Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g188240 Amaranthus hybridus HOM05D004640 ORTHO05D005489 6.9e-235 817.0 436 100.0
EL10Ac4g09724 Beta vulgaris HOM05D004640 ORTHO05D005489 5.6e-168 594.7 506 68.2
AUR62006957 Chenopodium quinoa HOM05D004640 ORTHO05D005489 1.4e-163 580.1 502 67.1
Hund21765 Selenicereus undatus HOM05D004640 ORTHO05D005489 5.3e-158 561.6 500 65.6
AUR62000605 Chenopodium quinoa HOM05D004640 ORTHO05D005489 4.6e-154 548.5 495 65.5
Sc09g0001940 Simmondsia chinensis HOM05D004640 ORTHO05D005489 3.6e-151 538.9 500 62.6
Phvul.006G215300 Phaseolus vulgaris HOM05D004640 ORTHO05D005489 2.0e-133 479.9 507 58.0
Manes.10G125900 Manihot esculenta HOM05D004640 ORTHO05D005489 2.2e-132 476.5 503 58.3
TWI59G0201 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 2.9e-132 476.1 506 57.1
Dinv24776 Davidia involucrata HOM05D004640 ORTHO05D005489 3.8e-132 475.7 504 57.9
Actinidia19942 Actinidia chinensis HOM05D004640 ORTHO05D005489 8.4e-132 474.6 503 58.4
Hma1.2p1_0296F.1_g116830 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 8.4e-132 474.6 503 56.9
Glyma.15G045900 Glycine max HOM05D004640 ORTHO05D005489 1.4e-131 473.8 507 57.6
Lsat_1_v5_gn_5_71601 Lactuca sativa HOM05D004640 ORTHO05D005489 1.4e-131 473.8 500 55.8
TWI14G1252 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 2.5e-131 473.0 505 56.8
VMungo0540G1095 Vigna mungo HOM05D004640 ORTHO05D005489 3.5e-130 469.2 506 57.5
Rhsim05G0203300 Rhododendron simsii HOM05D004640 ORTHO05D005489 1.8e-129 466.8 502 57.4
CiPaw.05G048700 Carya illinoinensis HOM05D004640 ORTHO05D005489 2.3e-129 466.5 504 56.3
PGR142G2697 Punica granatum HOM05D004640 ORTHO05D005489 2.3e-129 466.5 511 57.1
Gohir.A04G121200 Gossypium hirsutum HOM05D004640 ORTHO05D005489 5.1e-129 465.3 505 56.0
Duzib132G0532 Durio zibethinus HOM05D004640 ORTHO05D005489 6.7e-129 464.9 505 55.0
Glyma.08G187100 Glycine max HOM05D004640 ORTHO05D005489 3.3e-128 462.6 507 56.4
CSS0031954 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 4.3e-128 462.2 502 58.0
Atru.chr6.619 Acer truncatum HOM05D004640 ORTHO05D005489 7.4e-128 461.5 505 56.0
Atru.chr6.621_Atru.chr6.622 Acer truncatum HOM05D004640 ORTHO05D005489 7.4e-128 461.5 505 56.0
arahy.Tifrunner.gnm1.ann1.Y1PSG0 Arachis hypogaea HOM05D004640 ORTHO05D005489 2.2e-127 459.9 506 57.1
CSS0010715 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 2.8e-127 459.5 502 57.6
Potri.001G211700 Populus trichocarpa HOM05D004640 ORTHO05D005489 1.8e-126 456.8 527 56.2
QL02p099200 Quercus lobata HOM05D004640 ORTHO05D005489 3.1e-126 456.1 505 55.6
Eucgr.I02737 Eucalyptus grandis HOM05D004640 ORTHO05D005489 9.0e-126 454.5 509 57.0
Lalb_Chr20g0123511 Lupinus albus HOM05D004640 ORTHO05D005489 2.0e-125 453.4 505 56.8
TPR.G2079 Trifolium pratense HOM05D004640 ORTHO05D005489 3.4e-125 452.6 506 55.9
Gorai.012G151900 Gossypium raimondii HOM05D004640 ORTHO05D005489 7.7e-125 451.4 532 50.0
Thecc.02G088200 Theobroma cacao HOM05D004640 ORTHO05D005489 1.0e-124 451.1 505 56.0
Cc09_g07620 Coffea canephora HOM05D004640 ORTHO05D005489 1.3e-124 450.7 504 56.3
Lj6g0021650 Lotus japonicus HOM05D004640 ORTHO05D005489 6.5e-124 448.4 544 53.3
CsaV3_3G019120 Cucumis sativus L. HOM05D004640 ORTHO05D005489 1.1e-123 447.6 505 55.6
Nn7g37934 Nelumbo nucifera HOM05D004640 ORTHO05D005489 1.9e-123 446.8 507 56.0
arahy.Tifrunner.gnm1.ann1.8G9BB5 Arachis hypogaea HOM05D004640 ORTHO05D005489 7.2e-123 444.9 469 54.2
Medtr2g006880 Medicago truncatula HOM05D004640 ORTHO05D005489 3.6e-122 442.6 505 55.2
DCAR_021303 Daucus carota HOM05D004640 ORTHO05D005489 3.0e-121 439.5 411 56.7
Sed0025782 Sechium edule HOM05D004640 ORTHO05D005489 3.0e-121 439.5 505 55.8
Lj4C822G11 Lonicera japonica HOM05D004640 ORTHO05D005489 5.1e-121 438.7 488 55.7
Ciclev10000505m.g Citrus clementina HOM05D004640 ORTHO05D005489 1.5e-120 437.2 508 54.5
Sabra01G0163500 Salix brachista HOM05D004640 ORTHO05D005489 3.3e-120 436.0 508 55.9
MSTRG.23232 Avicennia marina HOM05D004640 ORTHO05D005489 1.1e-118 431.0 501 55.3
Gorai.002G006000 Gossypium raimondii HOM05D004640 ORTHO05D005489 1.8e-118 430.3 512 53.1
Actinidia36578 Actinidia chinensis HOM05D004640 ORTHO05D005489 6.9e-118 428.3 463 59.4
CANSAT11G0894 Cannabis sativa HOM05D004640 ORTHO05D005489 9.1e-118 427.9 504 54.4
Solyc04g026280.2 Solanum lycopersicum HOM05D004640 ORTHO05D005489 9.1e-118 427.9 502 55.0
PSO541G2962 Papaver somniferum HOM05D004640 ORTHO05D005489 1.7e-116 423.7 508 53.7
Migut.H02548 Erythranthe guttata HOM05D004640 ORTHO05D005489 2.9e-116 422.9 500 55.0
Aqoxy1G01535 Aquilegia oxysepala HOM05D004640 ORTHO05D005489 5.0e-116 422.2 546 50.7
PSO675G0104 Papaver somniferum HOM05D004640 ORTHO05D005489 3.2e-115 419.5 506 53.8
Gohir.D01G005100 Gossypium hirsutum HOM05D004640 ORTHO05D005489 5.5e-115 418.7 503 52.9
FAN08G0534 Fragaria x ananassa HOM05D004640 ORTHO05D005489 7.2e-115 418.3 500 54.4
Gohir.A01G005001 Gossypium hirsutum HOM05D004640 ORTHO05D005489 7.2e-115 418.3 503 52.7
FvH4_5g29191 Fragaria vesca HOM05D004640 ORTHO05D005489 1.2e-114 417.5 500 54.0
vmacro12737 Vaccinium macrocarpon HOM05D004640 ORTHO05D005489 1.2e-114 417.5 623 46.7
HanXRQChr15g0469061 Helianthus annuus HOM05D004640 ORTHO05D005489 2.7e-114 416.4 507 53.5
FAN13G0955 Fragaria x ananassa HOM05D004640 ORTHO05D005489 3.6e-114 416.0 501 54.3
RcHm_v2.0_Chr1g0332251 Rosa chinensis HOM05D004640 ORTHO05D005489 6.1e-114 415.2 500 54.4
MELO3C019462.2 Cucumis melo HOM05D004640 ORTHO05D005489 1.4e-113 414.1 488 54.7
GSVIVG01022882001 Vitis vinifera HOM05D004640 ORTHO05D005489 1.4e-113 414.1 505 54.1
ECA233G0813 Erigeron canadensis HOM05D004640 ORTHO05D005489 4.8e-111 405.6 471 52.7
AT1G60995 Arabidopsis thaliana HOM05D004640 ORTHO05D005489 4.1e-110 402.5 503 53.9
Carub.0002s0421 Capsella rubella HOM05D004640 ORTHO05D005489 4.1e-110 402.5 503 53.5
Thhalv10023347m.g Eutrema salsugineum HOM05D004640 ORTHO05D005489 7.0e-110 401.7 503 53.3
Prupe.1G004500 Prunus persica HOM05D004640 ORTHO05D005489 9.1e-110 401.4 507 54.6
AL2G15460 Arabidopsis lyrata HOM05D004640 ORTHO05D005489 1.5e-109 400.6 503 53.3
Sopen04g014430 Solanum pennellii HOM05D004640 ORTHO05D005489 3.5e-109 399.4 486 53.9
THA.LOC104809619 Tarenaya hassleriana HOM05D004640 ORTHO05D005489 5.9e-109 398.7 500 53.2
Ca_00068_v3 Cicer arietinum L. HOM05D004640 ORTHO05D005489 7.7e-109 398.3 445 50.3
MD15G1426300 Malus domestica HOM05D004640 ORTHO05D005489 1.7e-108 397.1 506 54.0
Sp2g03520 Schrenkiella parvula HOM05D004640 ORTHO05D005489 3.8e-108 396.0 505 52.5
ClCG05G009610 Citrullus lanatus HOM05D004640 ORTHO05D005489 5.0e-108 395.6 446 51.3
MD08G1235100 Malus domestica HOM05D004640 ORTHO05D005489 1.1e-107 394.4 506 53.8
A01p29810 Brassica napus HOM05D004640 ORTHO05D005489 1.5e-107 394.0 507 51.9
BraA01t03109Z Brassica rapa HOM05D004640 ORTHO05D005489 1.5e-107 394.0 507 51.9
BcaB04g20302 Brassica carinata HOM05D004640 ORTHO05D005489 3.2e-107 392.9 503 51.7
BcaC02g10600 Brassica carinata HOM05D004640 ORTHO05D005489 5.5e-107 392.1 503 52.3
C04p25650 Brassica napus HOM05D004640 ORTHO05D005489 5.5e-107 392.1 503 52.3
C05p50900 Brassica napus HOM05D004640 ORTHO05D005489 5.5e-107 392.1 503 52.3
BcaC06g31828 Brassica carinata HOM05D004640 ORTHO05D005489 7.2e-107 391.7 503 52.3
COL.COLO4_11782 Corchorus olitorius HOM05D004640 ORTHO05D005489 2.1e-106 390.2 462 53.5
Os03g0659900 Oryza sativa ssp. japonica HOM05D004640 ORTHO05D005489 2.7e-106 389.8 510 49.6
C01p37670 Brassica napus HOM05D004640 ORTHO05D005489 3.6e-106 389.4 503 51.5
BolC1t03731H Brassica oleracea HOM05D004640 ORTHO05D005489 3.6e-106 389.4 503 51.5
Hund07189 Selenicereus undatus HOM05D004640 ORTHO05D005489 5.2e-105 385.6 368 57.9
TWI23G1121 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 8.2e-103 378.3 485 50.7
BolC4t24244H Brassica oleracea HOM05D004640 ORTHO05D005489 1.1e-102 377.9 466 49.4
Psat1g221200 Pisum sativum HOM05D004640 ORTHO05D005489 1.3e-100 370.9 455 52.1
MBI01_g44452_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 1.0e-97 361.3 510 46.3
SGA_v2.0_scaffold51G18853 Striga asiatica HOM05D004640 ORTHO05D005489 6.8e-97 358.6 503 48.5
Nitab4.5_0001785g0050 Nicotiana tabacum HOM05D004640 ORTHO05D005489 4.4e-96 355.9 566 42.0
Duzib052G0332 Durio zibethinus HOM05D004640 ORTHO05D005489 3.7e-95 352.8 478 49.2
HPP92_017742 Vanilla planifolia HOM05D004640 ORTHO05D005489 3.2e-91 339.7 509 47.5
unitig_0.g396 Utricularia gibba HOM05D004640 ORTHO05D005489 8.0e-90 335.1 502 47.8
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 9.8e-88 328.2 464 49.6
ATR0763G087 Amborella trichopoda HOM05D004640 ORTHO05D005489 6.3e-87 325.5 442 50.5
FAN04G1948 Fragaria x ananassa HOM05D004640 ORTHO05D005489 5.4e-86 322.4 503 41.7
Peaxi162Scf00577g00411 Petunia axillaris HOM05D004640 ORTHO05D005489 2.3e-84 317.0 415 46.0
FAN18G0226 Fragaria x ananassa HOM05D004640 ORTHO05D005489 5.0e-84 315.8 415 45.1
Mapoly0014s0041 Marchantia polymorpha HOM05D004640 ORTHO05D005489 9.8e-80 301.6 532 40.0
BcaC09g49343 Brassica carinata HOM05D004640 ORTHO05D005489 1.1e-78 298.1 339 56.9
Pp3c3_37820 Physcomitrium patens HOM05D004640 ORTHO05D005489 5.4e-78 295.8 489 42.7
Oeu032223.3 Olea europaea HOM05D000396 ORTHO05D000116 9.2e-78 295.0 239 73.2
Oeu046366.1 Olea europaea HOM05D004640 ORTHO05D005489 1.3e-76 291.2 452 46.9
AagrBONN_evm.TU.Sc2ySwM_344.1404 Anthoceros agrestis HOM05D004640 ORTHO05D005489 1.5e-72 277.7 539 36.7
Gohir.D04G163900 Gossypium hirsutum HOM05D004640 ORTHO05D005489 1.2e-69 268.1 202 71.3
Zm00001eb218090 Zea mays HOM05D004640 ORTHO05D005489 7.8e-69 265.4 239 69.5
CBR_g54224 Chara braunii HOM05D004640 ORTHO05D005489 1.7e-63 247.7 519 38.3
SMO116G0341 Selaginella moellendorffii HOM05D004640 ORTHO05D005489 8.3e-63 245.4 482 39.2
TAR381G0517 Trochodendron aralioides HOM05D004640 ORTHO05D005489 1.0e-60 238.4 551 33.9
CDE12G0675 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 1.4e-57 228.0 297 45.5
CDE12G0207 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 4.1e-54 216.5 284 41.5
Nitab4.5_0004809g0070 Nicotiana tabacum HOM05D004640 ORTHO05D005489 8.1e-50 202.2 344 37.2
Gohir.D04G163933 Gossypium hirsutum HOM05D004640 ORTHO05D005489 3.8e-47 193.4 200 50.0
TAR625G1136 Trochodendron aralioides HOM05D004640 ORTHO05D005489 3.8e-39 166.8 173 67.1
BNapus_Darmor_BZH_scaffold_271p00030 Brassica napus HOM05D004640 ORTHO05D005489 6.4e-39 166.0 257 43.2
CAN.G124.21 Capsicum annuum HOM05D004640 ORTHO05D005489 1.4e-38 164.9 124 89.5
BraSC39t46176Z Brassica rapa HOM05D004640 ORTHO05D005489 2.1e-37 161.0 124 73.4
Haze_01729 Corylus avellana HOM05D004640 ORTHO05D005489 1.7e-36 157.9 114 96.5
Manes.07G017650 Manihot esculenta HOM05D004640 ORTHO05D005489 4.8e-34 149.8 124 83.9
MBI01_g00654_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 1.4e-30 138.3 204 39.2
CDE12G0158 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 1.9e-30 137.9 108 90.7
CDE12G0153 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 2.3e-28 131.0 285 30.9
RcHm_v2.0_Chr7g0230911 Rosa chinensis HOM05D004640 ORTHO05D005489 5.3e-25 119.8 76 84.2
arahy.Tifrunner.gnm1.ann1.2GJ950 Arachis hypogaea HOM05D004640 ORTHO05D005489 6.9e-25 119.4 89 77.5
Haze_01724 Corylus avellana HOM05D004640 ORTHO05D005489 1.2e-24 118.6 164 36.6
Haze_01727 Corylus avellana HOM05D004640 ORTHO05D005489 6.5e-23 112.8 59 86.4
EL10Ac4g09779 Beta vulgaris HOM05D004640 ORTHO05D005489 7.1e-22 109.4 69 85.5
HPP92_017709 Vanilla planifolia HOM05D004640 ORTHO05D005489 7.9e-21 105.9 187 41.2
BNapus_Darmor_BZH_scaffold_271p00020 Brassica napus HOM05D004640 ORTHO05D005489 5.1e-20 103.2 84 70.2
Haze_01804 Corylus avellana HOM05D004640 ORTHO05D005489 8.2e-18 95.9 56 76.8
CDE12G0722 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 3.2e-14 84.0 124 49.2
SalBow8G0731 Salvia bowleyana HOM05D004640 ORTHO05D005489 3.2e-14 84.0 51 80.4
TAR625G0944 Trochodendron aralioides HOM05D004640 ORTHO05D005489 8.2e-10 69.3 119 30.3
Zm00001eb114350 Zea mays HOM05D004640 ORTHO05D005489 1.8e-09 68.2 52 59.6
RcHm_v2.0_Chr6g0266101 Rosa chinensis HOM05D004640 ORTHO05D005489 5.0e-07 60.1 32 90.6
RcHm_v2.0_Chr7g0219231 Rosa chinensis HOM05D003652 ORTHO05D005489 6.5e-07 59.7 36 86.1
SHI16685 Sapria himalayana HOM05D004640 ORTHO05D005489 6.5e-07 59.7 173 27.7
arahy.Tifrunner.gnm1.ann1.TB7XPK Arachis hypogaea HOM05D004640 ORTHO05D005489 1.4e-06 58.5 34 88.2
Lsat_1_v5_gn_5_81581 Lactuca sativa HOM05D004640 ORTHO05D005489 2.5e-06 57.8 107 29.0
PRCOL_00005332 Prasinoderma coloniale HOM05D004640 ORTHO05D005489 2.5e-06 57.8 78 47.4
SHI16673 Sapria himalayana HOM05D004640 ORTHO05D005489 9.4e-06 55.8 34 76.5


User provided reference genes

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