9e-07 59.3 41 75.6
CARHR194050 Cardamine hirsuta HOM05D000919 ORTHO05D001187 1.9e-07 59.3 41 75.6
Cpa.g.sc16.60 Carica papaya HOM05D000919 ORTHO05D001187 1.9e-07 59.3 41 78.0
PGR031G1890 Punica granatum HOM05D000919 ORTHO05D001187 1.9e-07 59.3 41 75.6
Thecc.04G271200 Theobroma cacao HOM05D000919 ORTHO05D001187 2.5e-07 58.9 41 75.6
Cfa015546 Carpinus fangiana HOM05D000919 ORTHO05D001187 3.2e-07 58.5 41 75.6
Hma1.2p1_0511F.1_g169200 Hydrangea macrophylla HOM05D000919 ORTHO05D001187 3.2e-07 58.5 41 75.6
Hma1.2p1_2025F.1_g311490 Hydrangea macrophylla HOM05D000919 ORTHO05D001187 3.2e-07 58.5 41 75.6
TWI53G1620 Tripterygium wilfordii HOM05D000919 ORTHO05D001187 3.2e-07 58.5 41 75.6
TWI73G0028 Tripterygium wilfordii HOM05D000919 ORTHO05D001187 3.2e-07 58.5 41 75.6
Ah.02g127550 Amaranthus hybridus HOM05D012836 ORTHO05D015817 4.2e-07 58.2 26 88.5
Thhalv10014002m.g Eutrema salsugineum HOM05D000919 ORTHO05D001187 4.2e-07 58.2 41 75.6
Aa31LG11G10780 Aethionema arabicum HOM05D000919 ORTHO05D001187 5.5e-07 57.8 41 73.2
Ah.07g205670 Amaranthus hybridus HOM05D000036 ORTHO05D000095 7.2e-07 57.4 26 88.5
Ah.11g039390 Amaranthus hybridus HOM05D000129 ORTHO05D000997 7.2e-07 57.4 30 90.0
Lalb_Chr20g0118291 Lupinus albus HOM05D000919 ORTHO05D001187 7.2e-07 57.4 41 78.0
Potri.008G198900 Populus trichocarpa HOM05D000919 ORTHO05D001187 7.2e-07 57.4 41 75.6
Ca_00595_v3 Cicer arietinum L. HOM05D000919 ORTHO05D001187 9.3e-07 57.0 41 75.6
Medtr2g021040 Medicago truncatula HOM05D000919 ORTHO05D001187 9.3e-07 57.0 41 75.6
Psat1g185280 Pisum sativum HOM05D000919 ORTHO05D001187 9.3e-07 57.0 41 75.6
Potri.010G028700 Populus trichocarpa HOM05D000919 ORTHO05D001187 9.3e-07 57.0 41 75.6
Rhsim02G0017000 Rhododendron simsii HOM05D000919 ORTHO05D001187 9.3e-07 57.0 41 73.2
Sabra10G0012200 Salix brachista HOM05D000919 ORTHO05D001187 9.3e-07 57.0 41 75.6
TPR.G18043 Trifolium pratense HOM05D000919 ORTHO05D001187 9.3e-07 57.0 41 75.6
MELO3C021389.2 Cucumis melo HOM05D000919 ORTHO05D001187 1.2e-06 56.6 41 73.2
CsaV3_6G005480 Cucumis sativus L. HOM05D000919 ORTHO05D001187 1.2e-06 56.6 41 73.2
Duzib266G0002 Durio zibethinus HOM05D000919 ORTHO05D001187 1.2e-06 56.6 41 73.2
Lj3A805G60 Lonicera japonica HOM05D000919 ORTHO05D001187 1.2e-06 56.6 41 73.2
TAR362G0808 Trochodendron aralioides HOM05D000919 ORTHO05D001187 1.2e-06 56.6 41 73.2
vmacro15290 Vaccinium macrocarpon HOM05D000919 ORTHO05D001187 1.2e-06 56.6 68 48.5
Haze_01002 Corylus avellana HOM05D000919 ORTHO05D001187 1.6e-06 56.2 41 73.2
Dinv44462 Davidia involucrata HOM05D000919 ORTHO05D001187 1.6e-06 56.2 41 70.7
Duzib151G1157 Durio zibethinus HOM05D000919 ORTHO05D001187 1.6e-06 56.2 41 70.7
Duzib212G0022 Durio zibethinus HOM05D000919 ORTHO05D001187 1.6e-06 56.2 41 70.7
Oeu023649.1 Olea europaea HOM05D000919 ORTHO05D001187 1.6e-06 56.2 41 70.7
Prupe.1G148000 Prunus persica HOM05D000919 ORTHO05D001187 2.1e-06 55.8 41 70.7
THA.LOC104818826 Tarenaya hassleriana HOM05D000919 ORTHO05D001187 2.1e-06 55.8 40 70.0
Aqoxy5G00556 Aquilegia oxysepala HOM05D000919 ORTHO05D001187 2.7e-06 55.5 41 70.7
ClCG06G005670 Citrullus lanatus HOM05D000919 ORTHO05D001187 2.7e-06 55.5 41 70.7
Glyma.13G211500 Glycine max HOM05D000919 ORTHO05D001187 2.7e-06 55.5 41 73.2
MD13G1179400 Malus domestica HOM05D000919 ORTHO05D001187 2.7e-06 55.5 41 73.2
Phvul.006G157600 Phaseolus vulgaris HOM05D000919 ORTHO05D001187 2.7e-06 55.5 41 73.2
Sed0012382 Sechium edule HOM05D000919 ORTHO05D001187 2.7e-06 55.5 41 70.7
CiPaw.01G157400 Carya illinoinensis HOM05D000919 ORTHO05D001187 3.6e-06 55.1 41 70.7
Cc11_g04250 Coffea canephora HOM05D000919 ORTHO05D001187 3.6e-06 55.1 41 68.3
QL06p006047 Quercus lobata HOM05D000919 ORTHO05D001187 3.6e-06 55.1 41 73.2
Lsat_1_v5_gn_6_14801 Lactuca sativa HOM05D000919 ORTHO05D001187 4.6e-06 54.7 41 70.7
Ah.10g032970 Amaranthus hybridus HOM05D012836 ORTHO05D006332 6.1e-06 54.3 24 87.5
Ah.15g092900 Amaranthus hybridus HOM05D012836 ORTHO05D015817 6.1e-06 54.3 26 84.6
Ciclev10005330m.g Citrus clementina HOM05D000919 ORTHO05D001187 6.1e-06 54.3 41 73.2
Eucgr.D00263 Eucalyptus grandis HOM05D000919 ORTHO05D001187 6.1e-06 54.3 41 70.7
CANSAT78G2256 Cannabis sativa HOM05D000919 ORTHO05D001187 7.9e-06 53.9 40 67.5
Lalb_Chr18g0055951 Lupinus albus HOM05D000919 ORTHO05D001187 7.9e-06 53.9 41 70.7


User provided reference genes

Program Settings