Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g188320 Amaranthus hybridus HOM05D005905 ORTHO05D005996 6.5e-171 604.0 308 100.0
EL10Ac8g19310 Beta vulgaris HOM05D005905 ORTHO05D005996 4.5e-71 272.3 440 41.8
EL10Ac4g09704 Beta vulgaris HOM05D005905 ORTHO05D005996 1.3e-70 270.8 439 41.2
AUR62000575 Chenopodium quinoa HOM05D005905 ORTHO05D005996 4.5e-63 245.7 464 37.9
AUR62006929 Chenopodium quinoa HOM05D005905 ORTHO05D005996 3.2e-61 239.6 445 38.7
Hund21772 Selenicereus undatus HOM05D005905 ORTHO05D005996 2.6e-55 219.9 440 36.8
Gorai.012G048200 Gossypium raimondii HOM05D005905 ORTHO05D005996 8.6e-38 161.8 432 30.6
RcHm_v2.0_Chr2g0116171 Rosa chinensis HOM05D005905 ORTHO05D005996 1.1e-37 161.4 433 31.9
Gohir.D04G042700 Gossypium hirsutum HOM05D005905 ORTHO05D005996 2.1e-36 157.1 432 30.3
Sc09g0001990 Simmondsia chinensis HOM05D005905 ORTHO05D005996 1.4e-35 154.5 260 42.7
Dinv17121 Davidia involucrata HOM05D005905 ORTHO05D005996 5.2e-35 152.5 253 37.9
Gohir.A05G372800 Gossypium hirsutum HOM05D005905 ORTHO05D005996 1.2e-34 151.4 429 28.9
FAN28G0415 Fragaria x ananassa HOM05D000290 ORTHO05D002418 4.4e-34 149.4 380 34.7
FvH4_1g22090 Fragaria vesca HOM05D005905 ORTHO05D005996 5.7e-34 149.1 424 30.4
vmacro12853 Vaccinium macrocarpon HOM05D005905 ORTHO05D005996 5.7e-34 149.1 436 29.1
COL.COLO4_12147 Corchorus olitorius HOM05D005905 ORTHO05D005996 2.2e-33 147.1 432 30.6
Prupe.6G175200 Prunus persica HOM05D005905 ORTHO05D005996 2.8e-33 146.7 435 30.6
Thecc.01G145000 Theobroma cacao HOM05D005905 ORTHO05D005996 4.9e-33 146.0 433 29.3
Nn5g27344 Nelumbo nucifera HOM05D005905 ORTHO05D005996 1.6e-31 141.0 447 29.8
arahy.Tifrunner.gnm1.ann1.N289YY Arachis hypogaea HOM05D005905 ORTHO05D005996 2.0e-31 140.6 436 29.8
Cpa.g.sc127.35 Carica papaya HOM05D005905 ORTHO05D005996 2.7e-31 140.2 435 28.0
Rhsim10G0138000 Rhododendron simsii HOM05D006573 ORTHO05D008073 3.3e-29 133.3 437 29.7
Sabra19G0011400 Salix brachista HOM05D005905 ORTHO05D005996 3.3e-29 133.3 428 31.1
FAN19G0082 Fragaria x ananassa HOM05D005905 ORTHO05D005996 4.3e-29 132.9 385 32.7
Lj1g0015901 Lotus japonicus HOM05D005905 ORTHO05D005996 5.6e-29 132.5 437 27.0
Sabra19G0001400 Salix brachista HOM05D005905 ORTHO05D005996 5.6e-29 132.5 428 31.1
Potri.T013000 Populus trichocarpa HOM05D005905 ORTHO05D005996 7.3e-29 132.1 439 31.2
AT5G23520 Arabidopsis thaliana HOM05D005905 ORTHO05D005996 1.6e-28 131.0 434 28.3
TAR628G0724 Trochodendron aralioides HOM05D005905 ORTHO05D005996 2.1e-28 130.6 442 26.9
arahy.Tifrunner.gnm1.ann1.TUTH4E Arachis hypogaea HOM05D005905 ORTHO05D005996 2.8e-28 130.2 433 27.9
MD15G1334300 Malus domestica HOM05D005905 ORTHO05D005996 1.0e-27 128.3 429 27.7
Manes.13G155500 Manihot esculenta HOM05D005905 ORTHO05D005996 1.0e-27 128.3 440 28.4
Ciclev10025459m.g Citrus clementina HOM05D005905 ORTHO05D005996 2.3e-27 127.1 263 35.7
THA.LOC104800580 Tarenaya hassleriana HOM05D005905 ORTHO05D005996 2.3e-27 127.1 425 27.5
Sp2g23680 Schrenkiella parvula HOM05D005905 ORTHO05D005996 1.2e-26 124.8 435 28.3
AL6G34790 Arabidopsis lyrata HOM05D005905 ORTHO05D005996 1.5e-26 124.4 434 27.4
C07p44070 Brassica napus HOM05D005905 ORTHO05D005996 1.5e-26 124.4 437 28.8
Duzib187G1788 Durio zibethinus HOM05D005905 ORTHO05D005996 1.5e-26 124.4 255 37.3
QL10p035062 Quercus lobata HOM05D005905 ORTHO05D005996 4.4e-26 122.9 427 27.6
PSO170G3497 Papaver somniferum HOM05D005905 ORTHO05D005996 7.5e-26 122.1 415 27.2
CARHR190020 Cardamine hirsuta HOM05D005905 ORTHO05D005996 1.3e-25 121.3 427 28.1
PSO017G4395 Papaver somniferum HOM05D005905 ORTHO05D005996 1.3e-25 121.3 420 26.7
BcaNung03737 Brassica carinata HOM05D005905 ORTHO05D005996 3.7e-25 119.8 438 28.3
BolC7t44931H Brassica oleracea HOM05D005905 ORTHO05D005996 3.7e-25 119.8 438 28.3
Aqoxy6G00049 Aquilegia oxysepala HOM05D005905 ORTHO05D005996 4.9e-25 119.4 417 26.9
FAN26G1302 Fragaria x ananassa HOM05D000290 ORTHO05D002418 4.9e-25 119.4 365 32.3
Psat3g100200 Pisum sativum HOM05D005905 ORTHO05D005996 6.4e-25 119.0 446 27.1
BraA06t26376Z Brassica rapa HOM05D005905 ORTHO05D005996 1.1e-24 118.2 433 27.3
Glyma.18G248600 Glycine max HOM05D005905 ORTHO05D005996 1.1e-24 118.2 434 27.2
A06p34480 Brassica napus HOM05D005905 ORTHO05D005996 1.4e-24 117.9 433 27.0
DCAR_019943 Daucus carota HOM05D005905 ORTHO05D005996 1.9e-24 117.5 426 26.8
Medtr7g081260 Medicago truncatula HOM05D005905 ORTHO05D005996 2.4e-24 117.1 442 28.3
Aa31LG11G2910 Aethionema arabicum HOM05D005905 ORTHO05D005996 4.1e-24 116.3 434 26.5
Carub.0006s2129 Capsella rubella HOM05D005905 ORTHO05D005996 4.1e-24 116.3 433 26.6
Solyc05g056320.3 Solanum lycopersicum HOM05D005905 ORTHO05D005996 5.4e-24 115.9 449 27.4
Sopen05g034710 Solanum pennellii HOM05D005905 ORTHO05D005996 5.4e-24 115.9 447 28.2
Hma1.2p1_0213F.1_g090480 Hydrangea macrophylla HOM05D005905 ORTHO05D005996 7.0e-24 115.5 247 37.7
Hma1.2p1_0213F.1_g090490 Hydrangea macrophylla HOM05D005905 ORTHO05D005996 7.0e-24 115.5 247 37.7
Lj4A826T50 Lonicera japonica HOM05D005905 ORTHO05D005996 7.0e-24 115.5 259 32.8
CsaV3_7G027220 Cucumis sativus L. HOM05D005905 ORTHO05D005996 9.2e-24 115.2 431 27.6
Phvul.008G048800 Phaseolus vulgaris HOM05D005905 ORTHO05D005996 9.2e-24 115.2 416 26.0
TWI75G0068 Tripterygium wilfordii HOM05D005905 ORTHO05D005996 9.2e-24 115.2 256 35.9
FAN23G0918 Fragaria x ananassa HOM05D000290 ORTHO05D002418 1.2e-23 114.8 365 32.1
Manes.17G045200 Manihot esculenta HOM05D005905 ORTHO05D005996 1.2e-23 114.8 420 28.6
Haze_19376 Corylus avellana HOM05D005905 ORTHO05D005996 2.0e-23 114.0 420 26.9
VMungo1383G1950 Vigna mungo HOM05D005905 ORTHO05D005996 2.0e-23 114.0 412 24.8
Lalb_Chr19g0126361 Lupinus albus HOM05D005905 ORTHO05D005996 4.6e-23 112.8 431 26.5
MBI03_g20878_MAGBIO Magnolia biondii HOM05D005905 ORTHO05D005996 4.6e-23 112.8 429 27.0
PGSC0003DMG400023332 Solanum tuberosum HOM05D005905 ORTHO05D005996 4.6e-23 112.8 456 27.9
Atru.chr3.1412 Acer truncatum HOM05D005905 ORTHO05D005996 6.0e-23 112.5 264 34.8
Ca_08049_v3 Cicer arietinum L. HOM05D005905 ORTHO05D005996 7.8e-23 112.1 442 27.1
Glyma.09G244700 Glycine max HOM05D005905 ORTHO05D005996 7.8e-23 112.1 254 33.1
TPR.G29110 Trifolium pratense HOM05D005905 ORTHO05D005996 7.8e-23 112.1 442 28.7
Eucgr.H05059 Eucalyptus grandis HOM05D005905 ORTHO05D005996 1.0e-22 111.7 451 26.8
Thhalv10004341m.g Eutrema salsugineum HOM05D005905 ORTHO05D005996 1.0e-22 111.7 276 32.2
BcaNung03738 Brassica carinata HOM05D005905 ORTHO05D005996 1.3e-22 111.3 439 27.6
BcaNung03739 Brassica carinata HOM05D005905 ORTHO05D005996 1.3e-22 111.3 439 27.6
CAN.G1921.10 Capsicum annuum HOM05D005905 ORTHO05D005996 2.3e-22 110.5 475 26.5
Ca_08055_v3 Cicer arietinum L. HOM05D005905 ORTHO05D005996 2.3e-22 110.5 427 26.5
Cc07_g19890 Coffea canephora HOM05D005905 ORTHO05D005996 6.6e-22 109.0 290 31.0
CiPaw.15G186200 Carya illinoinensis HOM05D005905 ORTHO05D005996 2.5e-21 107.1 253 34.4
Peaxi162Scf00353g00730 Petunia axillaris HOM05D005905 ORTHO05D005996 2.5e-21 107.1 468 26.1
Cfa020942 Carpinus fangiana HOM05D005905 ORTHO05D005996 4.3e-21 106.3 418 26.1
MELO3C015720.2 Cucumis melo HOM05D005905 ORTHO05D005996 1.2e-20 104.8 431 26.2
Lsat_1_v5_gn_2_40320 Lactuca sativa HOM05D005905 ORTHO05D005996 1.6e-20 104.4 243 32.9
CDE02G2172 Ceratophyllum demersum HOM05D005905 ORTHO05D005996 2.1e-20 104.0 433 25.2
Nitab4.5_0000496g0260 Nicotiana tabacum HOM05D005905 ORTHO05D005996 6.2e-20 102.4 472 26.3
ClCG09G007860 Citrullus lanatus HOM05D005905 ORTHO05D005996 8.0e-20 102.1 254 33.1
Nitab4.5_0010070g0020 Nicotiana tabacum HOM05D005905 ORTHO05D005996 1.1e-19 101.7 463 25.9
MSTRG.23227 Avicennia marina HOM05D005905 ORTHO05D005996 6.4e-17 92.4 435 25.1
Cc07_g19900 Coffea canephora HOM05D005905 ORTHO05D005996 5.4e-16 89.4 293 30.4
SGA_v2.0_scaffold12G06257 Striga asiatica HOM05D005905 ORTHO05D005996 5.4e-16 89.4 441 26.5
HanXRQChr04g0110551 Helianthus annuus HOM05D005905 ORTHO05D005996 9.2e-16 88.6 239 32.6
SalBow8G4641 Salvia bowleyana HOM05D005905 ORTHO05D005996 2.1e-15 87.4 399 24.6
Os04g0442100 Oryza sativa ssp. japonica HOM05D005905 ORTHO05D005996 4.6e-15 86.3 390 27.7
SEGI_40650 Sequoiadendron giganteum HOM05D005905 ORTHO05D005996 1.0e-14 85.1 403 25.1
Sed0023505 Sechium edule HOM05D005905 ORTHO05D005996 1.9e-13 80.9 259 31.7
Migut.H02558 Erythranthe guttata HOM05D005905 ORTHO05D005996 3.6e-12 76.6 412 24.8
HPP92_011435 Vanilla planifolia HOM05D005905 ORTHO05D005996 1.8e-11 74.3 253 30.4
Atru.chr3.1427 Acer truncatum HOM05D005905 ORTHO05D005996 5.2e-11 72.8 170 33.5
PGR102G2263 Punica granatum HOM05D005905 ORTHO05D005996 2.6e-10 70.5 41 73.2
unitig_899.g14973 Utricularia gibba HOM05D005905 ORTHO05D005996 3.4e-10 70.1 415 22.4
GSVIVG01000261001 Vitis vinifera HOM05D005905 ORTHO05D005996 3.4e-10 70.1 40 75.0
AagrBONN_evm.TU.Sc2ySwM_368.3232 Anthoceros agrestis HOM05D005905 ORTHO05D005996 1.3e-09 68.2 347 21.9
BcaNung03858 Brassica carinata HOM05D005905 ORTHO05D005996 1.7e-09 67.8 41 73.2
ATR1089G162 Amborella trichopoda HOM05D005905 ORTHO05D005996 3.7e-09 66.6 42 64.3
SHI08855 Sapria himalayana HOM05D005905 ORTHO05D005996 1.1e-08 65.1 146 32.9
HPP92_011427 Vanilla planifolia HOM05D005905 ORTHO05D005996 3.2e-08 63.5 41 65.9
Ah.06g188350 Amaranthus hybridus HOM05D005905 ORTHO05D005996 4.1e-08 63.2 335 26.0
Dinv17124 Davidia involucrata HOM05D010983 ORTHO05D005996 1.2e-07 61.6 40 65.0
CANSAT54G0939 Cannabis sativa HOM05D005905 ORTHO05D005996 2.1e-07 60.8 42 61.9
Ah.06g188380 Amaranthus hybridus HOM05D005905 ORTHO05D005996 3.5e-07 60.1 42 59.5
Pp3c18_21070 Physcomitrium patens HOM05D005905 ORTHO05D005996 1.0e-06 58.5 39 56.4


User provided reference genes

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