Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g188340 Amaranthus hybridus HOM05D005905 ORTHO05D005996 1.6e-89 332.8 171 100.0
Ah.06g188350 Amaranthus hybridus HOM05D005905 ORTHO05D005996 2.3e-48 196.1 159 64.8
Hund21772 Selenicereus undatus HOM05D005905 ORTHO05D005996 8.1e-22 107.8 169 40.2
Sc09g0001990 Simmondsia chinensis HOM05D005905 ORTHO05D005996 1.0e-19 100.9 167 40.1
EL10Ac4g09704 Beta vulgaris HOM05D005905 ORTHO05D005996 2.9e-19 99.4 174 37.4
RcHm_v2.0_Chr2g0116171 Rosa chinensis HOM05D005905 ORTHO05D005996 4.9e-19 98.6 172 37.2
EL10Ac8g19310 Beta vulgaris HOM05D005905 ORTHO05D005996 6.5e-19 98.2 174 37.4
CsaV3_7G027220 Cucumis sativus L. HOM05D005905 ORTHO05D005996 8.4e-19 97.8 171 37.4
Ah.14g088890 Amaranthus hybridus HOM05D005905 ORTHO05D005996 1.1e-18 97.4 137 44.5
MELO3C015720.2 Cucumis melo HOM05D005905 ORTHO05D005996 1.1e-18 97.4 171 37.4
ClCG09G007860 Citrullus lanatus HOM05D005905 ORTHO05D005996 1.4e-18 97.1 177 36.7
FvH4_1g22090 Fragaria vesca HOM05D005905 ORTHO05D005996 2.5e-18 96.3 171 36.8
MD15G1334300 Malus domestica HOM05D005905 ORTHO05D005996 2.5e-18 96.3 173 35.8
Sed0023505 Sechium edule HOM05D005905 ORTHO05D005996 2.5e-18 96.3 173 37.6
AUR62006929 Chenopodium quinoa HOM05D005905 ORTHO05D005996 5.5e-18 95.1 170 36.5
AT5G23520 Arabidopsis thaliana HOM05D005905 ORTHO05D005996 9.3e-18 94.4 170 37.1
Prupe.6G175200 Prunus persica HOM05D005905 ORTHO05D005996 9.3e-18 94.4 173 36.4
QL10p035062 Quercus lobata HOM05D005905 ORTHO05D005996 9.3e-18 94.4 173 35.8
CiPaw.15G186200 Carya illinoinensis HOM05D005905 ORTHO05D005996 1.2e-17 94.0 173 37.0
Lsat_1_v5_gn_2_40320 Lactuca sativa HOM05D005905 ORTHO05D005996 1.2e-17 94.0 140 41.4
Carub.0006s2129 Capsella rubella HOM05D005905 ORTHO05D005996 1.6e-17 93.6 170 37.1
AL6G34790 Arabidopsis lyrata HOM05D005905 ORTHO05D005996 2.1e-17 93.2 170 35.9
PSO170G3497 Papaver somniferum HOM05D005905 ORTHO05D005996 2.1e-17 93.2 153 39.2
CARHR190020 Cardamine hirsuta HOM05D005905 ORTHO05D005996 2.7e-17 92.8 170 36.5
PSO017G4395 Papaver somniferum HOM05D005905 ORTHO05D005996 2.7e-17 92.8 153 37.9
Lj4A826T50 Lonicera japonica HOM05D005905 ORTHO05D005996 6.0e-17 91.7 168 38.7
Gohir.A05G372800 Gossypium hirsutum HOM05D005905 ORTHO05D005996 7.9e-17 91.3 168 36.3
Gohir.D04G042700 Gossypium hirsutum HOM05D005905 ORTHO05D005996 7.9e-17 91.3 168 36.3
SGA_v2.0_scaffold12G06257 Striga asiatica HOM05D005905 ORTHO05D005996 7.9e-17 91.3 170 36.5
TWI75G0068 Tripterygium wilfordii HOM05D005905 ORTHO05D005996 7.9e-17 91.3 170 36.5
HPP92_011435 Vanilla planifolia HOM05D005905 ORTHO05D005996 7.9e-17 91.3 156 37.2
Gorai.012G048200 Gossypium raimondii HOM05D005905 ORTHO05D005996 1.0e-16 90.9 168 36.3
HanXRQChr04g0110551 Helianthus annuus HOM05D005905 ORTHO05D005996 1.3e-16 90.5 157 37.6
Thecc.01G145000 Theobroma cacao HOM05D005905 ORTHO05D005996 1.8e-16 90.1 171 35.1
Haze_19376 Corylus avellana HOM05D005905 ORTHO05D005996 2.3e-16 89.7 161 37.3
Migut.H02558 Erythranthe guttata HOM05D005905 ORTHO05D005996 2.3e-16 89.7 185 34.6
Thhalv10004341m.g Eutrema salsugineum HOM05D005905 ORTHO05D005996 2.3e-16 89.7 170 35.3
Os04g0442100 Oryza sativa ssp. japonica HOM05D005905 ORTHO05D005996 2.3e-16 89.7 164 35.4
THA.LOC104800580 Tarenaya hassleriana HOM05D005905 ORTHO05D005996 2.3e-16 89.7 170 35.3
Aa31LG11G2910 Aethionema arabicum HOM05D005905 ORTHO05D005996 3.0e-16 89.4 170 36.5
MBI03_g20878_MAGBIO Magnolia biondii HOM05D005905 ORTHO05D005996 3.0e-16 89.4 174 34.5
QL09p047332 Quercus lobata HOM05D005905 ORTHO05D005996 3.0e-16 89.4 140 40.0
BcaNung03737 Brassica carinata HOM05D005905 ORTHO05D005996 5.1e-16 88.6 170 35.3
BolC7t44931H Brassica oleracea HOM05D005905 ORTHO05D005996 5.1e-16 88.6 170 35.3
Lalb_Chr19g0126361 Lupinus albus HOM05D005905 ORTHO05D005996 5.1e-16 88.6 168 33.9
QL05p019434 Quercus lobata HOM05D005905 ORTHO05D005996 5.1e-16 88.6 140 40.0
Sp2g23680 Schrenkiella parvula HOM05D005905 ORTHO05D005996 5.1e-16 88.6 169 35.5
Atru.chr3.1412 Acer truncatum HOM05D005905 ORTHO05D005996 6.7e-16 88.2 173 35.8
BcaNung03738 Brassica carinata HOM05D005905 ORTHO05D005996 6.7e-16 88.2 170 35.3
BcaNung03739 Brassica carinata HOM05D005905 ORTHO05D005996 6.7e-16 88.2 170 35.3
Nn5g27344 Nelumbo nucifera HOM05D005905 ORTHO05D005996 6.7e-16 88.2 174 32.2
Cfa020942 Carpinus fangiana HOM05D005905 ORTHO05D005996 8.7e-16 87.8 179 35.8
DCAR_019943 Daucus carota HOM05D005905 ORTHO05D005996 8.7e-16 87.8 162 37.7
A06p34480 Brassica napus HOM05D005905 ORTHO05D005996 1.1e-15 87.4 170 34.7
BraA06t26376Z Brassica rapa HOM05D005905 ORTHO05D005996 1.1e-15 87.4 170 34.7
COL.COLO4_12147 Corchorus olitorius HOM05D005905 ORTHO05D005996 1.1e-15 87.4 171 33.9
Cpa.g.sc127.35 Carica papaya HOM05D005905 ORTHO05D005996 1.5e-15 87.0 170 35.3
unitig_899.g14973 Utricularia gibba HOM05D005905 ORTHO05D005996 1.5e-15 87.0 189 33.3
Glyma.09G244700 Glycine max HOM05D005905 ORTHO05D005996 1.9e-15 86.7 165 33.9
C07p44070 Brassica napus HOM05D005905 ORTHO05D005996 3.3e-15 85.9 170 35.3
Manes.17G045200 Manihot esculenta HOM05D005905 ORTHO05D005996 3.3e-15 85.9 164 36.0
Medtr6g034130 Medicago truncatula HOM05D005905 ORTHO05D005996 3.3e-15 85.9 119 42.0
TAR628G0724 Trochodendron aralioides HOM05D005905 ORTHO05D005996 4.3e-15 85.5 172 33.1
CANSAT54G0939 Cannabis sativa HOM05D005905 ORTHO05D005996 5.7e-15 85.1 158 37.3
CDE02G2172 Ceratophyllum demersum HOM05D005905 ORTHO05D005996 7.4e-15 84.7 171 35.1
Duzib187G1788 Durio zibethinus HOM05D005905 ORTHO05D005996 9.6e-15 84.3 167 35.3
Hma1.2p1_0213F.1_g090480 Hydrangea macrophylla HOM05D005905 ORTHO05D005996 9.6e-15 84.3 188 33.5
Manes.13G155500 Manihot esculenta HOM05D005905 ORTHO05D005996 9.6e-15 84.3 173 34.1
MSTRG.23227 Avicennia marina HOM05D005905 ORTHO05D005996 1.3e-14 84.0 169 35.5
arahy.Tifrunner.gnm1.ann1.N289YY Arachis hypogaea HOM05D005905 ORTHO05D005996 1.6e-14 83.6 171 33.3
Sabra19G0011400 Salix brachista HOM05D005905 ORTHO05D005996 1.6e-14 83.6 173 34.7
GSVIVG01000261001 Vitis vinifera HOM05D005905 ORTHO05D005996 1.6e-14 83.6 173 34.7
arahy.Tifrunner.gnm1.ann1.TUTH4E Arachis hypogaea HOM05D005905 ORTHO05D005996 2.1e-14 83.2 172 33.1
Solyc05g056320.3 Solanum lycopersicum HOM05D005905 ORTHO05D005996 2.1e-14 83.2 158 36.1
AUR62000575 Chenopodium quinoa HOM05D005905 ORTHO05D005996 2.8e-14 82.8 190 33.2
Sabra19G0001400 Salix brachista HOM05D005905 ORTHO05D005996 2.8e-14 82.8 173 34.7
VMungo1383G1950 Vigna mungo HOM05D005905 ORTHO05D005996 2.8e-14 82.8 163 31.3
Glyma.18G248600 Glycine max HOM05D005905 ORTHO05D005996 4.8e-14 82.0 170 31.2
Psat3g100200 Pisum sativum HOM05D005905 ORTHO05D005996 4.8e-14 82.0 168 35.1
Sopen05g034710 Solanum pennellii HOM05D005905 ORTHO05D005996 4.8e-14 82.0 158 36.1
PGSC0003DMG400023332 Solanum tuberosum HOM05D005905 ORTHO05D005996 4.8e-14 82.0 167 34.1
Potri.T013000 Populus trichocarpa HOM05D005905 ORTHO05D005996 6.2e-14 81.6 173 34.7
Cc07_g19890 Coffea canephora HOM05D005905 ORTHO05D005996 8.2e-14 81.3 173 33.5
SalBow8G4641 Salvia bowleyana HOM05D005905 ORTHO05D005996 8.2e-14 81.3 169 33.7
Peaxi162Scf00353g00730 Petunia axillaris HOM05D005905 ORTHO05D005996 1.1e-13 80.9 171 33.3
Lalb_Chr20g0117801 Lupinus albus HOM05D005905 ORTHO05D005996 1.8e-13 80.1 142 38.0
Lalb_Chr20g0117861 Lupinus albus HOM05D005905 ORTHO05D005996 1.8e-13 80.1 142 38.0
Medtr7g081260 Medicago truncatula HOM05D005905 ORTHO05D005996 1.8e-13 80.1 170 32.9
SEGI_40650 Sequoiadendron giganteum HOM05D005905 ORTHO05D005996 1.8e-13 80.1 158 35.4
Eucgr.H05059 Eucalyptus grandis HOM05D005905 ORTHO05D005996 2.4e-13 79.7 174 31.0
Nitab4.5_0000496g0260 Nicotiana tabacum HOM05D005905 ORTHO05D005996 2.4e-13 79.7 171 32.2
TPR.G29110 Trifolium pratense HOM05D005905 ORTHO05D005996 2.4e-13 79.7 163 33.1
Aqoxy6G00049 Aquilegia oxysepala HOM05D005905 ORTHO05D005996 4.1e-13 79.0 156 33.3
Nitab4.5_0010070g0020 Nicotiana tabacum HOM05D005905 ORTHO05D005996 5.3e-13 78.6 171 32.2
PGR102G2263 Punica granatum HOM05D005905 ORTHO05D005996 6.9e-13 78.2 176 32.4
TPR.G33754 Trifolium pratense HOM05D005905 ORTHO05D005996 6.9e-13 78.2 121 44.6
Ca_08049_v3 Cicer arietinum L. HOM05D005905 ORTHO05D005996 9.0e-13 77.8 191 31.9
Ca_08055_v3 Cicer arietinum L. HOM05D005905 ORTHO05D005996 9.0e-13 77.8 191 31.9
Rhsim10G0138000 Rhododendron simsii HOM05D006573 ORTHO05D008073 1.5e-12 77.0 170 34.7
Ciclev10025459m.g Citrus clementina HOM05D005905 ORTHO05D005996 2.6e-12 76.3 109 40.4
Ah.06g188380 Amaranthus hybridus HOM05D005905 ORTHO05D005996 4.5e-12 75.5 122 41.8
Lj1g0015901 Lotus japonicus HOM05D005905 ORTHO05D005996 5.8e-12 75.1 166 34.9
CAN.G1921.10 Capsicum annuum HOM05D005905 ORTHO05D005996 7.6e-12 74.7 173 32.4
Phvul.008G048800 Phaseolus vulgaris HOM05D005905 ORTHO05D005996 1.0e-11 74.3 165 32.1
BcaNung03858 Brassica carinata HOM05D005905 ORTHO05D005996 2.9e-11 72.8 155 33.5
FAN19G0082 Fragaria x ananassa HOM05D005905 ORTHO05D005996 2.9e-11 72.8 189 31.2
QL09p028391 Quercus lobata HOM05D005905 ORTHO05D005996 3.8e-11 72.4 140 36.4
Cc07_g19900 Coffea canephora HOM05D005905 ORTHO05D005996 5.0e-11 72.0 239 28.0
Atru.chr3.1426 Acer truncatum HOM05D005905 ORTHO05D005996 6.5e-11 71.6 99 42.4
Mapoly0015s0082 Marchantia polymorpha HOM05D005905 ORTHO05D005996 6.5e-11 71.6 176 33.0
vmacro12853 Vaccinium macrocarpon HOM05D005905 ORTHO05D005996 8.4e-11 71.2 170 32.4
ATR1089G162 Amborella trichopoda HOM05D005905 ORTHO05D005996 1.4e-10 70.5 157 34.4
SMO239G0053 Selaginella moellendorffii HOM05D005905 ORTHO05D005996 1.4e-10 70.5 134 35.8
AagrBONN_evm.TU.Sc2ySwM_368.3232 Anthoceros agrestis HOM05D005905 ORTHO05D005996 3.2e-10 69.3 158 30.4
Lj3g0014044 Lotus japonicus HOM05D005905 ORTHO05D005996 3.2e-10 69.3 121 36.4
Medtr6g034165 Medicago truncatula HOM05D005905 ORTHO05D005996 5.5e-10 68.6 95 37.9
HPP92_011427 Vanilla planifolia HOM05D005905 ORTHO05D005996 7.1e-10 68.2 97 38.1
Pp3c18_21070 Physcomitrium patens HOM05D005905 ORTHO05D005996 1.6e-09 67.0 176 30.7
Dinv17124 Davidia involucrata HOM05D010983 ORTHO05D005996 3.5e-09 65.9 153 31.4
FAN28G0415 Fragaria x ananassa HOM05D000290 ORTHO05D002418 1.8e-08 63.5 153 32.0
Migut.E01787 Erythranthe guttata HOM05D000001 ORTHO05D004044 2.3e-08 63.2 143 30.8
SGA_v2.0_scaffold163G37994 Striga asiatica HOM05D000001 ORTHO05D004044 3.0e-08 62.8 143 31.5
Oeu003966.1 Olea europaea HOM05D000001 ORTHO05D004044 6.7e-08 61.6 143 30.8
SGA_v2.0_scaffold169G38720 Striga asiatica HOM05D000001 ORTHO05D004044 6.7e-08 61.6 143 31.5
MSTRG.25995 Avicennia marina HOM05D000001 ORTHO05D004044 8.7e-08 61.2 143 29.4
Pp3c21_2450 Physcomitrium patens HOM05D005905 ORTHO05D005996 1.1e-07 60.8 177 29.9
FAN26G1302 Fragaria x ananassa HOM05D000290 ORTHO05D002418 1.9e-07 60.1 82 43.9
TPR.G38869 Trifolium pratense HOM05D000001 ORTHO05D004044 2.5e-07 59.7 148 28.4
GSVIVG01035490001 Vitis vinifera HOM05D000001 ORTHO05D004044 2.5e-07 59.7 147 29.9
Lj5g0004443 Lotus japonicus HOM05D000001 ORTHO05D004044 3.3e-07 59.3 141 29.8
unitig_32.g10913 Utricularia gibba HOM05D000001 ORTHO05D004044 3.3e-07 59.3 143 28.7
FAN23G0918 Fragaria x ananassa HOM05D000290 ORTHO05D002418 4.3e-07 58.9 82 42.7
Medtr1g014880 Medicago truncatula HOM05D000001 ORTHO05D004044 4.3e-07 58.9 147 27.9
Rhsim11G0001100 Rhododendron simsii HOM05D000001 ORTHO05D004044 5.7e-07 58.5 151 29.1
CANSAT25G0247 Cannabis sativa HOM05D000001 ORTHO05D004044 7.4e-07 58.2 148 27.7
Atru.chr7.1828 Acer truncatum HOM05D000001 ORTHO05D004044 9.7e-07 57.8 146 29.5
Glyma.17G219600 Glycine max HOM05D000001 ORTHO05D004044 1.3e-06 57.4 145 29.7
arahy.Tifrunner.gnm1.ann1.1E00SW Arachis hypogaea HOM05D000001 ORTHO05D004044 1.6e-06 57.0 134 29.1
CSS0022708 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D004044 1.6e-06 57.0 148 30.4
Hma1.2p1_0664F.1_g198920 Hydrangea macrophylla HOM05D000001 ORTHO05D004044 1.6e-06 57.0 148 30.4
Phvul.001G044600 Phaseolus vulgaris HOM05D000001 ORTHO05D004044 1.6e-06 57.0 148 27.7
Thecc.09G065500 Theobroma cacao HOM05D000001 ORTHO05D004044 1.6e-06 57.0 142 28.9
TWI34G0443 Tripterygium wilfordii HOM05D000001 ORTHO05D004044 1.6e-06 57.0 148 29.7
Aa31LG5G9520 Aethionema arabicum HOM05D000001 ORTHO05D004044 2.2e-06 56.6 145 26.9
Glyma.14G106500 Glycine max HOM05D000001 ORTHO05D004044 2.2e-06 56.6 145 29.7
PSO724G0994 Papaver somniferum HOM05D000001 ORTHO05D004044 2.2e-06 56.6 145 26.9
Potri.018G047700 Populus trichocarpa HOM05D000001 ORTHO05D004044 2.2e-06 56.6 148 28.4
SHI08855 Sapria himalayana HOM05D005905 ORTHO05D005996 2.2e-06 56.6 112 32.1
Zm00001eb411920 Zea mays HOM05D000001 ORTHO05D004044 2.2e-06 56.6 129 29.5
Cpa.g.sc82.5 Carica papaya HOM05D000001 ORTHO05D004044 2.8e-06 56.2 145 29.0
Cc08_g00980 Coffea canephora HOM05D000001 ORTHO05D004044 2.8e-06 56.2 144 28.5
Haze_18323 Corylus avellana HOM05D000001 ORTHO05D004044 2.8e-06 56.2 148 29.1
SalBow4G2835 Salvia bowleyana HOM05D000001 ORTHO05D004044 2.8e-06 56.2 144 28.5
TWI32G1352 Tripterygium wilfordii HOM05D000001 ORTHO05D004044 2.8e-06 56.2 148 29.7
VMungo0647G0604 Vigna mungo HOM05D000001 ORTHO05D004044 2.8e-06 56.2 148 29.1
DCAR_003727 Daucus carota HOM05D000001 ORTHO05D004044 3.7e-06 55.8 148 28.4
Eucgr.C00743 Eucalyptus grandis HOM05D000001 ORTHO05D004044 3.7e-06 55.8 148 27.0
PSO135G0765 Papaver somniferum HOM05D000001 ORTHO05D004044 3.7e-06 55.8 145 26.2
RcHm_v2.0_Chr6g0312051 Rosa chinensis HOM05D000001 ORTHO05D004044 3.7e-06 55.8 144 29.2
DCAR_004372 Daucus carota HOM05D000001 ORTHO05D004044 4.8e-06 55.5 148 26.4
arahy.Tifrunner.gnm1.ann1.8BKD36 Arachis hypogaea HOM05D000001 ORTHO05D004044 6.3e-06 55.1 134 29.1
FAN15G1549 Fragaria x ananassa HOM05D000001 ORTHO05D004044 6.3e-06 55.1 145 29.0
Glyma.04G057200 Glycine max HOM05D000001 ORTHO05D004044 6.3e-06 55.1 134 26.9
Manes.16G087000 Manihot esculenta HOM05D000001 ORTHO05D004044 6.3e-06 55.1 150 27.3
COL.COLO4_21160 Corchorus olitorius HOM05D000001 ORTHO05D004044 8.2e-06 54.7 145 28.3
Duzib187G1939 Durio zibethinus HOM05D000001 ORTHO05D004044 8.2e-06 54.7 145 27.6
FAN20G1082 Fragaria x ananassa HOM05D000001 ORTHO05D004044 8.2e-06 54.7 145 29.0
Lalb_Chr14g0375461 Lupinus albus HOM05D000001 ORTHO05D004044 8.2e-06 54.7 148 26.4
MD15G1047700 Malus domestica HOM05D000001 ORTHO05D004044 8.2e-06 54.7 148 27.0
SMO356G0739 Selaginella moellendorffii HOM05D000001 ORTHO05D004044 8.2e-06 54.7 145 28.3
Solyc08g061320.3 Solanum lycopersicum HOM05D000001 ORTHO05D004044 8.2e-06 54.7 131 28.2
Sopen08g016700 Solanum pennellii HOM05D000001 ORTHO05D004044 8.2e-06 54.7 131 28.2
TWI63G1385 Tripterygium wilfordii HOM05D000001 ORTHO05D000003 8.2e-06 54.7 148 27.7
TAR636G0641 Trochodendron aralioides HOM05D000001 ORTHO05D004044 8.2e-06 54.7 148 27.7


User provided reference genes

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